Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:33462683-34642730

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr125033 14 33471532 to 33471540 8 + TSS region transcription start site region 125033
Tssr125034 14 33471565 to 33471582 17 + TSS region transcription start site region 125034
Tssr125035 14 33471583 to 33471593 10 + TSS region transcription start site region 125035
Frmpd2 14 33483501 to 33575269 91768 + protein coding gene FERM and PDZ domain containing 2
Tssr4370 14 33510929 to 33510932 3 - TSS region transcription start site region 4370
Cpgi6319 14 33589108 to 33589271 163 CpG island CpG island 6319
Ptpn20 14 33589207 to 33640754 51547 + protein coding gene protein tyrosine phosphatase, non-receptor type 20
Tssr125036 14 33589223 to 33589230 7 + TSS region transcription start site region 125036
Tssr125037 14 33589238 to 33589267 29 + TSS region transcription start site region 125037
Tssr125038 14 33590827 to 33590831 4 + TSS region transcription start site region 125038
Tssr128040 14 33609915 to 33609917 2 - TSS region transcription start site region 128040
Gm26228 14 33644495 to 33644601 106 + snRNA gene predicted gene, 26228
Tssr128041 14 33646338 to 33646345 7 - TSS region transcription start site region 128041
D14Mit15 14 33684360 to 33684510 150 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 15
Gm49108 14 33804266 to 33807041 2775 - lincRNA gene predicted gene, 49108
4930503F20Rik 14 33808075 to 33811283 3208 - lincRNA gene RIKEN cDNA 4930503F20 gene
Tssr4371 14 33890336 to 33890338 2 + TSS region transcription start site region 4371
Gm30031 14 33912524 to 33923149 10625 - lncRNA gene predicted gene, 30031
Cpgi6320 14 33923126 to 33924283 1157 CpG island CpG island 6320
Tssr125039 14 33923315 to 33923329 14 + TSS region transcription start site region 125039
Tssr125040 14 33923330 to 33923353 23 + TSS region transcription start site region 125040
Tssr125041 14 33923355 to 33923364 9 + TSS region transcription start site region 125041
Tssr125042 14 33923428 to 33923466 38 + TSS region transcription start site region 125042
Tssr125043 14 33923483 to 33923499 16 + TSS region transcription start site region 125043
Tssr125044 14 33923582 to 33923602 20 + TSS region transcription start site region 125044
Gdf10 14 33923587 to 33935285 11698 + protein coding gene growth differentiation factor 10
Tssr125045 14 33923610 to 33923637 27 + TSS region transcription start site region 125045
Tssr125046 14 33923643 to 33923685 42 + TSS region transcription start site region 125046
Tssr125047 14 33923689 to 33923700 11 + TSS region transcription start site region 125047
Tssr125048 14 33923800 to 33923812 12 + TSS region transcription start site region 125048
Cpgi6321 14 33931923 to 33932618 695 CpG island CpG island 6321
Tssr125049 14 33934866 to 33934879 13 + TSS region transcription start site region 125049
Tssr125050 14 33940971 to 33940982 11 + TSS region transcription start site region 125050
Tssr125051 14 33941021 to 33941052 31 + TSS region transcription start site region 125051
Gdf2 14 33941039 to 33947198 6159 + protein coding gene growth differentiation factor 2
Tssr125052 14 33941072 to 33941084 12 + TSS region transcription start site region 125052
Tssr125053 14 33953977 to 33954016 39 + TSS region transcription start site region 125053
Tssr125054 14 33954020 to 33954031 11 + TSS region transcription start site region 125054
Rbp3 14 33954022 to 33964216 10194 + protein coding gene retinol binding protein 3, interstitial
Tssr125055 14 33954040 to 33954059 19 + TSS region transcription start site region 125055
Cpgi6322 14 33954675 to 33954872 197 CpG island CpG island 6322
Cpgi6323 14 33955362 to 33956337 975 CpG island CpG island 6323
Zfp488 14 33967070 to 33978764 11694 - protein coding gene zinc finger protein 488
Cpgi6324 14 33978568 to 33978959 391 CpG island CpG island 6324
Tssr128042 14 33978751 to 33978791 40 - TSS region transcription start site region 128042
Tssr128043 14 33978801 to 33978812 11 - TSS region transcription start site region 128043
Gm30083 14 33988417 to 34015182 26765 - protein coding gene predicted gene, 30083
Tssr128044 14 34015175 to 34015187 12 - TSS region transcription start site region 128044
Tssr128045 14 34015188 to 34015204 16 - TSS region transcription start site region 128045
Gm5460 14 34016285 to 34047114 30829 + protein coding gene predicted gene 5460
Tssr125056 14 34017038 to 34017051 13 + TSS region transcription start site region 125056
Tssr125057 14 34017056 to 34017067 11 + TSS region transcription start site region 125057
Tssr125058 14 34017074 to 34017089 15 + TSS region transcription start site region 125058
A630023A22Rik 14 34051126 to 34102754 51628 - protein coding gene RIKEN cDNA A630023A22 gene
Tssr125059 14 34052683 to 34052730 47 + TSS region transcription start site region 125059
Antxrl 14 34052712 to 34076323 23611 + protein coding gene anthrax toxin receptor-like
Tssr125060 14 34052737 to 34052748 11 + TSS region transcription start site region 125060
Tssr125061 14 34053158 to 34053176 18 + TSS region transcription start site region 125061
Tssr125062 14 34053466 to 34053473 7 + TSS region transcription start site region 125062
Gm49129 14 34084753 to 34085085 332 + pseudogene predicted gene, 49129
Tssr125063 14 34085978 to 34086004 26 + TSS region transcription start site region 125063
Anxa8 14 34085981 to 34100571 14590 + protein coding gene annexin A8
Tssr125064 14 34086008 to 34086026 18 + TSS region transcription start site region 125064
Tssr125065 14 34091807 to 34091814 7 + TSS region transcription start site region 125065
Tssr125066 14 34092530 to 34092532 2 + TSS region transcription start site region 125066
Tssr128046 14 34102663 to 34102668 5 - TSS region transcription start site region 128046
Tssr128047 14 34102692 to 34102709 17 - TSS region transcription start site region 128047
Gm24998 14 34106156 to 34106244 88 + snoRNA gene predicted gene, 24998
Tssr128048 14 34117752 to 34117789 37 - TSS region transcription start site region 128048
Gm30556 14 34119596 to 34120861 1265 + lincRNA gene predicted gene, 30556
Gm7778 14 34139448 to 34139815 367 + pseudogene predicted gene 7778
Npy4r 14 34145646 to 34152419 6773 - protein coding gene neuropeptide Y receptor Y4
Cpgi6325 14 34152455 to 34152670 215 CpG island CpG island 6325
Tssr128049 14 34152473 to 34152486 13 - TSS region transcription start site region 128049
Tssr125067 14 34170640 to 34170641 1 + TSS region transcription start site region 125067
Rpl23a-ps3 14 34170655 to 34171122 467 + pseudogene ribosomal protein L23A, pseudogene 3
Gm18884 14 34175759 to 34176309 550 - pseudogene predicted gene, 18884
Gprin2 14 34185688 to 34201653 15965 - protein coding gene G protein regulated inducer of neurite outgrowth 2
Cpgi6326 14 34201116 to 34201885 769 CpG island CpG island 6326
Tssr128050 14 34201582 to 34201602 20 - TSS region transcription start site region 128050
Tssr128051 14 34201604 to 34201622 18 - TSS region transcription start site region 128051
Tssr128052 14 34201650 to 34201663 13 - TSS region transcription start site region 128052
Gm49168 14 34218076 to 34218385 309 + pseudogene predicted gene, 49168
Tssr125068 14 34218209 to 34218241 32 + TSS region transcription start site region 125068
Cpgi6327 14 34219769 to 34220231 462 CpG island CpG island 6327
Syt15 14 34219921 to 34230421 10500 + protein coding gene synaptotagmin XV
Tssr125069 14 34220028 to 34220058 30 + TSS region transcription start site region 125069
Gm49201 14 34230619 to 34231728 1109 - lincRNA gene predicted gene, 49201
Shld2 14 34237033 to 34310493 73460 - protein coding gene shieldin complex subunit 2
Tssr128053 14 34252574 to 34252581 7 - TSS region transcription start site region 128053
Gm18813 14 34260332 to 34261683 1351 + pseudogene predicted gene, 18813
Gm49203 14 34263123 to 34263536 413 + pseudogene predicted gene, 49203
Tssr128054 14 34274230 to 34274249 19 - TSS region transcription start site region 128054
Tssr128055 14 34274277 to 34274294 17 - TSS region transcription start site region 128055
Tssr128056 14 34275345 to 34275348 3 - TSS region transcription start site region 128056
Gm49202 14 34280843 to 34281179 336 + pseudogene predicted gene, 49202
Tssr125070 14 34307933 to 34307941 8 + TSS region transcription start site region 125070
Cpgi6328 14 34309954 to 34311528 1574 CpG island CpG island 6328
Tssr128057 14 34310355 to 34310383 28 - TSS region transcription start site region 128057
Tssr128058 14 34310388 to 34310400 12 - TSS region transcription start site region 128058
Tssr128059 14 34310539 to 34310560 21 - TSS region transcription start site region 128059
Tssr128060 14 34310563 to 34310585 22 - TSS region transcription start site region 128060
Glud1 14 34310727 to 34345033 34306 + protein coding gene glutamate dehydrogenase 1
Cons5 14 34310727 to 34345033 34306 QTL consumption-saccharin intake 5
Tssr125071 14 34310766 to 34310778 12 + TSS region transcription start site region 125071
Tssr125072 14 34310798 to 34310809 11 + TSS region transcription start site region 125072
Tssr125073 14 34310816 to 34310830 14 + TSS region transcription start site region 125073
Tssr125074 14 34311258 to 34311272 14 + TSS region transcription start site region 125074
Tssr125075 14 34319876 to 34319888 12 + TSS region transcription start site region 125075
Gm3219 14 34345281 to 34345583 302 + pseudogene predicted pseudogene 3219
Fam25c 14 34351882 to 34355393 3511 - protein coding gene family with sequence similarity 25, member C
Tssr128061 14 34355383 to 34355401 18 - TSS region transcription start site region 128061
D14Mit45 14 34357246 to 34357347 101 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 45
Tssr128062 14 34358255 to 34358264 9 - TSS region transcription start site region 128062
Tssr128063 14 34359046 to 34359068 22 - TSS region transcription start site region 128063
Tssr128064 14 34362297 to 34362320 23 - TSS region transcription start site region 128064
Tssr128065 14 34362361 to 34362377 16 - TSS region transcription start site region 128065
Tssr128066 14 34363228 to 34363248 20 - TSS region transcription start site region 128066
Cpgi6329 14 34363550 to 34364134 584 CpG island CpG island 6329
Gm41131 14 34365127 to 34367571 2444 + lncRNA gene predicted gene, 41131
Sncg 14 34370274 to 34374669 4395 - protein coding gene synuclein, gamma
Tssr128067 14 34374617 to 34374690 73 - TSS region transcription start site region 128067
Tssr125076 14 34375488 to 34375499 11 + TSS region transcription start site region 125076
Mmrn2 14 34375504 to 34404287 28783 + protein coding gene multimerin 2
Tssr125077 14 34375517 to 34375582 65 + TSS region transcription start site region 125077
Tssr125078 14 34376431 to 34376470 39 + TSS region transcription start site region 125078
Tssr128068 14 34378571 to 34378582 11 - TSS region transcription start site region 128068
Tssr125079 14 34378764 to 34378779 15 + TSS region transcription start site region 125079
Tssr125080 14 34378782 to 34378795 13 + TSS region transcription start site region 125080
Tssr125081 14 34378838 to 34378852 14 + TSS region transcription start site region 125081
Tssr128069 14 34379182 to 34379230 48 - TSS region transcription start site region 128069
Cpgi6330 14 34398775 to 34399068 293 CpG island CpG island 6330
Tssr128070 14 34403741 to 34403745 4 - TSS region transcription start site region 128070
Bmpr1a 14 34411068 to 34503461 92393 - protein coding gene bone morphogenetic protein receptor, type 1A
Tssr128071 14 34417287 to 34417293 6 - TSS region transcription start site region 128071
D14Mit189 14 34418566 to 34418667 101 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 189
Tssr128072 14 34422714 to 34422724 10 - TSS region transcription start site region 128072
Tssr128073 14 34422751 to 34422754 3 - TSS region transcription start site region 128073
Gm17110 14 34501715 to 34502684 969 + antisense lncRNA gene predicted gene 17110
Cpgi6331 14 34501773 to 34503449 1676 CpG island CpG island 6331
Tssr125082 14 34501943 to 34501962 19 + TSS region transcription start site region 125082
Tssr128074 14 34502522 to 34502574 52 - TSS region transcription start site region 128074
Tssr128075 14 34502634 to 34502657 23 - TSS region transcription start site region 128075
Tssr128076 14 34502663 to 34502715 52 - TSS region transcription start site region 128076
Tssr128077 14 34503224 to 34503231 7 - TSS region transcription start site region 128077
Tssr128078 14 34503240 to 34503250 10 - TSS region transcription start site region 128078
Tssr128079 14 34503254 to 34503281 27 - TSS region transcription start site region 128079
Tssr128080 14 34503294 to 34503318 24 - TSS region transcription start site region 128080
Tssr128081 14 34503323 to 34503345 22 - TSS region transcription start site region 128081
Tssr128082 14 34503352 to 34503371 19 - TSS region transcription start site region 128082
9230112D13Rik 14 34511621 to 34522801 11180 - protein coding gene RIKEN cDNA 9230112D13 gene
Gm48953 14 34516195 to 34516676 481 + pseudogene predicted gene, 48953
Cpgi6332 14 34523455 to 34523687 232 CpG island CpG island 6332
Ldb3 14 34526603 to 34588682 62079 - protein coding gene LIM domain binding 3
Tssr128083 14 34541960 to 34541995 35 - TSS region transcription start site region 128083
Cpgi6333 14 34548589 to 34549706 1117 CpG island CpG island 6333
Tssr128084 14 34552210 to 34552222 12 - TSS region transcription start site region 128084
Tssr128085 14 34555466 to 34555493 27 - TSS region transcription start site region 128085
Tssr128086 14 34561737 to 34561751 14 - TSS region transcription start site region 128086
Cpgi6334 14 34565778 to 34565934 156 CpG island CpG island 6334
Tssr128087 14 34567529 to 34567550 21 - TSS region transcription start site region 128087
Cpgi6335 14 34569527 to 34569980 453 CpG island CpG island 6335
Tssr128088 14 34578629 to 34578641 12 - TSS region transcription start site region 128088
Tssr128089 14 34588626 to 34588637 11 - TSS region transcription start site region 128089
Tssr128090 14 34588654 to 34588669 15 - TSS region transcription start site region 128090
Tssr128091 14 34588681 to 34588690 9 - TSS region transcription start site region 128091
Tssr128092 14 34590284 to 34590297 13 - TSS region transcription start site region 128092
Opn4 14 34590618 to 34600142 9524 - protein coding gene opsin 4 (melanopsin)
Cpgi6336 14 34590959 to 34591204 245 CpG island CpG island 6336
Gm49012 14 34591092 to 34605700 14608 + antisense lncRNA gene predicted gene, 49012
Tssr128093 14 34600136 to 34600147 11 - TSS region transcription start site region 128093
Cpgi6337 14 34615097 to 34615312 215 CpG island CpG island 6337
Tssr128094 14 34620709 to 34620740 31 - TSS region transcription start site region 128094