Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:44741702-48611301

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482 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq4 14 12546018 to 48527625 35981607 QTL modifier of retinal degeneration QTL 4
Gm34060 14 44750397 to 44765684 15287 + lincRNA gene predicted gene, 34060
Gm49142 14 44753446 to 44753631 185 + pseudogene predicted gene, 49142
Gm41141 14 44758109 to 44761831 3722 - lncRNA gene predicted gene, 41141
Tssr128217 14 44772461 to 44772466 5 - TSS region transcription start site region 128217
Gm17187 14 44777463 to 44779762 2299 + pseudogene predicted gene 17187
Gm49143 14 44782571 to 44783601 1030 - pseudogene predicted gene, 49143
Tssr128218 14 44789935 to 44789940 5 - TSS region transcription start site region 128218
Gm17070 14 44804701 to 44805484 783 - pseudogene predicted gene 17070
Gm49145 14 44821886 to 44834142 12256 + lincRNA gene predicted gene, 49145
Gm34198 14 44846050 to 44846350 300 + lncRNA gene predicted gene, 34198
Ptgdr 14 44851235 to 44859375 8140 - protein coding gene prostaglandin D receptor
Cpgi6356 14 44858755 to 44859338 583 CpG island CpG island 6356
Gm16976 14 44858954 to 44974953 115999 + unclassified non-coding RNA gene predicted gene, 16976
Tssr128219 14 44859348 to 44859364 16 - TSS region transcription start site region 128219
Tssr128220 14 44859370 to 44859381 11 - TSS region transcription start site region 128220
Gm18524 14 44905748 to 44906516 768 + pseudogene predicted gene, 18524
Tssr125198 14 44926818 to 44926824 6 + TSS region transcription start site region 125198
Gm49148 14 44933163 to 44934206 1043 + pseudogene predicted gene, 49148
Gm49147 14 44939102 to 44939266 164 - pseudogene predicted gene, 49147
Gm41142 14 44944488 to 44957540 13052 + lncRNA gene predicted gene, 41142
Mir327 14 44947443 to 44947511 68 - miRNA gene microRNA 327
4930431P03Rik 14 44955215 to 44961326 6111 - lncRNA gene RIKEN cDNA 4930431P03 gene
Gm49364 14 44955217 to 44989699 34482 - unclassified non-coding RNA gene predicted gene, 49364
Gm17173 14 44972268 to 45006900 34632 - antisense lncRNA gene predicted gene 17173
Tssr125199 14 44988164 to 44988178 14 + TSS region transcription start site region 125199
Tssr125200 14 44988192 to 44988203 11 + TSS region transcription start site region 125200
Ptger2 14 44988195 to 45003820 15625 + protein coding gene prostaglandin E receptor 2 (subtype EP2)
Tssr125201 14 44988456 to 44988472 16 + TSS region transcription start site region 125201
Tssr125202 14 44988576 to 44988611 35 + TSS region transcription start site region 125202
Tssr125203 14 44988653 to 44988672 19 + TSS region transcription start site region 125203
Cpgi6357 14 44988725 to 44989852 1127 CpG island CpG island 6357
Tssr4380 14 44988768 to 44988812 44 - TSS region transcription start site region 4380
Tssr125204 14 44988896 to 44988919 23 + TSS region transcription start site region 125204
Tssr128221 14 44989673 to 44989679 6 - TSS region transcription start site region 128221
Tssr128222 14 44989850 to 44989870 20 - TSS region transcription start site region 128222
Tssr128223 14 44989902 to 44989926 24 - TSS region transcription start site region 128223
Tssr125205 14 44997170 to 44997191 21 + TSS region transcription start site region 125205
Tssr125206 14 45038177 to 45038179 2 + TSS region transcription start site region 125206
Tssr128224 14 45041198 to 45041222 24 - TSS region transcription start site region 128224
Gm49180 14 45056497 to 45102094 45597 - lincRNA gene predicted gene, 49180
Gm21010 14 45090615 to 45091900 1285 + pseudogene predicted gene, 21010
Tssr128225 14 45102327 to 45102356 29 - TSS region transcription start site region 128225
Gm49181 14 45113704 to 45114112 408 - pseudogene predicted gene, 49181
Gm49183 14 45114401 to 45114708 307 - pseudogene predicted gene, 49183
Gm49184 14 45130034 to 45130384 350 + pseudogene predicted gene, 49184
Txndc16 14 45134448 to 45219538 85090 - protein coding gene thioredoxin domain containing 16
Tssr125207 14 45155739 to 45155746 7 + TSS region transcription start site region 125207
Tssr125208 14 45155818 to 45155843 25 + TSS region transcription start site region 125208
Tssr128226 14 45158447 to 45158450 3 - TSS region transcription start site region 128226
Tssr128227 14 45173583 to 45173612 29 - TSS region transcription start site region 128227
Gm34362 14 45175038 to 45176705 1667 - protein coding gene predicted gene, 34362
Gm15765 14 45211523 to 45212432 909 + pseudogene predicted gene 15765
Tssr128228 14 45218983 to 45218997 14 - TSS region transcription start site region 128228
Cpgi6358 14 45218993 to 45220991 1998 CpG island CpG island 6358
Tssr128229 14 45219246 to 45219257 11 - TSS region transcription start site region 128229
Tssr128230 14 45219273 to 45219308 35 - TSS region transcription start site region 128230
Tssr128231 14 45219334 to 45219345 11 - TSS region transcription start site region 128231
Tssr128232 14 45219364 to 45219428 64 - TSS region transcription start site region 128232
Tssr128233 14 45219435 to 45219446 11 - TSS region transcription start site region 128233
Tssr125209 14 45219711 to 45219725 14 + TSS region transcription start site region 125209
Gpr137c 14 45219717 to 45282725 63008 + protein coding gene G protein-coupled receptor 137C
Tssr125210 14 45219744 to 45219775 31 + TSS region transcription start site region 125210
Tssr128234 14 45220741 to 45220761 20 - TSS region transcription start site region 128234
Tssr128235 14 45270197 to 45270205 8 - TSS region transcription start site region 128235
Gm49194 14 45273250 to 45274723 1473 + sense intronic lncRNA gene predicted gene, 49194
Tssr125211 14 45276052 to 45276069 17 + TSS region transcription start site region 125211
Tssr4381 14 45276081 to 45276086 5 + TSS region transcription start site region 4381
Ero1l 14 45283087 to 45318572 35485 - protein coding gene ERO1-like (S. cerevisiae)
Tssr128236 14 45285353 to 45285366 13 - TSS region transcription start site region 128236
Tssr128237 14 45285929 to 45285971 42 - TSS region transcription start site region 128237
Tssr128238 14 45285972 to 45285994 22 - TSS region transcription start site region 128238
Tssr128239 14 45287845 to 45287863 18 - TSS region transcription start site region 128239
Tssr128240 14 45295864 to 45295875 11 - TSS region transcription start site region 128240
Tssr128241 14 45295879 to 45295915 36 - TSS region transcription start site region 128241
Tssr128242 14 45295963 to 45295976 13 - TSS region transcription start site region 128242
Tssr125212 14 45299879 to 45299927 48 + TSS region transcription start site region 125212
Tssr128243 14 45299956 to 45299969 13 - TSS region transcription start site region 128243
Tssr128244 14 45306211 to 45306216 5 - TSS region transcription start site region 128244
Tssr128245 14 45313356 to 45313393 37 - TSS region transcription start site region 128245
Tssr128246 14 45314789 to 45314795 6 - TSS region transcription start site region 128246
Cpgi6359 14 45317935 to 45319050 1115 CpG island CpG island 6359
Tssr128247 14 45318509 to 45318520 11 - TSS region transcription start site region 128247
Tssr128248 14 45318530 to 45318546 16 - TSS region transcription start site region 128248
Tssr128249 14 45318556 to 45318579 23 - TSS region transcription start site region 128249
Tssr128250 14 45318727 to 45318770 43 - TSS region transcription start site region 128250
Cpgi6360 14 45329565 to 45330390 825 CpG island CpG island 6360
Tssr125213 14 45329800 to 45329811 11 + TSS region transcription start site region 125213
Tssr125214 14 45329815 to 45329849 34 + TSS region transcription start site region 125214
Psmc6 14 45329824 to 45349071 19247 + protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase, 6
Tssr125215 14 45337513 to 45337531 18 + TSS region transcription start site region 125215
Tssr125216 14 45341275 to 45341310 35 + TSS region transcription start site region 125216
Cpgi6361 14 45350918 to 45351861 943 CpG island CpG island 6361
Tssr125217 14 45351052 to 45351084 32 + TSS region transcription start site region 125217
Tssr125218 14 45351177 to 45351209 32 + TSS region transcription start site region 125218
Styx 14 45351186 to 45376884 25698 + protein coding gene serine/threonine/tyrosine interaction protein
Tssr125219 14 45358761 to 45358765 4 + TSS region transcription start site region 125219
Gnpnat1 14 45376421 to 45388956 12535 - protein coding gene glucosamine-phosphate N-acetyltransferase 1
Cpgi6362 14 45388449 to 45389374 925 CpG island CpG island 6362
Tssr128251 14 45388747 to 45388758 11 - TSS region transcription start site region 128251
Tssr128252 14 45388772 to 45388836 64 - TSS region transcription start site region 128252
Tssr125220 14 45389028 to 45389076 48 + TSS region transcription start site region 125220
Tssr125221 14 45391679 to 45391687 8 + TSS region transcription start site region 125221
Gm41143 14 45391733 to 45422370 30637 + lncRNA gene predicted gene, 41143
Gm25353 14 45404840 to 45404960 120 - miRNA gene predicted gene, 25353
Tssr128253 14 45442476 to 45442496 20 - TSS region transcription start site region 128253
Gm34250 14 45442754 to 45447073 4319 - lincRNA gene predicted gene, 34250
Tssr128254 14 45444966 to 45444968 2 - TSS region transcription start site region 128254
Fermt2 14 45458792 to 45530113 71321 - protein coding gene fermitin family member 2
Gm22637 14 45461363 to 45461645 282 - unclassified non-coding RNA gene predicted gene, 22637
Tssr128255 14 45477852 to 45477855 3 - TSS region transcription start site region 128255
Tssr128256 14 45477856 to 45477870 14 - TSS region transcription start site region 128256
Tssr128257 14 45477872 to 45477883 11 - TSS region transcription start site region 128257
9630050E16Rik 14 45484645 to 45492085 7440 - unclassified gene RIKEN cDNA 9630050E16 gene
Cpgi6363 14 45529184 to 45530804 1620 CpG island CpG island 6363
Tssr128258 14 45529550 to 45529621 71 - TSS region transcription start site region 128258
Tssr128259 14 45529775 to 45529841 66 - TSS region transcription start site region 128259
Tssr128260 14 45529990 to 45530019 29 - TSS region transcription start site region 128260
Tssr128261 14 45530020 to 45530056 36 - TSS region transcription start site region 128261
Tssr128262 14 45530130 to 45530182 52 - TSS region transcription start site region 128262
Tssr128263 14 45530188 to 45530219 31 - TSS region transcription start site region 128263
Tssr128264 14 45530251 to 45530282 31 - TSS region transcription start site region 128264
Gm46452 14 45530470 to 45538946 8476 + lncRNA gene predicted gene, 46452
Gm41144 14 45541173 to 45543567 2394 - lincRNA gene predicted gene, 41144
Tssr125222 14 45543675 to 45543692 17 + TSS region transcription start site region 125222
4930527F14Rik 14 45543710 to 45562877 19167 + bidirectional promoter lncRNA gene RIKEN cDNA 4930527F14 gene
Gm49123 14 45551838 to 45554402 2564 - lincRNA gene predicted gene, 49123
Gm5206 14 45557443 to 45558271 828 - pseudogene predicted pseudogene 5206
Gm15601 14 45563834 to 45598512 34678 + antisense lncRNA gene predicted gene 15601
Gm49124 14 45565531 to 45586120 20589 + lincRNA gene predicted gene, 49124
Cpgi6364 14 45566334 to 45566733 399 CpG island CpG island 6364
Tssr125223 14 45573536 to 45573538 2 + TSS region transcription start site region 125223
Gm41145 14 45573816 to 45582167 8351 - lncRNA gene predicted gene, 41145
Tssr128265 14 45582032 to 45582040 8 - TSS region transcription start site region 128265
Ddhd1 14 45593171 to 45658143 64972 - protein coding gene DDHD domain containing 1
Tssr128266 14 45595142 to 45595172 30 - TSS region transcription start site region 128266
Tssr128267 14 45598640 to 45598676 36 - TSS region transcription start site region 128267
Tssr128268 14 45610561 to 45610582 21 - TSS region transcription start site region 128268
Tssr128269 14 45610587 to 45610603 16 - TSS region transcription start site region 128269
Gm49125 14 45612772 to 45614066 1294 - unclassified gene predicted gene, 49125
Tssr128270 14 45648281 to 45648284 3 - TSS region transcription start site region 128270
Cpgi6365 14 45656713 to 45658670 1957 CpG island CpG island 6365
Mir5131 14 45657961 to 45658053 92 - miRNA gene microRNA 5131
Tssr128271 14 45657970 to 45658016 46 - TSS region transcription start site region 128271
Tssr128272 14 45658034 to 45658050 16 - TSS region transcription start site region 128272
Tssr128273 14 45658058 to 45658085 27 - TSS region transcription start site region 128273
Tssr128274 14 45658094 to 45658128 34 - TSS region transcription start site region 128274
Tssr128275 14 45658145 to 45658183 38 - TSS region transcription start site region 128275
A530076I17Rik 14 45660770 to 45668498 7728 - lincRNA gene RIKEN cDNA A530076I17 gene
Gm34360 14 45661477 to 45665793 4316 - lncRNA gene predicted gene, 34360
Tssr128276 14 45664418 to 45664425 7 - TSS region transcription start site region 128276
Gm15516 14 45713132 to 45713324 192 - pseudogene predicted gene 15516
Gm7206 14 45713347 to 45713826 479 + pseudogene predicted pseudogene 7206
Gm15218 14 45754689 to 45993170 238481 + lincRNA gene predicted gene 15218
Cpgi6366 14 45761012 to 45761263 251 CpG island CpG island 6366
Gm8317 14 45858076 to 45858546 470 - pseudogene predicted gene 8317
Gm15220 14 45919087 to 45919465 378 - pseudogene predicted gene 15220
Gm46475 14 45925934 to 45926197 263 + pseudogene predicted gene, 46475
Gm49192 14 45944000 to 45991037 47037 - lincRNA gene predicted gene, 49192
Gm6580 14 46027428 to 46028784 1356 + pseudogene predicted gene 6580
Gm37257 14 46044460 to 46061149 16689 - unclassified gene predicted gene, 37257
Tssr125224 14 46084024 to 46084026 2 + TSS region transcription start site region 125224
Gm1821 14 46084027 to 46084957 930 + pseudogene predicted gene 1821
Tssr125225 14 46173197 to 46173201 4 + TSS region transcription start site region 125225
D14Mit134 14 46196535 to 46196653 118 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 134
Tssr125226 14 46221105 to 46221124 19 + TSS region transcription start site region 125226
Gm34499 14 46221115 to 46227688 6573 + lncRNA gene predicted gene, 34499
Tssr125227 14 46221139 to 46221152 13 + TSS region transcription start site region 125227
Tssr125228 14 46379433 to 46379436 3 + TSS region transcription start site region 125228
Tssr125229 14 46379447 to 46379466 19 + TSS region transcription start site region 125229
Gm15217 14 46379524 to 46383608 4084 + protein coding gene predicted gene 15217
Cpgi6367 14 46380279 to 46380773 494 CpG island CpG island 6367
Bmp4 14 46383525 to 46390669 7144 - protein coding gene bone morphogenetic protein 4
D14Mit129 14 46383749 to 46383892 143 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 129
Cpgi6368 14 46385695 to 46386148 453 CpG island CpG island 6368
Tssr128277 14 46386426 to 46386436 10 - TSS region transcription start site region 128277
Cpgi6369 14 46387018 to 46389226 2208 CpG island CpG island 6369
Tssr128278 14 46387262 to 46387283 21 - TSS region transcription start site region 128278
Tssr128279 14 46387298 to 46387312 14 - TSS region transcription start site region 128279
Tssr125230 14 46387470 to 46387484 14 + TSS region transcription start site region 125230
Tssr125231 14 46387487 to 46387525 38 + TSS region transcription start site region 125231
Tssr125232 14 46387528 to 46387559 31 + TSS region transcription start site region 125232
Gm15222 14 46387954 to 46389450 1496 + antisense lncRNA gene predicted gene 15222
Tssr128280 14 46388362 to 46388396 34 - TSS region transcription start site region 128280
Cpgi6370 14 46390330 to 46390753 423 CpG island CpG island 6370
Tssr128281 14 46390476 to 46390491 15 - TSS region transcription start site region 128281
Tssr128282 14 46390501 to 46390529 28 - TSS region transcription start site region 128282
Tssr128283 14 46390576 to 46390606 30 - TSS region transcription start site region 128283
Tssr125233 14 46390782 to 46390793 11 + TSS region transcription start site region 125233
Cpgi6371 14 46398293 to 46398688 395 CpG island CpG island 6371
Gm15221 14 46436855 to 46454535 17680 + lincRNA gene predicted gene 15221
Gm48910 14 46454342 to 46456456 2114 - lincRNA gene predicted gene, 48910
Gm48911 14 46461162 to 46463520 2358 - lincRNA gene predicted gene, 48911
Gm34756 14 46481257 to 46493619 12362 + lincRNA gene predicted gene, 34756
Gm48912 14 46482225 to 46516442 34217 - lincRNA gene predicted gene, 48912
Tssr128284 14 46516435 to 46516470 35 - TSS region transcription start site region 128284
Gm49319 14 46528176 to 46637408 109232 - unclassified non-coding RNA gene predicted gene, 49319
E130120K24Rik 14 46546345 to 46557076 10731 + lincRNA gene RIKEN cDNA E130120K24 gene
Rubie 14 46568331 to 46575851 7520 - lincRNA gene RNA upstream of Bmp4 expressed in inner ear
Tssr128285 14 46575849 to 46575855 6 - TSS region transcription start site region 128285