Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:46497408-47327610

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48912 14 46482225 to 46516442 34217 - lincRNA gene predicted gene, 48912
Tssr128284 14 46516435 to 46516470 35 - TSS region transcription start site region 128284
Gm49319 14 46528176 to 46637408 109232 - unclassified non-coding RNA gene predicted gene, 49319
E130120K24Rik 14 46546345 to 46557076 10731 + lincRNA gene RIKEN cDNA E130120K24 gene
Rubie 14 46568331 to 46575851 7520 - lincRNA gene RNA upstream of Bmp4 expressed in inner ear
Tssr128285 14 46575849 to 46575855 6 - TSS region transcription start site region 128285
Tssr128286 14 46597157 to 46597166 9 - TSS region transcription start site region 128286
4933425B07Rik 14 46602806 to 46637423 34617 - lincRNA gene RIKEN cDNA 4933425B07 gene
Gm18761 14 46607764 to 46608464 700 + pseudogene predicted gene, 18761
D14Mit152 14 46623176 to 46623296 120 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 152
Gm41146 14 46626311 to 46630097 3786 + lncRNA gene predicted gene, 41146
Tssr128287 14 46634427 to 46634432 5 - TSS region transcription start site region 128287
Tssr128288 14 46634458 to 46634469 11 - TSS region transcription start site region 128288
Tssr128289 14 46634489 to 46634494 5 - TSS region transcription start site region 128289
D330046F09Rik 14 46645817 to 46673775 27958 - lincRNA gene RIKEN cDNA D330046F09 gene
Gm48917 14 46671702 to 46681301 9599 + unclassified non-coding RNA gene predicted gene, 48917
Tssr128290 14 46673812 to 46673818 6 - TSS region transcription start site region 128290
Tssr128291 14 46673821 to 46673835 14 - TSS region transcription start site region 128291
Gm48924 14 46743215 to 46746399 3184 - lincRNA gene predicted gene, 48924
Cia49 14 46759537 to 46759676 139 QTL collagen induced arthritis QTL 49
D14Mit141 14 46759537 to 46759676 139 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 141
Cpgi6372 14 46760196 to 46761073 877 CpG island CpG island 6372
Cdkn3 14 46760465 to 46771530 11065 + protein coding gene cyclin-dependent kinase inhibitor 3
Tssr125234 14 46760526 to 46760557 31 + TSS region transcription start site region 125234
Tssr125235 14 46760567 to 46760626 59 + TSS region transcription start site region 125235
Cnih1 14 46775567 to 46788411 12844 - protein coding gene cornichon family AMPA receptor auxiliary protein 1
Cpgi6373 14 46787564 to 46788528 964 CpG island CpG island 6373
Gm48933 14 46787633 to 46788530 897 + antisense lncRNA gene predicted gene, 48933
Tssr128292 14 46788267 to 46788329 62 - TSS region transcription start site region 128292
Gm48939 14 46804135 to 46806151 2016 - unclassified gene predicted gene, 48939
Gmfb 14 46808149 to 46822242 14093 - protein coding gene glia maturation factor, beta
Tssr128293 14 46809273 to 46809285 12 - TSS region transcription start site region 128293
Cpgi6374 14 46821792 to 46822544 752 CpG island CpG island 6374
Tssr128294 14 46821932 to 46821975 43 - TSS region transcription start site region 128294
Tssr128295 14 46822030 to 46822061 31 - TSS region transcription start site region 128295
Tssr128296 14 46822122 to 46822135 13 - TSS region transcription start site region 128296
Tssr128297 14 46822136 to 46822167 31 - TSS region transcription start site region 128297
Tssr128298 14 46822171 to 46822222 51 - TSS region transcription start site region 128298
Tssr128299 14 46822232 to 46822266 34 - TSS region transcription start site region 128299
Gm10101 14 46829109 to 46832027 2918 - bidirectional promoter lncRNA gene predicted gene 10101
Cpgi6375 14 46831716 to 46832721 1005 CpG island CpG island 6375
Tssr128300 14 46831984 to 46832057 73 - TSS region transcription start site region 128300
Tssr125236 14 46832099 to 46832112 13 + TSS region transcription start site region 125236
Cgrrf1 14 46832125 to 46854193 22068 + protein coding gene cell growth regulator with ring finger domain 1
Tssr125237 14 46832127 to 46832151 24 + TSS region transcription start site region 125237
Tssr125238 14 46832152 to 46832166 14 + TSS region transcription start site region 125238
Tssr125239 14 46832210 to 46832274 64 + TSS region transcription start site region 125239
Gm48949 14 46844813 to 46845480 667 + sense intronic lncRNA gene predicted gene, 48949
Gm34934 14 46878960 to 46882767 3807 - lincRNA gene predicted gene, 34934
Cpgi6376 14 46881990 to 46885151 3161 CpG island CpG island 6376
Tssr125240 14 46882931 to 46882936 5 + TSS region transcription start site region 125240
Tssr125241 14 46882958 to 46882973 15 + TSS region transcription start site region 125241
Samd4 14 46882965 to 47105817 222852 + protein coding gene sterile alpha motif domain containing 4
Tssr125242 14 46882994 to 46882999 5 + TSS region transcription start site region 125242
2810457G06Rik 14 46883698 to 46885064 1366 - antisense lncRNA gene RIKEN cDNA 2810457G06 gene
Tssr4382 14 46884030 to 46884050 20 + TSS region transcription start site region 4382
Tssr125243 14 46884576 to 46884585 9 + TSS region transcription start site region 125243
Tssr128301 14 46884987 to 46885029 42 - TSS region transcription start site region 128301
Tssr125244 14 46889330 to 46889335 5 + TSS region transcription start site region 125244
Tssr125245 14 46889361 to 46889378 17 + TSS region transcription start site region 125245
Gm48958 14 46893520 to 46896483 2963 + unclassified gene predicted gene, 48958
Tssr125246 14 46899426 to 46899445 19 + TSS region transcription start site region 125246
Tssr128302 14 46901608 to 46901609 1 - TSS region transcription start site region 128302
D14Mit59 14 46912408 to 46912610 202 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 59
Cpgi6377 14 46932200 to 46932424 224 CpG island CpG island 6377
Mir378c 14 46954830 to 46954928 98 - miRNA gene microRNA 378c
Gm15562 14 46961440 to 46965684 4244 + sense intronic lncRNA gene predicted gene 15562
Tssr125247 14 47001336 to 47001343 7 + TSS region transcription start site region 125247
Tssr125248 14 47001354 to 47001377 23 + TSS region transcription start site region 125248
Tssr125249 14 47001379 to 47001393 14 + TSS region transcription start site region 125249
Tssr125250 14 47062870 to 47062874 4 + TSS region transcription start site region 125250
Tssr4383 14 47064996 to 47065003 7 + TSS region transcription start site region 4383
Tssr125251 14 47066417 to 47066439 22 + TSS region transcription start site region 125251
Tssr125252 14 47068938 to 47068948 10 + TSS region transcription start site region 125252
Tssr125253 14 47068962 to 47068983 21 + TSS region transcription start site region 125253
Tssr125254 14 47068993 to 47069032 39 + TSS region transcription start site region 125254
Tssr125255 14 47069040 to 47069049 9 + TSS region transcription start site region 125255
Cpgi6378 14 47073929 to 47074242 313 CpG island CpG island 6378
Cpgi6379 14 47086753 to 47087037 284 CpG island CpG island 6379
Tssr125256 14 47087525 to 47087530 5 + TSS region transcription start site region 125256
Gm10371 14 47097679 to 47116161 18482 - antisense lncRNA gene predicted gene 10371
Tssr4384 14 47097748 to 47097752 4 + TSS region transcription start site region 4384
Hcbip1 14 47097793 to 59725144 12627351 QTL hexachlorobenzene induced porphyria 1
D14Mit60 14 47097793 to 47097924 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 60
Cia17 14 47097793 to 47097924 131 QTL collagen induced arthritis QTL 17
Ath13 14 47097793 to 47097924 131 QTL atherosclerosis 13
Gm49132 14 47116296 to 47120439 4143 + unclassified gene predicted gene, 49132
Gch1 14 47153895 to 47189402 35507 - protein coding gene GTP cyclohydrolase 1
Gm49134 14 47162377 to 47162634 257 + pseudogene predicted gene, 49134
Tssr128303 14 47167747 to 47167766 19 - TSS region transcription start site region 128303
Tssr128304 14 47167793 to 47167811 18 - TSS region transcription start site region 128304
Tssr128305 14 47167822 to 47167835 13 - TSS region transcription start site region 128305
Tssr128306 14 47167890 to 47167909 19 - TSS region transcription start site region 128306
Tssr128307 14 47175648 to 47175664 16 - TSS region transcription start site region 128307
Tssr128308 14 47177304 to 47177337 33 - TSS region transcription start site region 128308
Tssr128309 14 47177838 to 47177861 23 - TSS region transcription start site region 128309
Tssr128310 14 47177875 to 47177886 11 - TSS region transcription start site region 128310
Gm18811 14 47177883 to 47178546 663 - pseudogene predicted gene, 18811
Tssr128311 14 47186953 to 47186957 4 - TSS region transcription start site region 128311
Cpgi6380 14 47188521 to 47189730 1209 CpG island CpG island 6380
Tssr128312 14 47189406 to 47189419 13 - TSS region transcription start site region 128312
Tssr125257 14 47189626 to 47189646 20 + TSS region transcription start site region 125257
Gm49136 14 47199870 to 47200120 250 + pseudogene predicted gene, 49136
Tssr4385 14 47200245 to 47200252 7 + TSS region transcription start site region 4385
Gm49137 14 47214135 to 47214738 603 - pseudogene predicted gene, 49137
Wdhd1 14 47240944 to 47276857 35913 - protein coding gene WD repeat and HMG-box DNA binding protein 1
Gm49149 14 47261832 to 47262186 354 - unclassified gene predicted gene, 49149
Gm24378 14 47270859 to 47270964 105 - snRNA gene predicted gene, 24378
Tssr128313 14 47275349 to 47275354 5 - TSS region transcription start site region 128313
Cpgi6381 14 47276277 to 47277413 1136 CpG island CpG island 6381
Gm49150 14 47276370 to 47276796 426 + antisense lncRNA gene predicted gene, 49150
Tssr128314 14 47276792 to 47276848 56 - TSS region transcription start site region 128314
Tssr128315 14 47276851 to 47276864 13 - TSS region transcription start site region 128315
Tssr125258 14 47276910 to 47276936 26 + TSS region transcription start site region 125258
Tssr125259 14 47276990 to 47277009 19 + TSS region transcription start site region 125259
Tssr125260 14 47277040 to 47277045 5 + TSS region transcription start site region 125260
Tssr4386 14 47277134 to 47277143 9 + TSS region transcription start site region 4386
Socs4 14 47277143 to 47291591 14448 + protein coding gene suppressor of cytokine signaling 4
Tssr128316 14 47277188 to 47277211 23 - TSS region transcription start site region 128316
Tssr125261 14 47287158 to 47287160 2 + TSS region transcription start site region 125261
Tssr125262 14 47291953 to 47291966 13 + TSS region transcription start site region 125262
Tssr125263 14 47292306 to 47292310 4 + TSS region transcription start site region 125263
Gm35078 14 47296399 to 47298405 2006 + protein coding gene predicted gene, 35078
Tssr125264 14 47296509 to 47296545 36 + TSS region transcription start site region 125264
Gm9502 14 47297508 to 47298542 1034 - unclassified gene predicted gene 9502
Cpgi6382 14 47298014 to 47298686 672 CpG island CpG island 6382
Tssr125265 14 47298260 to 47298342 82 + TSS region transcription start site region 125265
Mapk1ip1l 14 47298266 to 47323204 24938 + protein coding gene mitogen-activated protein kinase 1 interacting protein 1-like
Tssr125266 14 47298618 to 47298647 29 + TSS region transcription start site region 125266
Gm49189 14 47301982 to 47305485 3503 - antisense lncRNA gene predicted gene, 49189
Tssr4387 14 47307917 to 47307929 12 + TSS region transcription start site region 4387
Tssr125267 14 47310539 to 47310564 25 + TSS region transcription start site region 125267
Tssr125268 14 47310670 to 47310704 34 + TSS region transcription start site region 125268
5830458C19Rik 14 47316473 to 47317489 1016 unclassified gene RIKEN cDNA 5830458C19 gene
Tssr125269 14 47319399 to 47319412 13 + TSS region transcription start site region 125269
Tssr125270 14 47319441 to 47319454 13 + TSS region transcription start site region 125270
Tssr125271 14 47319457 to 47319490 33 + TSS region transcription start site region 125271
Tssr125272 14 47319495 to 47319539 44 + TSS region transcription start site region 125272
Tssr125273 14 47319580 to 47319595 15 + TSS region transcription start site region 125273
Tssr125274 14 47319669 to 47319730 61 + TSS region transcription start site region 125274
Gm49190 14 47320410 to 47321056 646 - pseudogene predicted gene, 49190