Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:34537857-39638347

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226 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ldb3 14 34526603 to 34588682 62079 - protein coding gene LIM domain binding 3
Tssr128083 14 34541960 to 34541995 35 - TSS region transcription start site region 128083
Cpgi6333 14 34548589 to 34549706 1117 CpG island CpG island 6333
Tssr128084 14 34552210 to 34552222 12 - TSS region transcription start site region 128084
Tssr128085 14 34555466 to 34555493 27 - TSS region transcription start site region 128085
Tssr128086 14 34561737 to 34561751 14 - TSS region transcription start site region 128086
Cpgi6334 14 34565778 to 34565934 156 CpG island CpG island 6334
Tssr128087 14 34567529 to 34567550 21 - TSS region transcription start site region 128087
Cpgi6335 14 34569527 to 34569980 453 CpG island CpG island 6335
Tssr128088 14 34578629 to 34578641 12 - TSS region transcription start site region 128088
Tssr128089 14 34588626 to 34588637 11 - TSS region transcription start site region 128089
Tssr128090 14 34588654 to 34588669 15 - TSS region transcription start site region 128090
Tssr128091 14 34588681 to 34588690 9 - TSS region transcription start site region 128091
Tssr128092 14 34590284 to 34590297 13 - TSS region transcription start site region 128092
Opn4 14 34590618 to 34600142 9524 - protein coding gene opsin 4 (melanopsin)
Cpgi6336 14 34590959 to 34591204 245 CpG island CpG island 6336
Gm49012 14 34591092 to 34605700 14608 + antisense lncRNA gene predicted gene, 49012
Tssr128093 14 34600136 to 34600147 11 - TSS region transcription start site region 128093
Cpgi6337 14 34615097 to 34615312 215 CpG island CpG island 6337
Tssr128094 14 34620709 to 34620740 31 - TSS region transcription start site region 128094
Gm49024 14 34661707 to 34662704 997 + lincRNA gene predicted gene, 49024
Cpgi6338 14 34661850 to 34662473 623 CpG island CpG island 6338
Gm49025 14 34668031 to 34668339 308 - lincRNA gene predicted gene, 49025
5830448L01Rik 14 34672465 to 34673763 1298 - bidirectional promoter lncRNA gene RIKEN cDNA 5830448L01 gene
Cpgi6339 14 34673297 to 34674846 1549 CpG island CpG island 6339
Tssr128095 14 34673731 to 34673779 48 - TSS region transcription start site region 128095
Tssr125083 14 34673867 to 34673884 17 + TSS region transcription start site region 125083
Tssr125084 14 34673888 to 34673930 42 + TSS region transcription start site region 125084
Wapl 14 34673928 to 34747983 74055 + protein coding gene WAPL cohesin release factor
Tssr125085 14 34673948 to 34673965 17 + TSS region transcription start site region 125085
Tssr125086 14 34673996 to 34674014 18 + TSS region transcription start site region 125086
Tssr125087 14 34674054 to 34674065 11 + TSS region transcription start site region 125087
Tssr125088 14 34674152 to 34674205 53 + TSS region transcription start site region 125088
Tssr125089 14 34674206 to 34674232 26 + TSS region transcription start site region 125089
Tssr128096 14 34674255 to 34674286 31 - TSS region transcription start site region 128096
Tssr128097 14 34674640 to 34674674 34 - TSS region transcription start site region 128097
Tssr128098 14 34675085 to 34675097 12 - TSS region transcription start site region 128098
Tssr125090 14 34677075 to 34677090 15 + TSS region transcription start site region 125090
Tssr125091 14 34692530 to 34692543 13 + TSS region transcription start site region 125091
Tssr125092 14 34694287 to 34694310 23 + TSS region transcription start site region 125092
Tssr125093 14 34695001 to 34695013 12 + TSS region transcription start site region 125093
Tssr125094 14 34700728 to 34700736 8 + TSS region transcription start site region 125094
Tssr125095 14 34709868 to 34709872 4 + TSS region transcription start site region 125095
Tssr125096 14 34714925 to 34714935 10 + TSS region transcription start site region 125096
Tssr125097 14 34746836 to 34746841 5 + TSS region transcription start site region 125097
A930038B10Rik 14 34760195 to 34769371 9176 + lincRNA gene RIKEN cDNA A930038B10 gene
Gm49032 14 34768956 to 34770055 1099 - lincRNA gene predicted gene, 49032
Cpgi6340 14 34769039 to 34770096 1057 CpG island CpG island 6340
Gm30969 14 34774481 to 34778202 3721 + lncRNA gene predicted gene, 30969
Tssr125098 14 34774551 to 34774584 33 + TSS region transcription start site region 125098
Cpgi6341 14 34818864 to 34821460 2596 CpG island CpG island 6341
Tssr125099 14 34819811 to 34819834 23 + TSS region transcription start site region 125099
Tssr125100 14 34819840 to 34819856 16 + TSS region transcription start site region 125100
Tssr125101 14 34820095 to 34820153 58 + TSS region transcription start site region 125101
Grid1 14 34820108 to 35583379 763271 + protein coding gene glutamate receptor, ionotropic, delta 1
Cpgi6342 14 34822761 to 34823466 705 CpG island CpG island 6342
D14Mit79 14 34839292 to 34839459 167 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 79
Mir346 14 34894609 to 34894706 97 + miRNA gene microRNA 346
Cpgi6343 14 34896271 to 34896660 389 CpG island CpG island 6343
Tssr128099 14 34936106 to 34936109 3 - TSS region transcription start site region 128099
Tssr125102 14 35057177 to 35057180 3 + TSS region transcription start site region 125102
Tssr4372 14 35097435 to 35097436 1 + TSS region transcription start site region 4372
D14Mit17 14 35112101 to 35112239 138 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 17
Gm41133 14 35143145 to 35148770 5625 + lncRNA gene predicted gene, 41133
Gm49034 14 35219139 to 35219438 299 - pseudogene predicted gene, 49034
Tssr125103 14 35247420 to 35247427 7 + TSS region transcription start site region 125103
D14Mit54 14 35323840 to 35323971 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 54
Cosz2 14 35323840 to 68548287 33224447 QTL cocaine seizure 2
D14Mit149 14 35323850 to 35323971 121 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 149
Gm19016 14 35548132 to 35549126 994 - pseudogene predicted gene, 19016
Tssr4373 14 35568495 to 35568499 4 + TSS region transcription start site region 4373
Gm27617 14 35569953 to 35570120 167 + unclassified non-coding RNA gene predicted gene, 27617
Tssr125104 14 35580838 to 35580874 36 + TSS region transcription start site region 125104
4930596D02Rik 14 35809488 to 35811978 2490 - protein coding gene RIKEN cDNA 4930596D02 gene
Tssr128100 14 35811965 to 35811999 34 - TSS region transcription start site region 128100
Tssr128101 14 35812007 to 35812010 3 - TSS region transcription start site region 128101
Gm49039 14 35820609 to 35821060 451 + pseudogene predicted gene, 49039
Gm49040 14 35980994 to 35981268 274 + pseudogene predicted gene, 49040
Gm46474 14 36013948 to 36015385 1437 + pseudogene predicted gene, 46474
Gm19129 14 36050606 to 36051222 616 + pseudogene predicted gene, 19129
D14Mit53 14 36072579 to 36072735 156 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 53
Gm7853 14 36089359 to 36090816 1457 - pseudogene predicted gene 7853
4930474N05Rik 14 36094942 to 36097401 2459 + protein coding gene RIKEN cDNA 4930474N05 gene
Tssr4374 14 36094960 to 36094969 9 + TSS region transcription start site region 4374
Sluc13 14 36105647 to 36105769 122 QTL susceptibility to lung cancer 13
D14Mit120 14 36105647 to 36105769 122 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 120
Gm48663 14 36231441 to 36232041 600 - pseudogene predicted gene, 48663
Tssr125105 14 36316921 to 36316928 7 + TSS region transcription start site region 125105
Tssr125106 14 36317070 to 36317074 4 + TSS region transcription start site region 125106
Gm24394 14 36612117 to 36612239 122 + snoRNA gene predicted gene, 24394
Gm17940 14 36619421 to 36620087 666 + pseudogene predicted gene, 17940
Tssr125107 14 36659121 to 36659125 4 + TSS region transcription start site region 125107
Gm25204 14 36767425 to 36767530 105 + snRNA gene predicted gene, 25204
Tssr128102 14 36774496 to 36774501 5 - TSS region transcription start site region 128102
n-R5s46 14 36855929 to 36856044 115 - rRNA gene nuclear encoded rRNA 5S 46
Ccser2 14 36874936 to 36968772 93836 - protein coding gene coiled-coil serine rich 2
Tssr128103 14 36906271 to 36906302 31 - TSS region transcription start site region 128103
Tssr128104 14 36906305 to 36906315 10 - TSS region transcription start site region 128104
Tssr128105 14 36906316 to 36906323 7 - TSS region transcription start site region 128105
Tssr128106 14 36911420 to 36911453 33 - TSS region transcription start site region 128106
Tssr128107 14 36919314 to 36919352 38 - TSS region transcription start site region 128107
Tssr128108 14 36919375 to 36919385 10 - TSS region transcription start site region 128108
Tssr128109 14 36919427 to 36919443 16 - TSS region transcription start site region 128109
Tssr128110 14 36919513 to 36919539 26 - TSS region transcription start site region 128110
Tssr128111 14 36919551 to 36919562 11 - TSS region transcription start site region 128111
Tssr128112 14 36922414 to 36922417 3 - TSS region transcription start site region 128112
Tssr128113 14 36935546 to 36935553 7 - TSS region transcription start site region 128113
Tssr128114 14 36935560 to 36935578 18 - TSS region transcription start site region 128114
Tssr128115 14 36935587 to 36935590 3 - TSS region transcription start site region 128115
Tssr128116 14 36935615 to 36935618 3 - TSS region transcription start site region 128116
Cpgi6344 14 36968220 to 36969141 921 CpG island CpG island 6344
Tssr128117 14 36968679 to 36968738 59 - TSS region transcription start site region 128117
Tssr128118 14 36968747 to 36968766 19 - TSS region transcription start site region 128118
Tssr128119 14 36968769 to 36968793 24 - TSS region transcription start site region 128119
Tssr125108 14 36968864 to 36968882 18 + TSS region transcription start site region 125108
Gm31131 14 36968871 to 36984705 15834 + lncRNA gene predicted gene, 31131
Tssr125109 14 36970005 to 36970016 11 + TSS region transcription start site region 125109
Tssr125110 14 36970020 to 36970030 10 + TSS region transcription start site region 125110
Tssr125111 14 36970041 to 36970050 9 + TSS region transcription start site region 125111
Tssr125112 14 36970101 to 36970112 11 + TSS region transcription start site region 125112
Gm47885 14 37023959 to 37024534 575 - pseudogene predicted gene, 47885
Rgr 14 37034909 to 37048964 14055 - protein coding gene retinal G protein coupled receptor
Tssr128120 14 37048957 to 37048970 13 - TSS region transcription start site region 128120
Tssr4375 14 37049023 to 37049028 5 - TSS region transcription start site region 4375
Tssr125113 14 37054818 to 37054853 35 + TSS region transcription start site region 125113
Lrit1 14 37054830 to 37064946 10116 + protein coding gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 1
Tssr125114 14 37054859 to 37054862 3 + TSS region transcription start site region 125114
Cpgi6345 14 37057326 to 37057572 246 CpG island CpG island 6345
Lrit2 14 37067991 to 37073743 5752 + protein coding gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
Tssr125115 14 37068013 to 37068024 11 + TSS region transcription start site region 125115
Tssr125116 14 37068042 to 37068054 12 + TSS region transcription start site region 125116
Tssr125117 14 37068057 to 37068064 7 + TSS region transcription start site region 125117
Cdhr1 14 37077849 to 37098311 20462 - protein coding gene cadherin-related family member 1
Cpgi6346 14 37098005 to 37098501 496 CpG island CpG island 6346
Tssr128121 14 37098211 to 37098280 69 - TSS region transcription start site region 128121
Tssr128122 14 37098348 to 37098363 15 - TSS region transcription start site region 128122
2610528A11Rik 14 37102140 to 37110101 7961 - protein coding gene RIKEN cDNA 2610528A11 gene
Tssr128123 14 37102238 to 37102250 12 - TSS region transcription start site region 128123
Tssr128124 14 37110025 to 37110061 36 - TSS region transcription start site region 128124
Tssr128125 14 37110065 to 37110077 12 - TSS region transcription start site region 128125
Tssr128126 14 37110087 to 37110106 19 - TSS region transcription start site region 128126
Tssr128127 14 37114012 to 37114027 15 - TSS region transcription start site region 128127
Ghitm 14 37120444 to 37135322 14878 - protein coding gene growth hormone inducible transmembrane protein
Tssr128128 14 37121633 to 37121649 16 - TSS region transcription start site region 128128
Tssr128129 14 37125308 to 37125334 26 - TSS region transcription start site region 128129
Tssr4376 14 37131254 to 37131271 17 - TSS region transcription start site region 4376
Cpgi6347 14 37134683 to 37135659 976 CpG island CpG island 6347
Tssr128130 14 37135089 to 37135098 9 - TSS region transcription start site region 128130
Tssr128131 14 37135126 to 37135141 15 - TSS region transcription start site region 128131
Tssr128132 14 37135153 to 37135172 19 - TSS region transcription start site region 128132
Tssr128133 14 37135186 to 37135197 11 - TSS region transcription start site region 128133
Tssr128134 14 37135230 to 37135241 11 - TSS region transcription start site region 128134
Tssr128135 14 37135245 to 37135271 26 - TSS region transcription start site region 128135
Tssr128136 14 37135274 to 37135308 34 - TSS region transcription start site region 128136
Tssr128137 14 37135310 to 37135321 11 - TSS region transcription start site region 128137
Tssr125118 14 37135473 to 37135501 28 + TSS region transcription start site region 125118
Tssr128138 14 37136006 to 37136015 9 - TSS region transcription start site region 128138
D14Mit150 14 37155938 to 37156075 137 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 150
Gm18834 14 37182238 to 37183016 778 - pseudogene predicted gene, 18834
D14Mit3 14 37209474 to 37209701 227 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 3
Gm22469 14 37224869 to 37225001 132 + snoRNA gene predicted gene, 22469
Tssr4377 14 37360570 to 37360572 2 + TSS region transcription start site region 4377
Gm23909 14 37437490 to 37437620 130 - snoRNA gene predicted gene, 23909
Gm47971 14 37465822 to 37467898 2076 - unclassified gene predicted gene, 47971
Tssr125119 14 37581098 to 37581101 3 + TSS region transcription start site region 125119
Tssr128139 14 37581836 to 37581841 5 - TSS region transcription start site region 128139
Gm31393 14 37601107 to 37606788 5681 - lincRNA gene predicted gene, 31393
Gm5203 14 37722117 to 37722937 820 + pseudogene predicted gene 5203
Gm5204 14 37911848 to 37912698 850 - pseudogene predicted gene 5204
Gm47974 14 38047983 to 38051136 3153 + pseudogene predicted gene, 47974
Gm18523 14 38074111 to 38074901 790 + pseudogene predicted gene, 18523
Tssr125120 14 38117696 to 38117698 2 + TSS region transcription start site region 125120
D14Mit247 14 38126774 to 38126921 147 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology-247
Gm31456 14 38317904 to 38337126 19222 + lincRNA gene predicted gene, 31456
Nrg3 14 38368952 to 39473088 1104136 - protein coding gene neuregulin 3
Tssr125121 14 38380449 to 38380471 22 + TSS region transcription start site region 125121
Gm3386 14 38380456 to 38380872 416 + pseudogene predicted gene 3386
Gm20641 14 38522049 to 38532311 10262 + antisense lncRNA gene predicted gene 20641
Tssr128140 14 38617938 to 38617941 3 - TSS region transcription start site region 128140
Tssr125122 14 38626747 to 38626750 3 + TSS region transcription start site region 125122
Tssr128141 14 38657975 to 38657990 15 - TSS region transcription start site region 128141
Tssr128142 14 38701910 to 38701914 4 - TSS region transcription start site region 128142
Tssr128143 14 38710437 to 38710440 3 - TSS region transcription start site region 128143
Gm46486 14 38802884 to 38898182 95298 - lncRNA gene predicted gene, 46486
Tssr128144 14 38804046 to 38804063 17 - TSS region transcription start site region 128144
Tssr128145 14 38833405 to 38833417 12 - TSS region transcription start site region 128145
Tssr128146 14 38833444 to 38833457 13 - TSS region transcription start site region 128146
A830055N07Rik 14 38851334 to 38856758 5424 unclassified gene RIKEN cDNA A830055N07 gene
Tssr128147 14 38880999 to 38881016 17 - TSS region transcription start site region 128147
Tssr128148 14 38898194 to 38898199 5 - TSS region transcription start site region 128148
Tssr125123 14 38898300 to 38898303 3 + TSS region transcription start site region 125123
Nrg3os 14 38898302 to 38958794 60492 + antisense lncRNA gene neuregulin 3, opposite strand
Gm27332 14 38899833 to 38899944 111 - miRNA gene predicted gene, 27332
9330199C07Rik 14 38936424 to 38937442 1018 unclassified gene RIKEN cDNA 9330199C07 gene
D14Mit213 14 38990242 to 38990343 101 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 213
Tssr128149 14 38998773 to 38998777 4 - TSS region transcription start site region 128149
Tssr128150 14 39001720 to 39001756 36 - TSS region transcription start site region 128150
Tssr128151 14 39146828 to 39146831 3 - TSS region transcription start site region 128151
Tssr128152 14 39208764 to 39208798 34 - TSS region transcription start site region 128152
Tssr125124 14 39220109 to 39220125 16 + TSS region transcription start site region 125124