Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:46839040-47299049

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cgrrf1 14 46832125 to 46854193 22068 + protein coding gene cell growth regulator with ring finger domain 1
Gm48949 14 46844813 to 46845480 667 + sense intronic lncRNA gene predicted gene, 48949
Gm34934 14 46878960 to 46882767 3807 - lincRNA gene predicted gene, 34934
Cpgi6376 14 46881990 to 46885151 3161 CpG island CpG island 6376
Tssr125240 14 46882931 to 46882936 5 + TSS region transcription start site region 125240
Tssr125241 14 46882958 to 46882973 15 + TSS region transcription start site region 125241
Samd4 14 46882965 to 47105817 222852 + protein coding gene sterile alpha motif domain containing 4
Tssr125242 14 46882994 to 46882999 5 + TSS region transcription start site region 125242
2810457G06Rik 14 46883698 to 46885064 1366 - antisense lncRNA gene RIKEN cDNA 2810457G06 gene
Tssr4382 14 46884030 to 46884050 20 + TSS region transcription start site region 4382
Tssr125243 14 46884576 to 46884585 9 + TSS region transcription start site region 125243
Tssr128301 14 46884987 to 46885029 42 - TSS region transcription start site region 128301
Tssr125244 14 46889330 to 46889335 5 + TSS region transcription start site region 125244
Tssr125245 14 46889361 to 46889378 17 + TSS region transcription start site region 125245
Gm48958 14 46893520 to 46896483 2963 + unclassified gene predicted gene, 48958
Tssr125246 14 46899426 to 46899445 19 + TSS region transcription start site region 125246
Tssr128302 14 46901608 to 46901609 1 - TSS region transcription start site region 128302
D14Mit59 14 46912408 to 46912610 202 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 59
Cpgi6377 14 46932200 to 46932424 224 CpG island CpG island 6377
Mir378c 14 46954830 to 46954928 98 - miRNA gene microRNA 378c
Gm15562 14 46961440 to 46965684 4244 + sense intronic lncRNA gene predicted gene 15562
Tssr125247 14 47001336 to 47001343 7 + TSS region transcription start site region 125247
Tssr125248 14 47001354 to 47001377 23 + TSS region transcription start site region 125248
Tssr125249 14 47001379 to 47001393 14 + TSS region transcription start site region 125249
Tssr125250 14 47062870 to 47062874 4 + TSS region transcription start site region 125250
Tssr4383 14 47064996 to 47065003 7 + TSS region transcription start site region 4383
Tssr125251 14 47066417 to 47066439 22 + TSS region transcription start site region 125251
Tssr125252 14 47068938 to 47068948 10 + TSS region transcription start site region 125252
Tssr125253 14 47068962 to 47068983 21 + TSS region transcription start site region 125253
Tssr125254 14 47068993 to 47069032 39 + TSS region transcription start site region 125254
Tssr125255 14 47069040 to 47069049 9 + TSS region transcription start site region 125255
Cpgi6378 14 47073929 to 47074242 313 CpG island CpG island 6378
Cpgi6379 14 47086753 to 47087037 284 CpG island CpG island 6379
Tssr125256 14 47087525 to 47087530 5 + TSS region transcription start site region 125256
Gm10371 14 47097679 to 47116161 18482 - antisense lncRNA gene predicted gene 10371
Tssr4384 14 47097748 to 47097752 4 + TSS region transcription start site region 4384
Ath13 14 47097793 to 47097924 131 QTL atherosclerosis 13
Hcbip1 14 47097793 to 59725144 12627351 QTL hexachlorobenzene induced porphyria 1
Cia17 14 47097793 to 47097924 131 QTL collagen induced arthritis QTL 17
D14Mit60 14 47097793 to 47097924 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 60
Gm49132 14 47116296 to 47120439 4143 + unclassified gene predicted gene, 49132
Gch1 14 47153895 to 47189402 35507 - protein coding gene GTP cyclohydrolase 1
Gm49134 14 47162377 to 47162634 257 + pseudogene predicted gene, 49134
Tssr128303 14 47167747 to 47167766 19 - TSS region transcription start site region 128303
Tssr128304 14 47167793 to 47167811 18 - TSS region transcription start site region 128304
Tssr128305 14 47167822 to 47167835 13 - TSS region transcription start site region 128305
Tssr128306 14 47167890 to 47167909 19 - TSS region transcription start site region 128306
Tssr128307 14 47175648 to 47175664 16 - TSS region transcription start site region 128307
Tssr128308 14 47177304 to 47177337 33 - TSS region transcription start site region 128308
Tssr128309 14 47177838 to 47177861 23 - TSS region transcription start site region 128309
Tssr128310 14 47177875 to 47177886 11 - TSS region transcription start site region 128310
Gm18811 14 47177883 to 47178546 663 - pseudogene predicted gene, 18811
Tssr128311 14 47186953 to 47186957 4 - TSS region transcription start site region 128311
Cpgi6380 14 47188521 to 47189730 1209 CpG island CpG island 6380
Tssr128312 14 47189406 to 47189419 13 - TSS region transcription start site region 128312
Tssr125257 14 47189626 to 47189646 20 + TSS region transcription start site region 125257
Gm49136 14 47199870 to 47200120 250 + pseudogene predicted gene, 49136
Tssr4385 14 47200245 to 47200252 7 + TSS region transcription start site region 4385
Gm49137 14 47214135 to 47214738 603 - pseudogene predicted gene, 49137
Wdhd1 14 47240944 to 47276857 35913 - protein coding gene WD repeat and HMG-box DNA binding protein 1
Gm49149 14 47261832 to 47262186 354 - unclassified gene predicted gene, 49149
Gm24378 14 47270859 to 47270964 105 - snRNA gene predicted gene, 24378
Tssr128313 14 47275349 to 47275354 5 - TSS region transcription start site region 128313
Cpgi6381 14 47276277 to 47277413 1136 CpG island CpG island 6381
Gm49150 14 47276370 to 47276796 426 + antisense lncRNA gene predicted gene, 49150
Tssr128314 14 47276792 to 47276848 56 - TSS region transcription start site region 128314
Tssr128315 14 47276851 to 47276864 13 - TSS region transcription start site region 128315
Tssr125258 14 47276910 to 47276936 26 + TSS region transcription start site region 125258
Tssr125259 14 47276990 to 47277009 19 + TSS region transcription start site region 125259
Tssr125260 14 47277040 to 47277045 5 + TSS region transcription start site region 125260
Tssr4386 14 47277134 to 47277143 9 + TSS region transcription start site region 4386
Socs4 14 47277143 to 47291591 14448 + protein coding gene suppressor of cytokine signaling 4
Tssr128316 14 47277188 to 47277211 23 - TSS region transcription start site region 128316
Tssr125261 14 47287158 to 47287160 2 + TSS region transcription start site region 125261
Tssr125262 14 47291953 to 47291966 13 + TSS region transcription start site region 125262
Tssr125263 14 47292306 to 47292310 4 + TSS region transcription start site region 125263
Gm35078 14 47296399 to 47298405 2006 + protein coding gene predicted gene, 35078
Tssr125264 14 47296509 to 47296545 36 + TSS region transcription start site region 125264
Gm9502 14 47297508 to 47298542 1034 - unclassified gene predicted gene 9502
Cpgi6382 14 47298014 to 47298686 672 CpG island CpG island 6382
Tssr125265 14 47298260 to 47298342 82 + TSS region transcription start site region 125265
Mapk1ip1l 14 47298266 to 47323204 24938 + protein coding gene mitogen-activated protein kinase 1 interacting protein 1-like
Tssr125266 14 47298618 to 47298647 29 + TSS region transcription start site region 125266