Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:45351713-45963670

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi6361 14 45350918 to 45351861 943 CpG island CpG island 6361
Styx 14 45351186 to 45376884 25698 + protein coding gene serine/threonine/tyrosine interaction protein
Tssr125219 14 45358761 to 45358765 4 + TSS region transcription start site region 125219
Gnpnat1 14 45376421 to 45388956 12535 - protein coding gene glucosamine-phosphate N-acetyltransferase 1
Cpgi6362 14 45388449 to 45389374 925 CpG island CpG island 6362
Tssr128251 14 45388747 to 45388758 11 - TSS region transcription start site region 128251
Tssr128252 14 45388772 to 45388836 64 - TSS region transcription start site region 128252
Tssr125220 14 45389028 to 45389076 48 + TSS region transcription start site region 125220
Tssr125221 14 45391679 to 45391687 8 + TSS region transcription start site region 125221
Gm41143 14 45391733 to 45422370 30637 + lncRNA gene predicted gene, 41143
Gm25353 14 45404840 to 45404960 120 - miRNA gene predicted gene, 25353
Tssr128253 14 45442476 to 45442496 20 - TSS region transcription start site region 128253
Gm34250 14 45442754 to 45447073 4319 - lincRNA gene predicted gene, 34250
Tssr128254 14 45444966 to 45444968 2 - TSS region transcription start site region 128254
Fermt2 14 45458792 to 45530113 71321 - protein coding gene fermitin family member 2
Gm22637 14 45461363 to 45461645 282 - unclassified non-coding RNA gene predicted gene, 22637
Tssr128255 14 45477852 to 45477855 3 - TSS region transcription start site region 128255
Tssr128256 14 45477856 to 45477870 14 - TSS region transcription start site region 128256
Tssr128257 14 45477872 to 45477883 11 - TSS region transcription start site region 128257
9630050E16Rik 14 45484645 to 45492085 7440 - unclassified gene RIKEN cDNA 9630050E16 gene
Cpgi6363 14 45529184 to 45530804 1620 CpG island CpG island 6363
Tssr128258 14 45529550 to 45529621 71 - TSS region transcription start site region 128258
Tssr128259 14 45529775 to 45529841 66 - TSS region transcription start site region 128259
Tssr128260 14 45529990 to 45530019 29 - TSS region transcription start site region 128260
Tssr128261 14 45530020 to 45530056 36 - TSS region transcription start site region 128261
Tssr128262 14 45530130 to 45530182 52 - TSS region transcription start site region 128262
Tssr128263 14 45530188 to 45530219 31 - TSS region transcription start site region 128263
Tssr128264 14 45530251 to 45530282 31 - TSS region transcription start site region 128264
Gm46452 14 45530470 to 45538946 8476 + lncRNA gene predicted gene, 46452
Gm41144 14 45541173 to 45543567 2394 - lincRNA gene predicted gene, 41144
Tssr125222 14 45543675 to 45543692 17 + TSS region transcription start site region 125222
4930527F14Rik 14 45543710 to 45562877 19167 + bidirectional promoter lncRNA gene RIKEN cDNA 4930527F14 gene
Gm49123 14 45551838 to 45554402 2564 - lincRNA gene predicted gene, 49123
Gm5206 14 45557443 to 45558271 828 - pseudogene predicted pseudogene 5206
Gm15601 14 45563834 to 45598512 34678 + antisense lncRNA gene predicted gene 15601
Gm49124 14 45565531 to 45586120 20589 + lincRNA gene predicted gene, 49124
Cpgi6364 14 45566334 to 45566733 399 CpG island CpG island 6364
Tssr125223 14 45573536 to 45573538 2 + TSS region transcription start site region 125223
Gm41145 14 45573816 to 45582167 8351 - lncRNA gene predicted gene, 41145
Tssr128265 14 45582032 to 45582040 8 - TSS region transcription start site region 128265
Ddhd1 14 45593171 to 45658143 64972 - protein coding gene DDHD domain containing 1
Tssr128266 14 45595142 to 45595172 30 - TSS region transcription start site region 128266
Tssr128267 14 45598640 to 45598676 36 - TSS region transcription start site region 128267
Tssr128268 14 45610561 to 45610582 21 - TSS region transcription start site region 128268
Tssr128269 14 45610587 to 45610603 16 - TSS region transcription start site region 128269
Gm49125 14 45612772 to 45614066 1294 - unclassified gene predicted gene, 49125
Tssr128270 14 45648281 to 45648284 3 - TSS region transcription start site region 128270
Cpgi6365 14 45656713 to 45658670 1957 CpG island CpG island 6365
Mir5131 14 45657961 to 45658053 92 - miRNA gene microRNA 5131
Tssr128271 14 45657970 to 45658016 46 - TSS region transcription start site region 128271
Tssr128272 14 45658034 to 45658050 16 - TSS region transcription start site region 128272
Tssr128273 14 45658058 to 45658085 27 - TSS region transcription start site region 128273
Tssr128274 14 45658094 to 45658128 34 - TSS region transcription start site region 128274
Tssr128275 14 45658145 to 45658183 38 - TSS region transcription start site region 128275
A530076I17Rik 14 45660770 to 45668498 7728 - lincRNA gene RIKEN cDNA A530076I17 gene
Gm34360 14 45661477 to 45665793 4316 - lncRNA gene predicted gene, 34360
Tssr128276 14 45664418 to 45664425 7 - TSS region transcription start site region 128276
Gm15516 14 45713132 to 45713324 192 - pseudogene predicted gene 15516
Gm7206 14 45713347 to 45713826 479 + pseudogene predicted pseudogene 7206
Gm15218 14 45754689 to 45993170 238481 + lincRNA gene predicted gene 15218
Cpgi6366 14 45761012 to 45761263 251 CpG island CpG island 6366
Gm8317 14 45858076 to 45858546 470 - pseudogene predicted gene 8317
Gm15220 14 45919087 to 45919465 378 - pseudogene predicted gene 15220
Gm46475 14 45925934 to 45926197 263 + pseudogene predicted gene, 46475
Gm49192 14 45944000 to 45991037 47037 - lincRNA gene predicted gene, 49192