Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:45365279-47395773

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293 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Styx 14 45351186 to 45376884 25698 + protein coding gene serine/threonine/tyrosine interaction protein
Gnpnat1 14 45376421 to 45388956 12535 - protein coding gene glucosamine-phosphate N-acetyltransferase 1
Cpgi6362 14 45388449 to 45389374 925 CpG island CpG island 6362
Tssr128251 14 45388747 to 45388758 11 - TSS region transcription start site region 128251
Tssr128252 14 45388772 to 45388836 64 - TSS region transcription start site region 128252
Tssr125220 14 45389028 to 45389076 48 + TSS region transcription start site region 125220
Tssr125221 14 45391679 to 45391687 8 + TSS region transcription start site region 125221
Gm41143 14 45391733 to 45422370 30637 + lncRNA gene predicted gene, 41143
Gm25353 14 45404840 to 45404960 120 - miRNA gene predicted gene, 25353
Tssr128253 14 45442476 to 45442496 20 - TSS region transcription start site region 128253
Gm34250 14 45442754 to 45447073 4319 - lincRNA gene predicted gene, 34250
Tssr128254 14 45444966 to 45444968 2 - TSS region transcription start site region 128254
Fermt2 14 45458792 to 45530113 71321 - protein coding gene fermitin family member 2
Gm22637 14 45461363 to 45461645 282 - unclassified non-coding RNA gene predicted gene, 22637
Tssr128255 14 45477852 to 45477855 3 - TSS region transcription start site region 128255
Tssr128256 14 45477856 to 45477870 14 - TSS region transcription start site region 128256
Tssr128257 14 45477872 to 45477883 11 - TSS region transcription start site region 128257
9630050E16Rik 14 45484645 to 45492085 7440 - unclassified gene RIKEN cDNA 9630050E16 gene
Cpgi6363 14 45529184 to 45530804 1620 CpG island CpG island 6363
Tssr128258 14 45529550 to 45529621 71 - TSS region transcription start site region 128258
Tssr128259 14 45529775 to 45529841 66 - TSS region transcription start site region 128259
Tssr128260 14 45529990 to 45530019 29 - TSS region transcription start site region 128260
Tssr128261 14 45530020 to 45530056 36 - TSS region transcription start site region 128261
Tssr128262 14 45530130 to 45530182 52 - TSS region transcription start site region 128262
Tssr128263 14 45530188 to 45530219 31 - TSS region transcription start site region 128263
Tssr128264 14 45530251 to 45530282 31 - TSS region transcription start site region 128264
Gm46452 14 45530470 to 45538946 8476 + lncRNA gene predicted gene, 46452
Gm41144 14 45541173 to 45543567 2394 - lincRNA gene predicted gene, 41144
Tssr125222 14 45543675 to 45543692 17 + TSS region transcription start site region 125222
4930527F14Rik 14 45543710 to 45562877 19167 + bidirectional promoter lncRNA gene RIKEN cDNA 4930527F14 gene
Gm49123 14 45551838 to 45554402 2564 - lincRNA gene predicted gene, 49123
Gm5206 14 45557443 to 45558271 828 - pseudogene predicted pseudogene 5206
Gm15601 14 45563834 to 45598512 34678 + antisense lncRNA gene predicted gene 15601
Gm49124 14 45565531 to 45586120 20589 + lincRNA gene predicted gene, 49124
Cpgi6364 14 45566334 to 45566733 399 CpG island CpG island 6364
Tssr125223 14 45573536 to 45573538 2 + TSS region transcription start site region 125223
Gm41145 14 45573816 to 45582167 8351 - lncRNA gene predicted gene, 41145
Tssr128265 14 45582032 to 45582040 8 - TSS region transcription start site region 128265
Ddhd1 14 45593171 to 45658143 64972 - protein coding gene DDHD domain containing 1
Tssr128266 14 45595142 to 45595172 30 - TSS region transcription start site region 128266
Tssr128267 14 45598640 to 45598676 36 - TSS region transcription start site region 128267
Tssr128268 14 45610561 to 45610582 21 - TSS region transcription start site region 128268
Tssr128269 14 45610587 to 45610603 16 - TSS region transcription start site region 128269
Gm49125 14 45612772 to 45614066 1294 - unclassified gene predicted gene, 49125
Tssr128270 14 45648281 to 45648284 3 - TSS region transcription start site region 128270
Cpgi6365 14 45656713 to 45658670 1957 CpG island CpG island 6365
Mir5131 14 45657961 to 45658053 92 - miRNA gene microRNA 5131
Tssr128271 14 45657970 to 45658016 46 - TSS region transcription start site region 128271
Tssr128272 14 45658034 to 45658050 16 - TSS region transcription start site region 128272
Tssr128273 14 45658058 to 45658085 27 - TSS region transcription start site region 128273
Tssr128274 14 45658094 to 45658128 34 - TSS region transcription start site region 128274
Tssr128275 14 45658145 to 45658183 38 - TSS region transcription start site region 128275
A530076I17Rik 14 45660770 to 45668498 7728 - lincRNA gene RIKEN cDNA A530076I17 gene
Gm34360 14 45661477 to 45665793 4316 - lncRNA gene predicted gene, 34360
Tssr128276 14 45664418 to 45664425 7 - TSS region transcription start site region 128276
Gm15516 14 45713132 to 45713324 192 - pseudogene predicted gene 15516
Gm7206 14 45713347 to 45713826 479 + pseudogene predicted pseudogene 7206
Gm15218 14 45754689 to 45993170 238481 + lincRNA gene predicted gene 15218
Cpgi6366 14 45761012 to 45761263 251 CpG island CpG island 6366
Gm8317 14 45858076 to 45858546 470 - pseudogene predicted gene 8317
Gm15220 14 45919087 to 45919465 378 - pseudogene predicted gene 15220
Gm46475 14 45925934 to 45926197 263 + pseudogene predicted gene, 46475
Gm49192 14 45944000 to 45991037 47037 - lincRNA gene predicted gene, 49192
Gm6580 14 46027428 to 46028784 1356 + pseudogene predicted gene 6580
Gm37257 14 46044460 to 46061149 16689 - unclassified gene predicted gene, 37257
Tssr125224 14 46084024 to 46084026 2 + TSS region transcription start site region 125224
Gm1821 14 46084027 to 46084957 930 + pseudogene predicted gene 1821
Tssr125225 14 46173197 to 46173201 4 + TSS region transcription start site region 125225
D14Mit134 14 46196535 to 46196653 118 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 134
Tssr125226 14 46221105 to 46221124 19 + TSS region transcription start site region 125226
Gm34499 14 46221115 to 46227688 6573 + lncRNA gene predicted gene, 34499
Tssr125227 14 46221139 to 46221152 13 + TSS region transcription start site region 125227
Tssr125228 14 46379433 to 46379436 3 + TSS region transcription start site region 125228
Tssr125229 14 46379447 to 46379466 19 + TSS region transcription start site region 125229
Gm15217 14 46379524 to 46383608 4084 + protein coding gene predicted gene 15217
Cpgi6367 14 46380279 to 46380773 494 CpG island CpG island 6367
Bmp4 14 46383525 to 46390669 7144 - protein coding gene bone morphogenetic protein 4
D14Mit129 14 46383749 to 46383892 143 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 129
Cpgi6368 14 46385695 to 46386148 453 CpG island CpG island 6368
Tssr128277 14 46386426 to 46386436 10 - TSS region transcription start site region 128277
Cpgi6369 14 46387018 to 46389226 2208 CpG island CpG island 6369
Tssr128278 14 46387262 to 46387283 21 - TSS region transcription start site region 128278
Tssr128279 14 46387298 to 46387312 14 - TSS region transcription start site region 128279
Tssr125230 14 46387470 to 46387484 14 + TSS region transcription start site region 125230
Tssr125231 14 46387487 to 46387525 38 + TSS region transcription start site region 125231
Tssr125232 14 46387528 to 46387559 31 + TSS region transcription start site region 125232
Gm15222 14 46387954 to 46389450 1496 + antisense lncRNA gene predicted gene 15222
Tssr128280 14 46388362 to 46388396 34 - TSS region transcription start site region 128280
Cpgi6370 14 46390330 to 46390753 423 CpG island CpG island 6370
Tssr128281 14 46390476 to 46390491 15 - TSS region transcription start site region 128281
Tssr128282 14 46390501 to 46390529 28 - TSS region transcription start site region 128282
Tssr128283 14 46390576 to 46390606 30 - TSS region transcription start site region 128283
Tssr125233 14 46390782 to 46390793 11 + TSS region transcription start site region 125233
Cpgi6371 14 46398293 to 46398688 395 CpG island CpG island 6371
Gm15221 14 46436855 to 46454535 17680 + lincRNA gene predicted gene 15221
Gm48910 14 46454342 to 46456456 2114 - lincRNA gene predicted gene, 48910
Gm48911 14 46461162 to 46463520 2358 - lincRNA gene predicted gene, 48911
Gm34756 14 46481257 to 46493619 12362 + lincRNA gene predicted gene, 34756
Gm48912 14 46482225 to 46516442 34217 - lincRNA gene predicted gene, 48912
Tssr128284 14 46516435 to 46516470 35 - TSS region transcription start site region 128284
Gm49319 14 46528176 to 46637408 109232 - unclassified non-coding RNA gene predicted gene, 49319
E130120K24Rik 14 46546345 to 46557076 10731 + lincRNA gene RIKEN cDNA E130120K24 gene
Rubie 14 46568331 to 46575851 7520 - lincRNA gene RNA upstream of Bmp4 expressed in inner ear
Tssr128285 14 46575849 to 46575855 6 - TSS region transcription start site region 128285
Tssr128286 14 46597157 to 46597166 9 - TSS region transcription start site region 128286
4933425B07Rik 14 46602806 to 46637423 34617 - lincRNA gene RIKEN cDNA 4933425B07 gene
Gm18761 14 46607764 to 46608464 700 + pseudogene predicted gene, 18761
D14Mit152 14 46623176 to 46623296 120 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 152
Gm41146 14 46626311 to 46630097 3786 + lncRNA gene predicted gene, 41146
Tssr128287 14 46634427 to 46634432 5 - TSS region transcription start site region 128287
Tssr128288 14 46634458 to 46634469 11 - TSS region transcription start site region 128288
Tssr128289 14 46634489 to 46634494 5 - TSS region transcription start site region 128289
D330046F09Rik 14 46645817 to 46673775 27958 - lincRNA gene RIKEN cDNA D330046F09 gene
Gm48917 14 46671702 to 46681301 9599 + unclassified non-coding RNA gene predicted gene, 48917
Tssr128290 14 46673812 to 46673818 6 - TSS region transcription start site region 128290
Tssr128291 14 46673821 to 46673835 14 - TSS region transcription start site region 128291
Gm48924 14 46743215 to 46746399 3184 - lincRNA gene predicted gene, 48924
D14Mit141 14 46759537 to 46759676 139 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 141
Cia49 14 46759537 to 46759676 139 QTL collagen induced arthritis QTL 49
Cpgi6372 14 46760196 to 46761073 877 CpG island CpG island 6372
Cdkn3 14 46760465 to 46771530 11065 + protein coding gene cyclin-dependent kinase inhibitor 3
Tssr125234 14 46760526 to 46760557 31 + TSS region transcription start site region 125234
Tssr125235 14 46760567 to 46760626 59 + TSS region transcription start site region 125235
Cnih1 14 46775567 to 46788411 12844 - protein coding gene cornichon family AMPA receptor auxiliary protein 1
Cpgi6373 14 46787564 to 46788528 964 CpG island CpG island 6373
Gm48933 14 46787633 to 46788530 897 + antisense lncRNA gene predicted gene, 48933
Tssr128292 14 46788267 to 46788329 62 - TSS region transcription start site region 128292
Gm48939 14 46804135 to 46806151 2016 - unclassified gene predicted gene, 48939
Gmfb 14 46808149 to 46822242 14093 - protein coding gene glia maturation factor, beta
Tssr128293 14 46809273 to 46809285 12 - TSS region transcription start site region 128293
Cpgi6374 14 46821792 to 46822544 752 CpG island CpG island 6374
Tssr128294 14 46821932 to 46821975 43 - TSS region transcription start site region 128294
Tssr128295 14 46822030 to 46822061 31 - TSS region transcription start site region 128295
Tssr128296 14 46822122 to 46822135 13 - TSS region transcription start site region 128296
Tssr128297 14 46822136 to 46822167 31 - TSS region transcription start site region 128297
Tssr128298 14 46822171 to 46822222 51 - TSS region transcription start site region 128298
Tssr128299 14 46822232 to 46822266 34 - TSS region transcription start site region 128299
Gm10101 14 46829109 to 46832027 2918 - bidirectional promoter lncRNA gene predicted gene 10101
Cpgi6375 14 46831716 to 46832721 1005 CpG island CpG island 6375
Tssr128300 14 46831984 to 46832057 73 - TSS region transcription start site region 128300
Tssr125236 14 46832099 to 46832112 13 + TSS region transcription start site region 125236
Cgrrf1 14 46832125 to 46854193 22068 + protein coding gene cell growth regulator with ring finger domain 1
Tssr125237 14 46832127 to 46832151 24 + TSS region transcription start site region 125237
Tssr125238 14 46832152 to 46832166 14 + TSS region transcription start site region 125238
Tssr125239 14 46832210 to 46832274 64 + TSS region transcription start site region 125239
Gm48949 14 46844813 to 46845480 667 + sense intronic lncRNA gene predicted gene, 48949
Gm34934 14 46878960 to 46882767 3807 - lincRNA gene predicted gene, 34934
Cpgi6376 14 46881990 to 46885151 3161 CpG island CpG island 6376
Tssr125240 14 46882931 to 46882936 5 + TSS region transcription start site region 125240
Tssr125241 14 46882958 to 46882973 15 + TSS region transcription start site region 125241
Samd4 14 46882965 to 47105817 222852 + protein coding gene sterile alpha motif domain containing 4
Tssr125242 14 46882994 to 46882999 5 + TSS region transcription start site region 125242
2810457G06Rik 14 46883698 to 46885064 1366 - antisense lncRNA gene RIKEN cDNA 2810457G06 gene
Tssr4382 14 46884030 to 46884050 20 + TSS region transcription start site region 4382
Tssr125243 14 46884576 to 46884585 9 + TSS region transcription start site region 125243
Tssr128301 14 46884987 to 46885029 42 - TSS region transcription start site region 128301
Tssr125244 14 46889330 to 46889335 5 + TSS region transcription start site region 125244
Tssr125245 14 46889361 to 46889378 17 + TSS region transcription start site region 125245
Gm48958 14 46893520 to 46896483 2963 + unclassified gene predicted gene, 48958
Tssr125246 14 46899426 to 46899445 19 + TSS region transcription start site region 125246
Tssr128302 14 46901608 to 46901609 1 - TSS region transcription start site region 128302
D14Mit59 14 46912408 to 46912610 202 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 59
Cpgi6377 14 46932200 to 46932424 224 CpG island CpG island 6377
Mir378c 14 46954830 to 46954928 98 - miRNA gene microRNA 378c
Gm15562 14 46961440 to 46965684 4244 + sense intronic lncRNA gene predicted gene 15562
Tssr125247 14 47001336 to 47001343 7 + TSS region transcription start site region 125247
Tssr125248 14 47001354 to 47001377 23 + TSS region transcription start site region 125248
Tssr125249 14 47001379 to 47001393 14 + TSS region transcription start site region 125249
Tssr125250 14 47062870 to 47062874 4 + TSS region transcription start site region 125250
Tssr4383 14 47064996 to 47065003 7 + TSS region transcription start site region 4383
Tssr125251 14 47066417 to 47066439 22 + TSS region transcription start site region 125251
Tssr125252 14 47068938 to 47068948 10 + TSS region transcription start site region 125252
Tssr125253 14 47068962 to 47068983 21 + TSS region transcription start site region 125253
Tssr125254 14 47068993 to 47069032 39 + TSS region transcription start site region 125254
Tssr125255 14 47069040 to 47069049 9 + TSS region transcription start site region 125255
Cpgi6378 14 47073929 to 47074242 313 CpG island CpG island 6378
Cpgi6379 14 47086753 to 47087037 284 CpG island CpG island 6379
Tssr125256 14 47087525 to 47087530 5 + TSS region transcription start site region 125256
Gm10371 14 47097679 to 47116161 18482 - antisense lncRNA gene predicted gene 10371
Tssr4384 14 47097748 to 47097752 4 + TSS region transcription start site region 4384
Hcbip1 14 47097793 to 59725144 12627351 QTL hexachlorobenzene induced porphyria 1
D14Mit60 14 47097793 to 47097924 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 60
Cia17 14 47097793 to 47097924 131 QTL collagen induced arthritis QTL 17
Ath13 14 47097793 to 47097924 131 QTL atherosclerosis 13
Gm49132 14 47116296 to 47120439 4143 + unclassified gene predicted gene, 49132
Gch1 14 47153895 to 47189402 35507 - protein coding gene GTP cyclohydrolase 1
Gm49134 14 47162377 to 47162634 257 + pseudogene predicted gene, 49134
Tssr128303 14 47167747 to 47167766 19 - TSS region transcription start site region 128303
Tssr128304 14 47167793 to 47167811 18 - TSS region transcription start site region 128304
Tssr128305 14 47167822 to 47167835 13 - TSS region transcription start site region 128305
Tssr128306 14 47167890 to 47167909 19 - TSS region transcription start site region 128306
Tssr128307 14 47175648 to 47175664 16 - TSS region transcription start site region 128307
Tssr128308 14 47177304 to 47177337 33 - TSS region transcription start site region 128308
Tssr128309 14 47177838 to 47177861 23 - TSS region transcription start site region 128309
Tssr128310 14 47177875 to 47177886 11 - TSS region transcription start site region 128310
Gm18811 14 47177883 to 47178546 663 - pseudogene predicted gene, 18811
Tssr128311 14 47186953 to 47186957 4 - TSS region transcription start site region 128311
Cpgi6380 14 47188521 to 47189730 1209 CpG island CpG island 6380
Tssr128312 14 47189406 to 47189419 13 - TSS region transcription start site region 128312
Tssr125257 14 47189626 to 47189646 20 + TSS region transcription start site region 125257