Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:46187157-47007166

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D14Mit134 14 46196535 to 46196653 118 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 134
Tssr125226 14 46221105 to 46221124 19 + TSS region transcription start site region 125226
Gm34499 14 46221115 to 46227688 6573 + lncRNA gene predicted gene, 34499
Tssr125227 14 46221139 to 46221152 13 + TSS region transcription start site region 125227
Tssr125228 14 46379433 to 46379436 3 + TSS region transcription start site region 125228
Tssr125229 14 46379447 to 46379466 19 + TSS region transcription start site region 125229
Gm15217 14 46379524 to 46383608 4084 + protein coding gene predicted gene 15217
Cpgi6367 14 46380279 to 46380773 494 CpG island CpG island 6367
Bmp4 14 46383525 to 46390669 7144 - protein coding gene bone morphogenetic protein 4
D14Mit129 14 46383749 to 46383892 143 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 129
Cpgi6368 14 46385695 to 46386148 453 CpG island CpG island 6368
Tssr128277 14 46386426 to 46386436 10 - TSS region transcription start site region 128277
Cpgi6369 14 46387018 to 46389226 2208 CpG island CpG island 6369
Tssr128278 14 46387262 to 46387283 21 - TSS region transcription start site region 128278
Tssr128279 14 46387298 to 46387312 14 - TSS region transcription start site region 128279
Tssr125230 14 46387470 to 46387484 14 + TSS region transcription start site region 125230
Tssr125231 14 46387487 to 46387525 38 + TSS region transcription start site region 125231
Tssr125232 14 46387528 to 46387559 31 + TSS region transcription start site region 125232
Gm15222 14 46387954 to 46389450 1496 + antisense lncRNA gene predicted gene 15222
Tssr128280 14 46388362 to 46388396 34 - TSS region transcription start site region 128280
Cpgi6370 14 46390330 to 46390753 423 CpG island CpG island 6370
Tssr128281 14 46390476 to 46390491 15 - TSS region transcription start site region 128281
Tssr128282 14 46390501 to 46390529 28 - TSS region transcription start site region 128282
Tssr128283 14 46390576 to 46390606 30 - TSS region transcription start site region 128283
Tssr125233 14 46390782 to 46390793 11 + TSS region transcription start site region 125233
Cpgi6371 14 46398293 to 46398688 395 CpG island CpG island 6371
Gm15221 14 46436855 to 46454535 17680 + lincRNA gene predicted gene 15221
Gm48910 14 46454342 to 46456456 2114 - lincRNA gene predicted gene, 48910
Gm48911 14 46461162 to 46463520 2358 - lincRNA gene predicted gene, 48911
Gm34756 14 46481257 to 46493619 12362 + lincRNA gene predicted gene, 34756
Gm48912 14 46482225 to 46516442 34217 - lincRNA gene predicted gene, 48912
Tssr128284 14 46516435 to 46516470 35 - TSS region transcription start site region 128284
Gm49319 14 46528176 to 46637408 109232 - unclassified non-coding RNA gene predicted gene, 49319
E130120K24Rik 14 46546345 to 46557076 10731 + lincRNA gene RIKEN cDNA E130120K24 gene
Rubie 14 46568331 to 46575851 7520 - lincRNA gene RNA upstream of Bmp4 expressed in inner ear
Tssr128285 14 46575849 to 46575855 6 - TSS region transcription start site region 128285
Tssr128286 14 46597157 to 46597166 9 - TSS region transcription start site region 128286
4933425B07Rik 14 46602806 to 46637423 34617 - lincRNA gene RIKEN cDNA 4933425B07 gene
Gm18761 14 46607764 to 46608464 700 + pseudogene predicted gene, 18761
D14Mit152 14 46623176 to 46623296 120 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 152
Gm41146 14 46626311 to 46630097 3786 + lncRNA gene predicted gene, 41146
Tssr128287 14 46634427 to 46634432 5 - TSS region transcription start site region 128287
Tssr128288 14 46634458 to 46634469 11 - TSS region transcription start site region 128288
Tssr128289 14 46634489 to 46634494 5 - TSS region transcription start site region 128289
D330046F09Rik 14 46645817 to 46673775 27958 - lincRNA gene RIKEN cDNA D330046F09 gene
Gm48917 14 46671702 to 46681301 9599 + unclassified non-coding RNA gene predicted gene, 48917
Tssr128290 14 46673812 to 46673818 6 - TSS region transcription start site region 128290
Tssr128291 14 46673821 to 46673835 14 - TSS region transcription start site region 128291
Gm48924 14 46743215 to 46746399 3184 - lincRNA gene predicted gene, 48924
D14Mit141 14 46759537 to 46759676 139 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 141
Cia49 14 46759537 to 46759676 139 QTL collagen induced arthritis QTL 49
Cpgi6372 14 46760196 to 46761073 877 CpG island CpG island 6372
Cdkn3 14 46760465 to 46771530 11065 + protein coding gene cyclin-dependent kinase inhibitor 3
Tssr125234 14 46760526 to 46760557 31 + TSS region transcription start site region 125234
Tssr125235 14 46760567 to 46760626 59 + TSS region transcription start site region 125235
Cnih1 14 46775567 to 46788411 12844 - protein coding gene cornichon family AMPA receptor auxiliary protein 1
Cpgi6373 14 46787564 to 46788528 964 CpG island CpG island 6373
Gm48933 14 46787633 to 46788530 897 + antisense lncRNA gene predicted gene, 48933
Tssr128292 14 46788267 to 46788329 62 - TSS region transcription start site region 128292
Gm48939 14 46804135 to 46806151 2016 - unclassified gene predicted gene, 48939
Gmfb 14 46808149 to 46822242 14093 - protein coding gene glia maturation factor, beta
Tssr128293 14 46809273 to 46809285 12 - TSS region transcription start site region 128293
Cpgi6374 14 46821792 to 46822544 752 CpG island CpG island 6374
Tssr128294 14 46821932 to 46821975 43 - TSS region transcription start site region 128294
Tssr128295 14 46822030 to 46822061 31 - TSS region transcription start site region 128295
Tssr128296 14 46822122 to 46822135 13 - TSS region transcription start site region 128296
Tssr128297 14 46822136 to 46822167 31 - TSS region transcription start site region 128297
Tssr128298 14 46822171 to 46822222 51 - TSS region transcription start site region 128298
Tssr128299 14 46822232 to 46822266 34 - TSS region transcription start site region 128299
Gm10101 14 46829109 to 46832027 2918 - bidirectional promoter lncRNA gene predicted gene 10101
Cpgi6375 14 46831716 to 46832721 1005 CpG island CpG island 6375
Tssr128300 14 46831984 to 46832057 73 - TSS region transcription start site region 128300
Tssr125236 14 46832099 to 46832112 13 + TSS region transcription start site region 125236
Cgrrf1 14 46832125 to 46854193 22068 + protein coding gene cell growth regulator with ring finger domain 1
Tssr125237 14 46832127 to 46832151 24 + TSS region transcription start site region 125237
Tssr125238 14 46832152 to 46832166 14 + TSS region transcription start site region 125238
Tssr125239 14 46832210 to 46832274 64 + TSS region transcription start site region 125239
Gm48949 14 46844813 to 46845480 667 + sense intronic lncRNA gene predicted gene, 48949
Gm34934 14 46878960 to 46882767 3807 - lincRNA gene predicted gene, 34934
Cpgi6376 14 46881990 to 46885151 3161 CpG island CpG island 6376
Tssr125240 14 46882931 to 46882936 5 + TSS region transcription start site region 125240
Tssr125241 14 46882958 to 46882973 15 + TSS region transcription start site region 125241
Samd4 14 46882965 to 47105817 222852 + protein coding gene sterile alpha motif domain containing 4
Tssr125242 14 46882994 to 46882999 5 + TSS region transcription start site region 125242
2810457G06Rik 14 46883698 to 46885064 1366 - antisense lncRNA gene RIKEN cDNA 2810457G06 gene
Tssr4382 14 46884030 to 46884050 20 + TSS region transcription start site region 4382
Tssr125243 14 46884576 to 46884585 9 + TSS region transcription start site region 125243
Tssr128301 14 46884987 to 46885029 42 - TSS region transcription start site region 128301
Tssr125244 14 46889330 to 46889335 5 + TSS region transcription start site region 125244
Tssr125245 14 46889361 to 46889378 17 + TSS region transcription start site region 125245
Gm48958 14 46893520 to 46896483 2963 + unclassified gene predicted gene, 48958
Tssr125246 14 46899426 to 46899445 19 + TSS region transcription start site region 125246
Tssr128302 14 46901608 to 46901609 1 - TSS region transcription start site region 128302
D14Mit59 14 46912408 to 46912610 202 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 59
Cpgi6377 14 46932200 to 46932424 224 CpG island CpG island 6377
Mir378c 14 46954830 to 46954928 98 - miRNA gene microRNA 378c
Gm15562 14 46961440 to 46965684 4244 + sense intronic lncRNA gene predicted gene 15562
Tssr125247 14 47001336 to 47001343 7 + TSS region transcription start site region 125247
Tssr125248 14 47001354 to 47001377 23 + TSS region transcription start site region 125248
Tssr125249 14 47001379 to 47001393 14 + TSS region transcription start site region 125249