Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:28481379-31631384

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480 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Appd2 14 16523711 to 30392905 13869194 QTL APP associated premature death 2
Mcsq2 14 21810000 to 28728000 6918000 QTL methacholine sensitivity QTL 2, baseline
Tssr124778 14 28504565 to 28504605 40 + TSS region transcription start site region 124778
Tssr124779 14 28504634 to 28504656 22 + TSS region transcription start site region 124779
Cpgi6258 14 28504656 to 28506883 2227 CpG island CpG island 6258
Tssr124780 14 28504678 to 28504689 11 + TSS region transcription start site region 124780
Tssr124781 14 28504736 to 28504762 26 + TSS region transcription start site region 124781
Tssr124782 14 28504796 to 28504826 30 + TSS region transcription start site region 124782
Tssr124783 14 28505463 to 28505491 28 + TSS region transcription start site region 124783
Wnt5a 14 28505473 to 28527448 21975 + protein coding gene wingless-type MMTV integration site family, member 5A
Tssr124784 14 28505495 to 28505509 14 + TSS region transcription start site region 124784
Tssr124785 14 28505542 to 28505569 27 + TSS region transcription start site region 124785
Tssr124786 14 28505606 to 28505617 11 + TSS region transcription start site region 124786
Tssr124787 14 28505759 to 28505772 13 + TSS region transcription start site region 124787
Tssr124788 14 28505781 to 28505797 16 + TSS region transcription start site region 124788
Tssr124789 14 28505817 to 28505835 18 + TSS region transcription start site region 124789
Cpgi6259 14 28507592 to 28507811 219 CpG island CpG island 6259
Gm2670 14 28508074 to 28511392 3318 - antisense lncRNA gene predicted gene 2670
Cpgi6260 14 28509070 to 28509850 780 CpG island CpG island 6260
Tssr124790 14 28509790 to 28509820 30 + TSS region transcription start site region 124790
Tssr124791 14 28510098 to 28510119 21 + TSS region transcription start site region 124791
Cpgi6261 14 28510463 to 28510834 371 CpG island CpG island 6261
Cpgi6262 14 28511313 to 28511639 326 CpG island CpG island 6262
Tssr124792 14 28511344 to 28511381 37 + TSS region transcription start site region 124792
Cpgi6263 14 28518127 to 28518616 489 CpG island CpG island 6263
Cpgi6264 14 28522454 to 28522931 477 CpG island CpG island 6264
Tssr124793 14 28526179 to 28526195 16 + TSS region transcription start site region 124793
Gm35164 14 28649662 to 28698049 48387 + lincRNA gene predicted gene, 35164
Tssr124794 14 28649697 to 28649717 20 + TSS region transcription start site region 124794
Tssr127816 14 28674814 to 28674819 5 - TSS region transcription start site region 127816
Gm18079 14 28724375 to 28725259 884 + pseudogene predicted gene, 18079
Gm35217 14 28777427 to 28798421 20994 - lincRNA gene predicted gene, 35217
Cacna2d3 14 28904943 to 29721864 816921 - protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 3
Tssr127817 14 28909052 to 28909056 4 - TSS region transcription start site region 127817
Tssr127818 14 28969374 to 28969381 7 - TSS region transcription start site region 127818
Tssr127819 14 28969466 to 28969476 10 - TSS region transcription start site region 127819
Gm23999 14 29009696 to 29009799 103 - rRNA gene predicted gene, 23999
Tssr124795 14 29018077 to 29018082 5 + TSS region transcription start site region 124795
Tssr124796 14 29018107 to 29018119 12 + TSS region transcription start site region 124796
Tssr124797 14 29018205 to 29018226 21 + TSS region transcription start site region 124797
Lrtm1 14 29018208 to 29033642 15434 + protein coding gene leucine-rich repeats and transmembrane domains 1
Tssr124798 14 29018236 to 29018243 7 + TSS region transcription start site region 124798
Tssr124799 14 29018245 to 29018278 33 + TSS region transcription start site region 124799
Tssr127820 14 29018317 to 29018321 4 - TSS region transcription start site region 127820
Tssr124800 14 29021403 to 29021413 10 + TSS region transcription start site region 124800
Tssr124801 14 29021434 to 29021444 10 + TSS region transcription start site region 124801
Gm48004 14 29081302 to 29083805 2503 + antisense lncRNA gene predicted gene, 48004
Gm6043 14 29217639 to 29218130 491 + pseudogene predicted gene 6043
Gm48006 14 29235227 to 29257521 22294 + antisense lncRNA gene predicted gene, 48006
Gm48005 14 29270287 to 29270467 180 + pseudogene predicted gene, 48005
Tssr4357 14 29309993 to 29309999 6 + TSS region transcription start site region 4357
D14Mit186 14 29429696 to 29429830 134 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 186
Tssr127821 14 29432274 to 29432276 2 - TSS region transcription start site region 127821
D14Mit173 14 29461839 to 29461988 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 173
D14Mit173.1 14 29461966 to 29462132 166 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 173.1
Tssr4358 14 29479435 to 29479437 2 + TSS region transcription start site region 4358
Tssr124802 14 29486595 to 29486597 2 + TSS region transcription start site region 124802
Dyscalc4 14 29490914 to 29491050 136 QTL dystrophic cardiac calcinosis 4
D14Mit133 14 29490914 to 29491050 136 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 133
Tssr127822 14 29501039 to 29501041 2 - TSS region transcription start site region 127822
Tssr127823 14 29529651 to 29529652 1 - TSS region transcription start site region 127823
Gm48003 14 29574697 to 29593304 18607 + antisense lncRNA gene predicted gene, 48003
D14Mit14 14 29668256 to 29668520 264 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 14
Tssr4359 14 29669434 to 29669436 2 + TSS region transcription start site region 4359
Cpgi6265 14 29721340 to 29723204 1864 CpG island CpG island 6265
Tssr127824 14 29721783 to 29721801 18 - TSS region transcription start site region 127824
Tssr127825 14 29721835 to 29721886 51 - TSS region transcription start site region 127825
Tssr127826 14 29721890 to 29721912 22 - TSS region transcription start site region 127826
Tssr127827 14 29722579 to 29722598 19 - TSS region transcription start site region 127827
Gm48058 14 29732366 to 29733395 1029 - lincRNA gene predicted gene, 48058
Gm41118 14 29735344 to 29745625 10281 + lincRNA gene predicted gene, 41118
Gm35281 14 29786837 to 29796975 10138 - lincRNA gene predicted gene, 35281
1700052M09Rik 14 29840856 to 29841730 874 unclassified gene RIKEN cDNA 1700052M09 gene
Tssr127828 14 29852347 to 29852370 23 - TSS region transcription start site region 127828
Gm7633 14 29902950 to 29904390 1440 + pseudogene predicted gene 7633
Gm47414 14 29958071 to 29961381 3310 - lincRNA gene predicted gene, 47414
Cpgi6266 14 29968047 to 29968899 852 CpG island CpG island 6266
Tssr127829 14 29968158 to 29968240 82 - TSS region transcription start site region 127829
Tssr124803 14 29968317 to 29968334 17 + TSS region transcription start site region 124803
Tssr124804 14 29968350 to 29968361 11 + TSS region transcription start site region 124804
Tssr124805 14 29968369 to 29968462 93 + TSS region transcription start site region 124805
Selenok 14 29968380 to 29975074 6694 + protein coding gene selenoprotein K
Cpgi6267 14 29978286 to 29978785 499 CpG island CpG island 6267
Actr8 14 29978331 to 29993221 14890 + protein coding gene ARP8 actin-related protein 8
Tssr124806 14 29978346 to 29978357 11 + TSS region transcription start site region 124806
Tssr124807 14 29978373 to 29978418 45 + TSS region transcription start site region 124807
Tssr124808 14 29978423 to 29978434 11 + TSS region transcription start site region 124808
Mir6947 14 29988888 to 29988952 64 + miRNA gene microRNA 6947
Il17rb 14 29996168 to 30008896 12728 - protein coding gene interleukin 17 receptor B
Cpgi6268 14 30008633 to 30009284 651 CpG island CpG island 6268
Tssr127830 14 30008780 to 30008796 16 - TSS region transcription start site region 127830
Tssr127831 14 30008817 to 30008835 18 - TSS region transcription start site region 127831
Tssr127832 14 30008836 to 30008846 10 - TSS region transcription start site region 127832
Tssr127833 14 30008867 to 30008885 18 - TSS region transcription start site region 127833
Tssr124809 14 30008893 to 30008901 8 + TSS region transcription start site region 124809
Tssr124810 14 30008929 to 30008944 15 + TSS region transcription start site region 124810
Tssr124811 14 30008950 to 30008961 11 + TSS region transcription start site region 124811
Tssr127834 14 30008978 to 30008999 21 - TSS region transcription start site region 127834
Chdh 14 30009000 to 30040466 31466 + protein coding gene choline dehydrogenase
Tssr124812 14 30009018 to 30009030 12 + TSS region transcription start site region 124812
Tssr124813 14 30009036 to 30009057 21 + TSS region transcription start site region 124813
Tssr124814 14 30009076 to 30009092 16 + TSS region transcription start site region 124814
Tssr124815 14 30009095 to 30009110 15 + TSS region transcription start site region 124815
Tssr124816 14 30009115 to 30009146 31 + TSS region transcription start site region 124816
Tssr124817 14 30009162 to 30009174 12 + TSS region transcription start site region 124817
Tssr127835 14 30009283 to 30009293 10 - TSS region transcription start site region 127835
Tssr127836 14 30009301 to 30009340 39 - TSS region transcription start site region 127836
Tssr127837 14 30009358 to 30009367 9 - TSS region transcription start site region 127837
Tssr124818 14 30010085 to 30010099 14 + TSS region transcription start site region 124818
Tssr124819 14 30010323 to 30010343 20 + TSS region transcription start site region 124819
Tssr124820 14 30015477 to 30015496 19 + TSS region transcription start site region 124820
Gm35449 14 30017415 to 30021248 3833 - lncRNA gene predicted gene, 35449
Tssr127838 14 30019908 to 30019914 6 - TSS region transcription start site region 127838
Tssr124821 14 30022750 to 30022776 26 + TSS region transcription start site region 124821
Tssr127839 14 30024589 to 30024616 27 - TSS region transcription start site region 127839
Tssr124822 14 30024947 to 30024954 7 + TSS region transcription start site region 124822
Tssr124823 14 30025663 to 30025676 13 + TSS region transcription start site region 124823
Gm18760 14 30027687 to 30028351 664 - pseudogene predicted gene, 18760
Cacna1d 14 30039941 to 30491156 451215 - protein coding gene calcium channel, voltage-dependent, L type, alpha 1D subunit
Tssr127840 14 30056325 to 30056339 14 - TSS region transcription start site region 127840
Tssr127841 14 30056350 to 30056359 9 - TSS region transcription start site region 127841
Tssr127842 14 30056379 to 30056384 5 - TSS region transcription start site region 127842
Tssr127843 14 30094880 to 30094884 4 - TSS region transcription start site region 127843
Tssr127844 14 30125091 to 30125140 49 - TSS region transcription start site region 127844
Tssr124824 14 30131549 to 30131557 8 + TSS region transcription start site region 124824
Tssr4360 14 30148352 to 30148356 4 - TSS region transcription start site region 4360
Tssr127845 14 30160782 to 30160788 6 - TSS region transcription start site region 127845
Tssr127846 14 30177415 to 30177420 5 - TSS region transcription start site region 127846
Tssr127847 14 30206127 to 30206131 4 - TSS region transcription start site region 127847
Gm47570 14 30207738 to 30208219 481 + pseudogene predicted gene, 47570
Tssr127848 14 30217005 to 30217009 4 - TSS region transcription start site region 127848
Tssr127849 14 30278027 to 30278030 3 - TSS region transcription start site region 127849
Tssr127850 14 30297299 to 30297306 7 - TSS region transcription start site region 127850
Tssr127851 14 30330179 to 30330226 47 - TSS region transcription start site region 127851
Tssr127852 14 30345802 to 30345805 3 - TSS region transcription start site region 127852
Cpgi6269 14 30352212 to 30352468 256 CpG island CpG island 6269
Cpgi6270 14 30352778 to 30354247 1469 CpG island CpG island 6270
Tssr127853 14 30353468 to 30353535 67 - TSS region transcription start site region 127853
Tssr127854 14 30353574 to 30353603 29 - TSS region transcription start site region 127854
Tssr127855 14 30363896 to 30363897 1 - TSS region transcription start site region 127855
Tssr127856 14 30378412 to 30378417 5 - TSS region transcription start site region 127856
Gm18072 14 30383806 to 30384354 548 - pseudogene predicted gene, 18072
D14Mit127 14 30392757 to 30392905 148 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 127
Gm47576 14 30397994 to 30398443 449 + pseudogene predicted gene, 47576
Gm7621 14 30402002 to 30402988 986 + pseudogene predicted gene 7621
Cpgi6271 14 30416879 to 30417083 204 CpG island CpG island 6271
Gm18681 14 30423265 to 30423873 608 + pseudogene predicted gene, 18681
Tssr127857 14 30434098 to 30434115 17 - TSS region transcription start site region 127857
4831407H17Rik 14 30458036 to 30463282 5246 + lncRNA gene RIKEN cDNA 4831407H17 gene
Tssr127858 14 30469872 to 30469883 11 - TSS region transcription start site region 127858
Tssr127859 14 30469886 to 30469895 9 - TSS region transcription start site region 127859
Tssr127860 14 30469899 to 30469911 12 - TSS region transcription start site region 127860
Cpgi6272 14 30479255 to 30480115 860 CpG island CpG island 6272
Dcp1a 14 30479535 to 30527063 47528 + protein coding gene decapping mRNA 1A
Tssr124825 14 30479620 to 30479685 65 + TSS region transcription start site region 124825
Gm35566 14 30484594 to 30488591 3997 + lncRNA gene predicted gene, 35566
Tssr124826 14 30485071 to 30485087 16 + TSS region transcription start site region 124826
Tssr4361 14 30485098 to 30485107 9 + TSS region transcription start site region 4361
Tssr127861 14 30491451 to 30491458 7 - TSS region transcription start site region 127861
Tssr127862 14 30491488 to 30491506 18 - TSS region transcription start site region 127862
Cpgi6273 14 30548980 to 30550090 1110 CpG island CpG island 6273
Tkt 14 30549131 to 30574724 25593 + protein coding gene transketolase
Tssr124827 14 30549139 to 30549159 20 + TSS region transcription start site region 124827
Tssr124828 14 30549163 to 30549188 25 + TSS region transcription start site region 124828
Tssr124829 14 30558711 to 30558728 17 + TSS region transcription start site region 124829
Tssr124830 14 30558787 to 30558805 18 + TSS region transcription start site region 124830
Tssr124831 14 30559780 to 30559799 19 + TSS region transcription start site region 124831
Tssr124832 14 30565509 to 30565561 52 + TSS region transcription start site region 124832
Tssr124833 14 30565606 to 30565635 29 + TSS region transcription start site region 124833
Tssr124834 14 30568176 to 30568209 33 + TSS region transcription start site region 124834
Tssr124835 14 30570958 to 30570975 17 + TSS region transcription start site region 124835
Mir3076 14 30572149 to 30572208 59 + miRNA gene microRNA 3076
Tssr127863 14 30573609 to 30573611 2 - TSS region transcription start site region 127863
Tssr124836 14 30593435 to 30593446 11 + TSS region transcription start site region 124836
Prkcd 14 30595354 to 30626210 30856 - protein coding gene protein kinase C, delta
Tssr127864 14 30595709 to 30595727 18 - TSS region transcription start site region 127864
Tssr127865 14 30595748 to 30595782 34 - TSS region transcription start site region 127865
Tssr124837 14 30595986 to 30596002 16 + TSS region transcription start site region 124837
Tssr127866 14 30596542 to 30596546 4 - TSS region transcription start site region 127866
Tssr124838 14 30596641 to 30596659 18 + TSS region transcription start site region 124838
Tssr127867 14 30599364 to 30599383 19 - TSS region transcription start site region 127867
Tssr127868 14 30599417 to 30599432 15 - TSS region transcription start site region 127868
Tssr127869 14 30599486 to 30599500 14 - TSS region transcription start site region 127869
Tssr127870 14 30604936 to 30604983 47 - TSS region transcription start site region 127870
Tssr127871 14 30605166 to 30605175 9 - TSS region transcription start site region 127871
Tssr4362 14 30605841 to 30605909 68 - TSS region transcription start site region 4362
Tssr127872 14 30606697 to 30606713 16 - TSS region transcription start site region 127872
Tssr4363 14 30607769 to 30607774 5 - TSS region transcription start site region 4363
Tssr127873 14 30607779 to 30607804 25 - TSS region transcription start site region 127873
Tssr127874 14 30607808 to 30607821 13 - TSS region transcription start site region 127874
Tssr127875 14 30607823 to 30607824 1 - TSS region transcription start site region 127875
Tssr124839 14 30607911 to 30607923 12 + TSS region transcription start site region 124839
Tssr127876 14 30609145 to 30609177 32 - TSS region transcription start site region 127876
Tssr127877 14 30616851 to 30616861 10 - TSS region transcription start site region 127877
Tssr127878 14 30618133 to 30618135 2 - TSS region transcription start site region 127878
Tssr127879 14 30622161 to 30622168 7 - TSS region transcription start site region 127879
Tssr127880 14 30625033 to 30625062 29 - TSS region transcription start site region 127880
Tssr127881 14 30625095 to 30625105 10 - TSS region transcription start site region 127881
Tssr127882 14 30625126 to 30625137 11 - TSS region transcription start site region 127882
Tssr127883 14 30625143 to 30625158 15 - TSS region transcription start site region 127883