Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:31182004-33222013

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296 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nisch 14 31170928 to 31206826 35898 - protein coding gene nischarin
Tssr127935 14 31182768 to 31182778 10 - TSS region transcription start site region 127935
Tssr127936 14 31182787 to 31182835 48 - TSS region transcription start site region 127936
Acigg10 14 31183419 to 66978401 35794982 QTL anti COL7 IgG2b antibody 10
Tssr127937 14 31184974 to 31185010 36 - TSS region transcription start site region 127937
Tssr4365 14 31187125 to 31187145 20 - TSS region transcription start site region 4365
Tssr127938 14 31188733 to 31188759 26 - TSS region transcription start site region 127938
Tssr127939 14 31188765 to 31188777 12 - TSS region transcription start site region 127939
Tssr127940 14 31188837 to 31188848 11 - TSS region transcription start site region 127940
Cpgi6285 14 31205841 to 31207198 1357 CpG island CpG island 6285
Tssr127941 14 31206666 to 31206709 43 - TSS region transcription start site region 127941
Tssr127942 14 31206782 to 31206815 33 - TSS region transcription start site region 127942
D14Mit13 14 31207816 to 31207956 140 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 13
Tssr124931 14 31208309 to 31208325 16 + TSS region transcription start site region 124931
Tnnc1 14 31208312 to 31211711 3399 + protein coding gene troponin C, cardiac/slow skeletal
Tssr124932 14 31209415 to 31209426 11 + TSS region transcription start site region 124932
Tssr124933 14 31209431 to 31209442 11 + TSS region transcription start site region 124933
Tssr124934 14 31209461 to 31209486 25 + TSS region transcription start site region 124934
Tssr124935 14 31210677 to 31210685 8 + TSS region transcription start site region 124935
Tssr4366 14 31210748 to 31210759 11 + TSS region transcription start site region 4366
Tssr124936 14 31217850 to 31217866 16 + TSS region transcription start site region 124936
Sema3g 14 31217873 to 31230352 12479 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
Phf7 14 31237689 to 31251317 13628 - protein coding gene PHD finger protein 7
Tssr127943 14 31240373 to 31240386 13 - TSS region transcription start site region 127943
Cpgi6286 14 31250652 to 31251974 1322 CpG island CpG island 6286
Tssr127944 14 31251019 to 31251020 1 - TSS region transcription start site region 127944
Tssr127945 14 31251194 to 31251348 154 - TSS region transcription start site region 127945
Bap1 14 31251454 to 31259930 8476 + protein coding gene Brca1 associated protein 1
Tssr124937 14 31251454 to 31251530 76 + TSS region transcription start site region 124937
Tssr124938 14 31255580 to 31255628 48 + TSS region transcription start site region 124938
Dnah1 14 31260375 to 31323896 63521 - protein coding gene dynein, axonemal, heavy chain 1
Gm35823 14 31267869 to 31320011 52142 + antisense lncRNA gene predicted gene, 35823
Tssr4367 14 31267909 to 31267923 14 + TSS region transcription start site region 4367
Cpgi6287 14 31269444 to 31269896 452 CpG island CpG island 6287
Tssr127946 14 31269498 to 31269560 62 - TSS region transcription start site region 127946
Cpgi6288 14 31310822 to 31311019 197 CpG island CpG island 6288
Cpgi6289 14 31323755 to 31324077 322 CpG island CpG island 6289
Tssr127947 14 31323884 to 31323929 45 - TSS region transcription start site region 127947
Tssr127948 14 31323930 to 31323950 20 - TSS region transcription start site region 127948
Gm49217 14 31323955 to 31336076 12121 + lincRNA gene predicted gene, 49217
Gm49791 14 31325519 to 31326006 487 - lincRNA gene predicted gene, 49791
Cpgi6290 14 31336347 to 31337276 929 CpG island CpG island 6290
Tssr124939 14 31336633 to 31336656 23 + TSS region transcription start site region 124939
Capn7 14 31336638 to 31371986 35348 + protein coding gene calpain 7
Tssr124940 14 31336658 to 31336719 61 + TSS region transcription start site region 124940
Tssr124941 14 31336795 to 31336806 11 + TSS region transcription start site region 124941
Tssr127949 14 31369843 to 31369889 46 - TSS region transcription start site region 127949
Sh3bp5 14 31373774 to 31436033 62259 - protein coding gene SH3-domain binding protein 5 (BTK-associated)
Tssr127950 14 31374256 to 31374274 18 - TSS region transcription start site region 127950
Tssr127951 14 31374303 to 31374340 37 - TSS region transcription start site region 127951
Tssr127952 14 31374594 to 31374607 13 - TSS region transcription start site region 127952
Tssr127953 14 31374738 to 31374761 23 - TSS region transcription start site region 127953
Tssr127954 14 31391753 to 31391771 18 - TSS region transcription start site region 127954
Tssr127955 14 31398062 to 31398091 29 - TSS region transcription start site region 127955
Tssr127956 14 31398101 to 31398112 11 - TSS region transcription start site region 127956
Tssr127957 14 31401006 to 31401012 6 - TSS region transcription start site region 127957
Tssr127958 14 31402054 to 31402064 10 - TSS region transcription start site region 127958
Tssr127959 14 31417666 to 31417678 12 - TSS region transcription start site region 127959
Tssr127960 14 31434275 to 31434286 11 - TSS region transcription start site region 127960
Tssr127961 14 31434319 to 31434326 7 - TSS region transcription start site region 127961
Cpgi6291 14 31435116 to 31436430 1314 CpG island CpG island 6291
Gm35907 14 31435201 to 31463624 28423 + lncRNA gene predicted gene, 35907
Tssr124942 14 31435221 to 31435249 28 + TSS region transcription start site region 124942
Tssr127962 14 31436028 to 31436109 81 - TSS region transcription start site region 127962
Tssr127963 14 31436193 to 31436204 11 - TSS region transcription start site region 127963
Gm49252 14 31458828 to 31459225 397 - pseudogene predicted gene, 49252
D14Jor2 14 31459729 to 31460145 416 DNA segment DNA segment, Chr 14, Barbara Jordan 2
Tssr127964 14 31472572 to 31472575 3 - TSS region transcription start site region 127964
Mettl6 14 31473578 to 31495040 21462 - protein coding gene methyltransferase like 6
Tssr127965 14 31494257 to 31494265 8 - TSS region transcription start site region 127965
Tssr124943 14 31494348 to 31494367 19 + TSS region transcription start site region 124943
Cpgi6292 14 31494423 to 31495758 1335 CpG island CpG island 6292
Tssr127966 14 31494960 to 31494985 25 - TSS region transcription start site region 127966
Tssr127967 14 31494992 to 31495054 62 - TSS region transcription start site region 127967
Tssr124944 14 31495065 to 31495095 30 + TSS region transcription start site region 124944
Eaf1 14 31495079 to 31509858 14779 + protein coding gene ELL associated factor 1
Tssr124945 14 31495097 to 31495181 84 + TSS region transcription start site region 124945
Tssr124946 14 31496417 to 31496423 6 + TSS region transcription start site region 124946
Tssr124947 14 31500123 to 31500125 2 + TSS region transcription start site region 124947
Tssr124948 14 31506514 to 31506516 2 + TSS region transcription start site region 124948
Gm49270 14 31511348 to 31512151 803 + unclassified gene predicted gene, 49270
Colq 14 31523082 to 31591343 68261 - protein coding gene collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
Tssr127968 14 31529626 to 31529636 10 - TSS region transcription start site region 127968
Gm24057 14 31536957 to 31537258 301 - unclassified non-coding RNA gene predicted gene, 24057
D14Mit180 14 31541777 to 31541898 121 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 180
Tssr127969 14 31545783 to 31545791 8 - TSS region transcription start site region 127969
Tssr127970 14 31545818 to 31545827 9 - TSS region transcription start site region 127970
Tssr127971 14 31546034 to 31546037 3 - TSS region transcription start site region 127971
Gm49387 14 31552905 to 31640878 87973 - protein coding gene predicted gene, 49387
Tssr127972 14 31553233 to 31553240 7 - TSS region transcription start site region 127972
Tssr127973 14 31553780 to 31553828 48 - TSS region transcription start site region 127973
Tssr127974 14 31557882 to 31557894 12 - TSS region transcription start site region 127974
Tssr124949 14 31575493 to 31575502 9 + TSS region transcription start site region 124949
Tssr124950 14 31575522 to 31575532 10 + TSS region transcription start site region 124950
Tssr127975 14 31577283 to 31577294 11 - TSS region transcription start site region 127975
Tssr127976 14 31577318 to 31577334 16 - TSS region transcription start site region 127976
Tssr127977 14 31591316 to 31591362 46 - TSS region transcription start site region 127977
Hacl1 14 31607226 to 31640965 33739 - protein coding gene 2-hydroxyacyl-CoA lyase 1
Tssr124951 14 31619003 to 31619011 8 + TSS region transcription start site region 124951
Tssr127978 14 31619034 to 31619043 9 - TSS region transcription start site region 127978
Tssr127979 14 31633687 to 31633699 12 - TSS region transcription start site region 127979
Tssr127980 14 31637738 to 31637744 6 - TSS region transcription start site region 127980
Cpgi6293 14 31640415 to 31641427 1012 CpG island CpG island 6293
Tssr127981 14 31640547 to 31640575 28 - TSS region transcription start site region 127981
Tssr127982 14 31640891 to 31640980 89 - TSS region transcription start site region 127982
Tssr124952 14 31641018 to 31641029 11 + TSS region transcription start site region 124952
Btd 14 31641028 to 31668197 27169 + protein coding gene biotinidase
Tssr124953 14 31641051 to 31641082 31 + TSS region transcription start site region 124953
Tssr127983 14 31641205 to 31641272 67 - TSS region transcription start site region 127983
twit 14 31646980 to 33256349 1609369 heritable phenotypic marker twitter
D14Mit174 14 31646980 to 31647125 145 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 174
Tssr127984 14 31653273 to 31653279 6 - TSS region transcription start site region 127984
Cpgi6294 14 31661553 to 31662287 734 CpG island CpG island 6294
Tssr124954 14 31665812 to 31665823 11 + TSS region transcription start site region 124954
Tssr124955 14 31671864 to 31671894 30 + TSS region transcription start site region 124955
Cpgi6295 14 31685622 to 31685865 243 CpG island CpG island 6295
Ankrd28 14 31698768 to 31830415 131647 - protein coding gene ankyrin repeat domain 28
Tssr127985 14 31729014 to 31729017 3 - TSS region transcription start site region 127985
Tssr127986 14 31742827 to 31742838 11 - TSS region transcription start site region 127986
Gm49308 14 31750803 to 31754414 3611 - unclassified gene predicted gene, 49308
Tssr127987 14 31780928 to 31780963 35 - TSS region transcription start site region 127987
Tssr127988 14 31780972 to 31780987 15 - TSS region transcription start site region 127988
Tssr127989 14 31780998 to 31781014 16 - TSS region transcription start site region 127989
Tssr127990 14 31781401 to 31781412 11 - TSS region transcription start site region 127990
Tssr127991 14 31781423 to 31781440 17 - TSS region transcription start site region 127991
Tssr127992 14 31781448 to 31781471 23 - TSS region transcription start site region 127992
Tssr127993 14 31781488 to 31781501 13 - TSS region transcription start site region 127993
Tssr127994 14 31781587 to 31781596 9 - TSS region transcription start site region 127994
Tssr127995 14 31781617 to 31781632 15 - TSS region transcription start site region 127995
Tssr127996 14 31781633 to 31781661 28 - TSS region transcription start site region 127996
Tssr127997 14 31781662 to 31781731 69 - TSS region transcription start site region 127997
Tssr127998 14 31781913 to 31781935 22 - TSS region transcription start site region 127998
Tssr127999 14 31781996 to 31782023 27 - TSS region transcription start site region 127999
Gm49309 14 31801559 to 31803411 1852 + pseudogene predicted gene, 49309
Cpgi6296 14 31829616 to 31831235 1619 CpG island CpG island 6296
Tssr128000 14 31830402 to 31830440 38 - TSS region transcription start site region 128000
Tssr128001 14 31830653 to 31830733 80 - TSS region transcription start site region 128001
Gm22876 14 31836884 to 31837181 297 - unclassified non-coding RNA gene predicted gene, 22876
Gm36164 14 31912995 to 31914595 1600 + lncRNA gene predicted gene, 36164
D830044D21Rik 14 31929500 to 31943101 13601 + lincRNA gene RIKEN cDNA D830044D21 gene
Tssr124956 14 31929583 to 31929594 11 + TSS region transcription start site region 124956
Tssr124957 14 31929617 to 31929640 23 + TSS region transcription start site region 124957
Gm41125 14 31943562 to 31946428 2866 + lncRNA gene predicted gene, 41125
4930425P05Rik 14 32012141 to 32013002 861 - lincRNA gene RIKEN cDNA 4930425P05 gene
Gm26045 14 32023344 to 32023440 96 + unclassified non-coding RNA gene predicted gene, 26045
Galnt15 14 32028989 to 32062197 33208 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 15
Tssr124958 14 32029013 to 32029044 31 + TSS region transcription start site region 124958
Tssr4368 14 32029220 to 32029237 17 + TSS region transcription start site region 4368
Cpgi6297 14 32029377 to 32029575 198 CpG island CpG island 6297
Tssr124959 14 32029604 to 32029657 53 + TSS region transcription start site region 124959
Gm49084 14 32035915 to 32036338 423 - pseudogene predicted gene, 49084
Dph3 14 32080566 to 32085729 5163 - protein coding gene diphthamine biosynthesis 3
Cpgi6298 14 32085233 to 32086039 806 CpG island CpG island 6298
Tssr128002 14 32085278 to 32085328 50 - TSS region transcription start site region 128002
Tssr4369 14 32085546 to 32085558 12 - TSS region transcription start site region 4369
Tssr128003 14 32085562 to 32085590 28 - TSS region transcription start site region 128003
Tssr128004 14 32085595 to 32085639 44 - TSS region transcription start site region 128004
Oxnad1 14 32085628 to 32103203 17575 + protein coding gene oxidoreductase NAD-binding domain containing 1
Tssr124960 14 32085677 to 32085695 18 + TSS region transcription start site region 124960
Tssr124961 14 32085725 to 32085747 22 + TSS region transcription start site region 124961
Tssr124962 14 32085753 to 32085800 47 + TSS region transcription start site region 124962
Tssr124963 14 32085804 to 32085865 61 + TSS region transcription start site region 124963
Tssr124964 14 32099378 to 32099399 21 + TSS region transcription start site region 124964
Tssr128005 14 32124403 to 32124410 7 - TSS region transcription start site region 128005
Gm41127 14 32140431 to 32144811 4380 - lncRNA gene predicted gene, 41127
Tssr124965 14 32142021 to 32142025 4 + TSS region transcription start site region 124965
Msmb 14 32142023 to 32158327 16304 + protein coding gene beta-microseminoprotein
Tssr128006 14 32145708 to 32145725 17 - TSS region transcription start site region 128006
Tssr128007 14 32146191 to 32146203 12 - TSS region transcription start site region 128007
Gm18909 14 32154744 to 32155919 1175 - pseudogene predicted gene, 18909
Tssr124966 14 32159332 to 32159353 21 + TSS region transcription start site region 124966
Cpgi6299 14 32159755 to 32160471 716 CpG island CpG island 6299
Ncoa4 14 32159887 to 32179855 19968 + protein coding gene nuclear receptor coactivator 4
Tssr124967 14 32159901 to 32159989 88 + TSS region transcription start site region 124967
Tssr128008 14 32160068 to 32160070 2 - TSS region transcription start site region 128008
Cpgi6300 14 32165518 to 32165946 428 CpG island CpG island 6300
Tssr124968 14 32165528 to 32165541 13 + TSS region transcription start site region 124968
Tssr124969 14 32165573 to 32165599 26 + TSS region transcription start site region 124969
Tssr124970 14 32165758 to 32165767 9 + TSS region transcription start site region 124970
Tssr124971 14 32165784 to 32165798 14 + TSS region transcription start site region 124971
Tssr124972 14 32165819 to 32165831 12 + TSS region transcription start site region 124972
Tssr124973 14 32165840 to 32165856 16 + TSS region transcription start site region 124973
Tssr124974 14 32165874 to 32165905 31 + TSS region transcription start site region 124974
Tssr124975 14 32166104 to 32166123 19 + TSS region transcription start site region 124975
Tssr124976 14 32175652 to 32175654 2 + TSS region transcription start site region 124976
Timm23 14 32180166 to 32201891 21725 - protein coding gene translocase of inner mitochondrial membrane 23
Gm23946 14 32191854 to 32192050 196 - snoRNA gene predicted gene, 23946
D14Mit254 14 32194628 to 32194746 118 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 254
Cpgi6301 14 32201378 to 32202608 1230 CpG island CpG island 6301
Tssr128009 14 32201887 to 32201908 21 - TSS region transcription start site region 128009
Tssr124977 14 32201937 to 32201995 58 + TSS region transcription start site region 124977
Parg 14 32201949 to 32297550 95601 + protein coding gene poly (ADP-ribose) glycohydrolase
Tssr124978 14 32202004 to 32202013 9 + TSS region transcription start site region 124978
Tssr128010 14 32202308 to 32202322 14 - TSS region transcription start site region 128010
Gm49196 14 32230846 to 32231443 597 + pseudogene predicted gene, 49196
Gm7707 14 32266593 to 32267748 1155 - pseudogene predicted gene 7707
Gm17210 14 32292924 to 32294974 2050 - antisense lncRNA gene predicted gene 17210
Gm48914 14 32303662 to 32317985 14323 - lincRNA gene predicted gene, 48914
Gm46447 14 32304301 to 32310486 6185 + lincRNA gene predicted gene, 46447
Tssr128011 14 32317969 to 32317989 20 - TSS region transcription start site region 128011