Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:25859255-27019269

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Anxa11 14 25842156 to 25886804 44648 + protein coding gene annexin A11
Anxa11os 14 25856777 to 25870266 13489 - antisense lncRNA gene annexin A11, opposite strand
Tssr127777 14 25861872 to 25861890 18 - TSS region transcription start site region 127777
Tssr124670 14 25862069 to 25862074 5 + TSS region transcription start site region 124670
Tssr124671 14 25868784 to 25868809 25 + TSS region transcription start site region 124671
Tssr124672 14 25868827 to 25868856 29 + TSS region transcription start site region 124672
Tssr124673 14 25869610 to 25869621 11 + TSS region transcription start site region 124673
Tssr124674 14 25869622 to 25869629 7 + TSS region transcription start site region 124674
Tssr124675 14 25869635 to 25869636 1 + TSS region transcription start site region 124675
Tssr4346 14 25869642 to 25869647 5 + TSS region transcription start site region 4346
Tssr124676 14 25872857 to 25872870 13 + TSS region transcription start site region 124676
Plac9a 14 25888403 to 25902893 14490 - protein coding gene placenta specific 9a
Tmem254a 14 25923300 to 25927672 4372 - protein coding gene transmembrane protein 254a
Gm19013 14 25939359 to 25940580 1221 - pseudogene predicted gene, 19013
Cphx1 14 25941559 to 25956374 14815 + protein coding gene cytoplasmic polyadenylated homeobox 1
Duxbl1 14 25978577 to 25990088 11511 + protein coding gene double homeobox B-like 1
Gm2260 14 26016431 to 26025837 9406 + pseudogene predicted gene 2260
Gm9780 14 26027782 to 26042963 15181 - protein coding gene predicted gene 9780
Tmem254c 14 26063919 to 26067355 3436 - protein coding gene transmembrane protein 254c
Gm19014 14 26079108 to 26080296 1188 - pseudogene predicted gene, 19014
Cphx2 14 26081516 to 26096127 14611 + protein coding gene cytoplasmic polyadenylated homeobox 2
Duxbl2 14 26118349 to 26129763 11414 + protein coding gene double homeobox B-like 2
Gm2274 14 26156036 to 26163648 7612 + pseudogene predicted gene 2274
Plac9b 14 26167316 to 26182351 15035 - protein coding gene placenta specific 9b
Tmem254b 14 26203366 to 26207025 3659 - protein coding gene transmembrane protein 254b
Gm19015 14 26218722 to 26219910 1188 - pseudogene predicted gene, 19015
Cphx3 14 26220923 to 26235744 14821 + protein coding gene cytoplasmic polyadenylated homeobox 3
Duxbl3 14 26257962 to 26269436 11474 + protein coding gene double homeobox B-like 3
Gm18578 14 26302794 to 26304924 2130 + pseudogene predicted gene, 18578
Gm46445 14 26312495 to 26337327 24832 + lncRNA gene predicted gene, 46445
Gm34059 14 26315188 to 26324676 9488 - lincRNA gene predicted gene, 34059
Tssr124677 14 26331068 to 26331072 4 + TSS region transcription start site region 124677
Tssr124678 14 26357507 to 26357529 22 + TSS region transcription start site region 124678
Tssr124679 14 26357533 to 26357551 18 + TSS region transcription start site region 124679
4933413J09Rik 14 26357547 to 26400456 42909 + lincRNA gene RIKEN cDNA 4933413J09 gene
Crb1-ps 14 26375278 to 26376172 894 - pseudogene crumbs family member 1, photoreceptor morphogenesis associated, pseudogene
Slmapos2 14 26389199 to 26395521 6322 + lincRNA gene sarcolemma associated protein, opposite strand transcript 2
Gm34223 14 26398256 to 26404157 5901 - lncRNA gene predicted gene, 34223
C130057D09Rik 14 26407972 to 26409080 1108 unclassified gene RIKEN cDNA C130057D09 gene
Slmap 14 26413168 to 26534931 121763 - protein coding gene sarcolemma associated protein
Tssr127778 14 26414628 to 26414667 39 - TSS region transcription start site region 127778
Tssr127779 14 26439215 to 26439236 21 - TSS region transcription start site region 127779
Tssr127780 14 26439255 to 26439269 14 - TSS region transcription start site region 127780
Tssr127781 14 26442622 to 26442691 69 - TSS region transcription start site region 127781
Tssr127782 14 26442692 to 26442701 9 - TSS region transcription start site region 127782
Tssr127783 14 26442723 to 26442734 11 - TSS region transcription start site region 127783
Tssr4347 14 26442760 to 26442764 4 - TSS region transcription start site region 4347
Tssr127784 14 26442843 to 26442852 9 - TSS region transcription start site region 127784
Tssr127785 14 26442874 to 26442877 3 - TSS region transcription start site region 127785
Tssr127786 14 26463612 to 26463629 17 - TSS region transcription start site region 127786
Gm24031 14 26497655 to 26497785 130 + snoRNA gene predicted gene, 24031
D14Ertd574e 14 26508234 to 26508481 247 DNA segment DNA segment, Chr 14, ERATO Doi 574, expressed
Gm2178 14 26514554 to 26514910 356 + pseudogene predicted gene 2178
Tssr127787 14 26515942 to 26515961 19 - TSS region transcription start site region 127787
Tssr127788 14 26523030 to 26523031 1 - TSS region transcription start site region 127788
Cpgi6246 14 26533294 to 26535140 1846 CpG island CpG island 6246
Tssr127789 14 26534870 to 26534929 59 - TSS region transcription start site region 127789
D14Mit51 14 26559415 to 26559616 201 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 51
Gm18215 14 26562305 to 26562953 648 - pseudogene predicted gene, 18215
Tssr124680 14 26565737 to 26565755 18 + TSS region transcription start site region 124680
Gm7565 14 26565766 to 26566388 622 + pseudogene predicted gene 7565
Dennd6a 14 26573858 to 26634322 60464 + protein coding gene DENN/MADD domain containing 6A
Cpgi6247 14 26579312 to 26580197 885 CpG island CpG island 6247
Tssr124681 14 26579535 to 26579612 77 + TSS region transcription start site region 124681
Tssr124682 14 26590138 to 26590152 14 + TSS region transcription start site region 124682
Tssr124683 14 26590542 to 26590599 57 + TSS region transcription start site region 124683
Tssr127790 14 26591567 to 26591574 7 - TSS region transcription start site region 127790
Tssr127791 14 26591622 to 26591634 12 - TSS region transcription start site region 127791
Tssr127792 14 26591639 to 26591650 11 - TSS region transcription start site region 127792
Tssr127793 14 26591668 to 26591677 9 - TSS region transcription start site region 127793
Tssr124684 14 26608541 to 26608577 36 + TSS region transcription start site region 124684
Tssr124685 14 26626869 to 26626896 27 + TSS region transcription start site region 124685
Arf4os 14 26628407 to 26638183 9776 - antisense lncRNA gene ADP-ribosylation factor 4, opposite strand
Tssr124686 14 26630940 to 26630962 22 + TSS region transcription start site region 124686
Tssr124687 14 26634746 to 26634750 4 + TSS region transcription start site region 124687
Cpgi6248 14 26637750 to 26638956 1206 CpG island CpG island 6248
Tssr124688 14 26638012 to 26638024 12 + TSS region transcription start site region 124688
Tssr124689 14 26638036 to 26638047 11 + TSS region transcription start site region 124689
Tssr124690 14 26638120 to 26638151 31 + TSS region transcription start site region 124690
Tssr124691 14 26638157 to 26638224 67 + TSS region transcription start site region 124691
Arf4 14 26638197 to 26657258 19061 + protein coding gene ADP-ribosylation factor 4
Tssr124692 14 26638237 to 26638249 12 + TSS region transcription start site region 124692
Tssr124693 14 26645589 to 26645593 4 + TSS region transcription start site region 124693
Tssr124694 14 26646706 to 26646715 9 + TSS region transcription start site region 124694
Tssr124695 14 26649246 to 26649249 3 + TSS region transcription start site region 124695
Tssr124696 14 26652236 to 26652241 5 + TSS region transcription start site region 124696
Tssr124697 14 26655886 to 26655964 78 + TSS region transcription start site region 124697
Tssr124698 14 26655984 to 26655997 13 + TSS region transcription start site region 124698
Tssr124699 14 26656001 to 26656040 39 + TSS region transcription start site region 124699
Tssr124700 14 26656082 to 26656099 17 + TSS region transcription start site region 124700
Tssr124701 14 26656103 to 26656116 13 + TSS region transcription start site region 124701
Tssr124702 14 26656170 to 26656185 15 + TSS region transcription start site region 124702
Tssr124703 14 26656484 to 26656503 19 + TSS region transcription start site region 124703
Pde12 14 26664117 to 26669846 5729 - protein coding gene phosphodiesterase 12
Cpgi6249 14 26668358 to 26670188 1830 CpG island CpG island 6249
Mir7672 14 26669547 to 26669608 61 - miRNA gene microRNA 7672
Tssr127794 14 26669626 to 26669691 65 - TSS region transcription start site region 127794
Tssr127795 14 26669835 to 26669846 11 - TSS region transcription start site region 127795
Tssr124704 14 26669939 to 26669971 32 + TSS region transcription start site region 124704
9930004E17Rik 14 26670010 to 26670507 497 + antisense lncRNA gene RIKEN cDNA 9930004E17 gene
Tssr124705 14 26673176 to 26673184 8 + TSS region transcription start site region 124705
Tssr124706 14 26691611 to 26691636 25 + TSS region transcription start site region 124706
Tssr124707 14 26691661 to 26691671 10 + TSS region transcription start site region 124707
Tssr124708 14 26693254 to 26693262 8 + TSS region transcription start site region 124708
Tssr124709 14 26693267 to 26693277 10 + TSS region transcription start site region 124709
Dnah12 14 26693274 to 26891703 198429 + protein coding gene dynein, axonemal, heavy chain 12
Tssr124710 14 26693285 to 26693296 11 + TSS region transcription start site region 124710
Tssr124711 14 26766172 to 26766202 30 + TSS region transcription start site region 124711
Tssr124712 14 26766324 to 26766332 8 + TSS region transcription start site region 124712
Tssr124713 14 26766442 to 26766456 14 + TSS region transcription start site region 124713
Gm34415 14 26804553 to 26808353 3800 + pseudogene predicted gene, 34415
4933407A17Rik 14 26834131 to 26836274 2143 unclassified gene RIKEN cDNA 4933407A17 gene
Asb14 14 26894588 to 26915257 20669 + protein coding gene ankyrin repeat and SOCS box-containing 14
Tssr124714 14 26894599 to 26894604 5 + TSS region transcription start site region 124714
Tssr124715 14 26894606 to 26894627 21 + TSS region transcription start site region 124715
Tssr127796 14 26916880 to 26916922 42 - TSS region transcription start site region 127796
Tssr127797 14 26917103 to 26917140 37 - TSS region transcription start site region 127797
Appl1 14 26918986 to 26971205 52219 - protein coding gene adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
Gm41115 14 26926455 to 26926762 307 + pseudogene predicted gene, 41115
Tssr127798 14 26928612 to 26928624 12 - TSS region transcription start site region 127798
Tssr127799 14 26939917 to 26939926 9 - TSS region transcription start site region 127799
Tssr4348 14 26965886 to 26965890 4 - TSS region transcription start site region 4348
Gm41114 14 26966234 to 26968808 2574 - lncRNA gene predicted gene, 41114
Cpgi6250 14 26969742 to 26970935 1193 CpG island CpG island 6250
Tssr124716 14 26969910 to 26969964 54 + TSS region transcription start site region 124716
Tssr4349 14 26970395 to 26970403 8 - TSS region transcription start site region 4349
Tssr127800 14 26970447 to 26970556 109 - TSS region transcription start site region 127800
Tssr127801 14 26970558 to 26970596 38 - TSS region transcription start site region 127801
Tssr127802 14 26970820 to 26970843 23 - TSS region transcription start site region 127802
Cpgi6251 14 26976875 to 26977101 226 CpG island CpG island 6251
Tssr127803 14 26981625 to 26981630 5 - TSS region transcription start site region 127803
Hesx1 14 26994424 to 27002329 7905 + protein coding gene homeobox gene expressed in ES cells
Tssr124717 14 27000493 to 27000507 14 + TSS region transcription start site region 124717
Tssr124718 14 27000666 to 27000679 13 + TSS region transcription start site region 124718
Tssr124719 14 27000705 to 27000716 11 + TSS region transcription start site region 124719