Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:34167761-35478466

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr125067 14 34170640 to 34170641 1 + TSS region transcription start site region 125067
Rpl23a-ps3 14 34170655 to 34171122 467 + pseudogene ribosomal protein L23A, pseudogene 3
Gm18884 14 34175759 to 34176309 550 - pseudogene predicted gene, 18884
Gprin2 14 34185688 to 34201653 15965 - protein coding gene G protein regulated inducer of neurite outgrowth 2
Cpgi6326 14 34201116 to 34201885 769 CpG island CpG island 6326
Tssr128050 14 34201582 to 34201602 20 - TSS region transcription start site region 128050
Tssr128051 14 34201604 to 34201622 18 - TSS region transcription start site region 128051
Tssr128052 14 34201650 to 34201663 13 - TSS region transcription start site region 128052
Gm49168 14 34218076 to 34218385 309 + pseudogene predicted gene, 49168
Tssr125068 14 34218209 to 34218241 32 + TSS region transcription start site region 125068
Cpgi6327 14 34219769 to 34220231 462 CpG island CpG island 6327
Syt15 14 34219921 to 34230421 10500 + protein coding gene synaptotagmin XV
Tssr125069 14 34220028 to 34220058 30 + TSS region transcription start site region 125069
Gm49201 14 34230619 to 34231728 1109 - lincRNA gene predicted gene, 49201
Shld2 14 34237033 to 34310493 73460 - protein coding gene shieldin complex subunit 2
Tssr128053 14 34252574 to 34252581 7 - TSS region transcription start site region 128053
Gm18813 14 34260332 to 34261683 1351 + pseudogene predicted gene, 18813
Gm49203 14 34263123 to 34263536 413 + pseudogene predicted gene, 49203
Tssr128054 14 34274230 to 34274249 19 - TSS region transcription start site region 128054
Tssr128055 14 34274277 to 34274294 17 - TSS region transcription start site region 128055
Tssr128056 14 34275345 to 34275348 3 - TSS region transcription start site region 128056
Gm49202 14 34280843 to 34281179 336 + pseudogene predicted gene, 49202
Tssr125070 14 34307933 to 34307941 8 + TSS region transcription start site region 125070
Cpgi6328 14 34309954 to 34311528 1574 CpG island CpG island 6328
Tssr128057 14 34310355 to 34310383 28 - TSS region transcription start site region 128057
Tssr128058 14 34310388 to 34310400 12 - TSS region transcription start site region 128058
Tssr128059 14 34310539 to 34310560 21 - TSS region transcription start site region 128059
Tssr128060 14 34310563 to 34310585 22 - TSS region transcription start site region 128060
Cons5 14 34310727 to 34345033 34306 QTL consumption-saccharin intake 5
Glud1 14 34310727 to 34345033 34306 + protein coding gene glutamate dehydrogenase 1
Tssr125071 14 34310766 to 34310778 12 + TSS region transcription start site region 125071
Tssr125072 14 34310798 to 34310809 11 + TSS region transcription start site region 125072
Tssr125073 14 34310816 to 34310830 14 + TSS region transcription start site region 125073
Tssr125074 14 34311258 to 34311272 14 + TSS region transcription start site region 125074
Tssr125075 14 34319876 to 34319888 12 + TSS region transcription start site region 125075
Gm3219 14 34345281 to 34345583 302 + pseudogene predicted pseudogene 3219
Fam25c 14 34351882 to 34355393 3511 - protein coding gene family with sequence similarity 25, member C
Tssr128061 14 34355383 to 34355401 18 - TSS region transcription start site region 128061
D14Mit45 14 34357246 to 34357347 101 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 45
Tssr128062 14 34358255 to 34358264 9 - TSS region transcription start site region 128062
Tssr128063 14 34359046 to 34359068 22 - TSS region transcription start site region 128063
Tssr128064 14 34362297 to 34362320 23 - TSS region transcription start site region 128064
Tssr128065 14 34362361 to 34362377 16 - TSS region transcription start site region 128065
Tssr128066 14 34363228 to 34363248 20 - TSS region transcription start site region 128066
Cpgi6329 14 34363550 to 34364134 584 CpG island CpG island 6329
Gm41131 14 34365127 to 34367571 2444 + lncRNA gene predicted gene, 41131
Sncg 14 34370274 to 34374669 4395 - protein coding gene synuclein, gamma
Tssr128067 14 34374617 to 34374690 73 - TSS region transcription start site region 128067
Tssr125076 14 34375488 to 34375499 11 + TSS region transcription start site region 125076
Mmrn2 14 34375504 to 34404287 28783 + protein coding gene multimerin 2
Tssr125077 14 34375517 to 34375582 65 + TSS region transcription start site region 125077
Tssr125078 14 34376431 to 34376470 39 + TSS region transcription start site region 125078
Tssr128068 14 34378571 to 34378582 11 - TSS region transcription start site region 128068
Tssr125079 14 34378764 to 34378779 15 + TSS region transcription start site region 125079
Tssr125080 14 34378782 to 34378795 13 + TSS region transcription start site region 125080
Tssr125081 14 34378838 to 34378852 14 + TSS region transcription start site region 125081
Tssr128069 14 34379182 to 34379230 48 - TSS region transcription start site region 128069
Cpgi6330 14 34398775 to 34399068 293 CpG island CpG island 6330
Tssr128070 14 34403741 to 34403745 4 - TSS region transcription start site region 128070
Bmpr1a 14 34411068 to 34503461 92393 - protein coding gene bone morphogenetic protein receptor, type 1A
Tssr128071 14 34417287 to 34417293 6 - TSS region transcription start site region 128071
D14Mit189 14 34418566 to 34418667 101 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 189
Tssr128072 14 34422714 to 34422724 10 - TSS region transcription start site region 128072
Tssr128073 14 34422751 to 34422754 3 - TSS region transcription start site region 128073
Gm17110 14 34501715 to 34502684 969 + antisense lncRNA gene predicted gene 17110
Cpgi6331 14 34501773 to 34503449 1676 CpG island CpG island 6331
Tssr125082 14 34501943 to 34501962 19 + TSS region transcription start site region 125082
Tssr128074 14 34502522 to 34502574 52 - TSS region transcription start site region 128074
Tssr128075 14 34502634 to 34502657 23 - TSS region transcription start site region 128075
Tssr128076 14 34502663 to 34502715 52 - TSS region transcription start site region 128076
Tssr128077 14 34503224 to 34503231 7 - TSS region transcription start site region 128077
Tssr128078 14 34503240 to 34503250 10 - TSS region transcription start site region 128078
Tssr128079 14 34503254 to 34503281 27 - TSS region transcription start site region 128079
Tssr128080 14 34503294 to 34503318 24 - TSS region transcription start site region 128080
Tssr128081 14 34503323 to 34503345 22 - TSS region transcription start site region 128081
Tssr128082 14 34503352 to 34503371 19 - TSS region transcription start site region 128082
9230112D13Rik 14 34511621 to 34522801 11180 - protein coding gene RIKEN cDNA 9230112D13 gene
Gm48953 14 34516195 to 34516676 481 + pseudogene predicted gene, 48953
Cpgi6332 14 34523455 to 34523687 232 CpG island CpG island 6332
Ldb3 14 34526603 to 34588682 62079 - protein coding gene LIM domain binding 3
Tssr128083 14 34541960 to 34541995 35 - TSS region transcription start site region 128083
Cpgi6333 14 34548589 to 34549706 1117 CpG island CpG island 6333
Tssr128084 14 34552210 to 34552222 12 - TSS region transcription start site region 128084
Tssr128085 14 34555466 to 34555493 27 - TSS region transcription start site region 128085
Tssr128086 14 34561737 to 34561751 14 - TSS region transcription start site region 128086
Cpgi6334 14 34565778 to 34565934 156 CpG island CpG island 6334
Tssr128087 14 34567529 to 34567550 21 - TSS region transcription start site region 128087
Cpgi6335 14 34569527 to 34569980 453 CpG island CpG island 6335
Tssr128088 14 34578629 to 34578641 12 - TSS region transcription start site region 128088
Tssr128089 14 34588626 to 34588637 11 - TSS region transcription start site region 128089
Tssr128090 14 34588654 to 34588669 15 - TSS region transcription start site region 128090
Tssr128091 14 34588681 to 34588690 9 - TSS region transcription start site region 128091
Tssr128092 14 34590284 to 34590297 13 - TSS region transcription start site region 128092
Opn4 14 34590618 to 34600142 9524 - protein coding gene opsin 4 (melanopsin)
Cpgi6336 14 34590959 to 34591204 245 CpG island CpG island 6336
Gm49012 14 34591092 to 34605700 14608 + antisense lncRNA gene predicted gene, 49012
Tssr128093 14 34600136 to 34600147 11 - TSS region transcription start site region 128093
Cpgi6337 14 34615097 to 34615312 215 CpG island CpG island 6337
Tssr128094 14 34620709 to 34620740 31 - TSS region transcription start site region 128094
Gm49024 14 34661707 to 34662704 997 + lincRNA gene predicted gene, 49024
Cpgi6338 14 34661850 to 34662473 623 CpG island CpG island 6338
Gm49025 14 34668031 to 34668339 308 - lincRNA gene predicted gene, 49025
5830448L01Rik 14 34672465 to 34673763 1298 - bidirectional promoter lncRNA gene RIKEN cDNA 5830448L01 gene
Cpgi6339 14 34673297 to 34674846 1549 CpG island CpG island 6339
Tssr128095 14 34673731 to 34673779 48 - TSS region transcription start site region 128095
Tssr125083 14 34673867 to 34673884 17 + TSS region transcription start site region 125083
Tssr125084 14 34673888 to 34673930 42 + TSS region transcription start site region 125084
Wapl 14 34673928 to 34747983 74055 + protein coding gene WAPL cohesin release factor
Tssr125085 14 34673948 to 34673965 17 + TSS region transcription start site region 125085
Tssr125086 14 34673996 to 34674014 18 + TSS region transcription start site region 125086
Tssr125087 14 34674054 to 34674065 11 + TSS region transcription start site region 125087
Tssr125088 14 34674152 to 34674205 53 + TSS region transcription start site region 125088
Tssr125089 14 34674206 to 34674232 26 + TSS region transcription start site region 125089
Tssr128096 14 34674255 to 34674286 31 - TSS region transcription start site region 128096
Tssr128097 14 34674640 to 34674674 34 - TSS region transcription start site region 128097
Tssr128098 14 34675085 to 34675097 12 - TSS region transcription start site region 128098
Tssr125090 14 34677075 to 34677090 15 + TSS region transcription start site region 125090
Tssr125091 14 34692530 to 34692543 13 + TSS region transcription start site region 125091
Tssr125092 14 34694287 to 34694310 23 + TSS region transcription start site region 125092
Tssr125093 14 34695001 to 34695013 12 + TSS region transcription start site region 125093
Tssr125094 14 34700728 to 34700736 8 + TSS region transcription start site region 125094
Tssr125095 14 34709868 to 34709872 4 + TSS region transcription start site region 125095
Tssr125096 14 34714925 to 34714935 10 + TSS region transcription start site region 125096
Tssr125097 14 34746836 to 34746841 5 + TSS region transcription start site region 125097
A930038B10Rik 14 34760195 to 34769371 9176 + lincRNA gene RIKEN cDNA A930038B10 gene
Gm49032 14 34768956 to 34770055 1099 - lincRNA gene predicted gene, 49032
Cpgi6340 14 34769039 to 34770096 1057 CpG island CpG island 6340
Gm30969 14 34774481 to 34778202 3721 + lncRNA gene predicted gene, 30969
Tssr125098 14 34774551 to 34774584 33 + TSS region transcription start site region 125098
Cpgi6341 14 34818864 to 34821460 2596 CpG island CpG island 6341
Tssr125099 14 34819811 to 34819834 23 + TSS region transcription start site region 125099
Tssr125100 14 34819840 to 34819856 16 + TSS region transcription start site region 125100
Tssr125101 14 34820095 to 34820153 58 + TSS region transcription start site region 125101
Grid1 14 34820108 to 35583379 763271 + protein coding gene glutamate receptor, ionotropic, delta 1
Cpgi6342 14 34822761 to 34823466 705 CpG island CpG island 6342
D14Mit79 14 34839292 to 34839459 167 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 79
Mir346 14 34894609 to 34894706 97 + miRNA gene microRNA 346
Cpgi6343 14 34896271 to 34896660 389 CpG island CpG island 6343
Tssr128099 14 34936106 to 34936109 3 - TSS region transcription start site region 128099
Tssr125102 14 35057177 to 35057180 3 + TSS region transcription start site region 125102
Tssr4372 14 35097435 to 35097436 1 + TSS region transcription start site region 4372
D14Mit17 14 35112101 to 35112239 138 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 17
Gm41133 14 35143145 to 35148770 5625 + lncRNA gene predicted gene, 41133
Gm49034 14 35219139 to 35219438 299 - pseudogene predicted gene, 49034
Tssr125103 14 35247420 to 35247427 7 + TSS region transcription start site region 125103
D14Mit54 14 35323840 to 35323971 131 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 54
Cosz2 14 35323840 to 68548287 33224447 QTL cocaine seizure 2
D14Mit149 14 35323850 to 35323971 121 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 149