Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:23804420-24934425

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnma1 14 23292291 to 24004952 712661 - protein coding gene potassium large conductance calcium-activated channel, subfamily M, alpha member 1
Tssr127722 14 23835541 to 23835567 26 - TSS region transcription start site region 127722
Tssr127723 14 23835846 to 23835855 9 - TSS region transcription start site region 127723
Tssr127724 14 23962219 to 23962222 3 - TSS region transcription start site region 127724
Tssr127725 14 23967112 to 23967115 3 - TSS region transcription start site region 127725
Tssr127726 14 23967148 to 23967160 12 - TSS region transcription start site region 127726
D14Mit222 14 23974070 to 23974186 116 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 222
Tssr127727 14 23989382 to 23989386 4 - TSS region transcription start site region 127727
Cpgi6232 14 24003350 to 24005462 2112 CpG island CpG island 6232
Tssr127728 14 24003926 to 24003984 58 - TSS region transcription start site region 127728
Tssr127729 14 24004118 to 24004144 26 - TSS region transcription start site region 127729
Tssr127730 14 24004207 to 24004258 51 - TSS region transcription start site region 127730
Tssr127731 14 24004284 to 24004300 16 - TSS region transcription start site region 127731
Tssr127732 14 24004487 to 24004530 43 - TSS region transcription start site region 127732
Tssr127733 14 24004876 to 24004906 30 - TSS region transcription start site region 127733
Tssr127734 14 24004952 to 24004980 28 - TSS region transcription start site region 127734
4930519K11Rik 14 24004991 to 24005837 846 + bidirectional promoter lncRNA gene RIKEN cDNA 4930519K11 gene
Gm46444 14 24011055 to 24019327 8272 - lncRNA gene predicted gene, 46444
Gm31392 14 24044637 to 24067117 22480 - lincRNA gene predicted gene, 31392
Gm6158 14 24069734 to 24070637 903 + pseudogene predicted gene 6158
Tssr124573 14 24069752 to 24069754 2 + TSS region transcription start site region 124573
Gm31250 14 24073384 to 24073852 468 - lncRNA gene predicted gene, 31250
Tssr127735 14 24081947 to 24081959 12 - TSS region transcription start site region 127735
Tssr127736 14 24081961 to 24081981 20 - TSS region transcription start site region 127736
Tssr127737 14 24081985 to 24081988 3 - TSS region transcription start site region 127737
Tssr127738 14 24081998 to 24082009 11 - TSS region transcription start site region 127738
Tssr127739 14 24082016 to 24082024 8 - TSS region transcription start site region 127739
Tssr124574 14 24082077 to 24082083 6 + TSS region transcription start site region 124574
Tssr124575 14 24082105 to 24082121 16 + TSS region transcription start site region 124575
Tssr124576 14 24082132 to 24082152 20 + TSS region transcription start site region 124576
Mir7210 14 24088877 to 24088930 53 + miRNA gene microRNA 7210
Tssr124577 14 24099570 to 24099603 33 + TSS region transcription start site region 124577
Tssr124578 14 24100163 to 24100174 11 + TSS region transcription start site region 124578
Tssr124579 14 24100286 to 24100293 7 + TSS region transcription start site region 124579
Tssr124580 14 24104177 to 24104193 16 + TSS region transcription start site region 124580
Tssr124581 14 24108819 to 24108821 2 + TSS region transcription start site region 124581
Tssr124582 14 24118764 to 24118768 4 + TSS region transcription start site region 124582
Tssr124583 14 24118861 to 24118870 9 + TSS region transcription start site region 124583
Tssr124584 14 24118927 to 24118965 38 + TSS region transcription start site region 124584
Tssr124585 14 24118993 to 24119000 7 + TSS region transcription start site region 124585
Tssr124586 14 24119027 to 24119032 5 + TSS region transcription start site region 124586
1700067A10Rik 14 24119685 to 24120255 570 unclassified gene RIKEN cDNA 1700067A10 gene
Dlg5 14 24133953 to 24245920 111967 - protein coding gene discs large MAGUK scaffold protein 5
Gm49098 14 24170160 to 24170986 826 - unclassified gene predicted gene, 49098
Tssr127740 14 24176666 to 24176667 1 - TSS region transcription start site region 127740
Tssr127741 14 24176688 to 24176699 11 - TSS region transcription start site region 127741
Tssr127742 14 24176723 to 24176729 6 - TSS region transcription start site region 127742
Cpgi6233 14 24190332 to 24190494 162 CpG island CpG island 6233
Tssr124587 14 24216265 to 24216268 3 + TSS region transcription start site region 124587
Gm17105 14 24238172 to 24243391 5219 - sense intronic lncRNA gene predicted gene 17105
Cpgi6234 14 24244647 to 24246093 1446 CpG island CpG island 6234
Tssr127743 14 24245654 to 24245693 39 - TSS region transcription start site region 127743
Tssr127744 14 24245913 to 24245925 12 - TSS region transcription start site region 127744
Gm19034 14 24284926 to 24286273 1347 + pseudogene predicted gene, 19034
E330034G19Rik 14 24293214 to 24309966 16752 + protein coding gene RIKEN cDNA E330034G19 gene
Tssr124588 14 24293452 to 24293463 11 + TSS region transcription start site region 124588
Cpgi6235 14 24358342 to 24358515 173 CpG island CpG island 6235
Gm18276 14 24358359 to 24358951 592 + pseudogene predicted gene, 18276
Tssr127745 14 24369420 to 24369425 5 - TSS region transcription start site region 127745
Tssr127746 14 24369781 to 24369793 12 - TSS region transcription start site region 127746
Tssr127747 14 24369801 to 24369808 7 - TSS region transcription start site region 127747
Tssr127748 14 24369813 to 24369819 6 - TSS region transcription start site region 127748
Gm47774 14 24375653 to 24377252 1599 - lincRNA gene predicted gene, 47774
Gm41108 14 24390017 to 24391714 1697 + lncRNA gene predicted gene, 41108
Gm41109 14 24425164 to 24429822 4658 - lncRNA gene predicted gene, 41109
Tssr127749 14 24429816 to 24429830 14 - TSS region transcription start site region 127749
Gm47814 14 24438987 to 24446403 7416 - lincRNA gene predicted gene, 47814
Tssr4343 14 24446457 to 24446463 6 - TSS region transcription start site region 4343
4933428L12Rik 14 24446554 to 24447927 1373 unclassified gene RIKEN cDNA 4933428L12 gene
Polr3a 14 24448696 to 24487058 38362 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide A
Cpgi6236 14 24486590 to 24487238 648 CpG island CpG island 6236
Tssr127750 14 24486966 to 24486976 10 - TSS region transcription start site region 127750
Tssr127751 14 24486994 to 24487064 70 - TSS region transcription start site region 127751
Tssr124589 14 24487055 to 24487088 33 + TSS region transcription start site region 124589
Cpgi6237 14 24490411 to 24491327 916 CpG island CpG island 6237
Rps24 14 24490633 to 24496146 5513 + protein coding gene ribosomal protein S24
Tssr124590 14 24490678 to 24490689 11 + TSS region transcription start site region 124590
Tssr124591 14 24490709 to 24490725 16 + TSS region transcription start site region 124591
Tssr124592 14 24490749 to 24490756 7 + TSS region transcription start site region 124592
Tssr127752 14 24491751 to 24491756 5 - TSS region transcription start site region 127752
Tssr124593 14 24492828 to 24492832 4 + TSS region transcription start site region 124593
Gm31720 14 24518027 to 24527097 9070 - lncRNA gene predicted gene, 31720
4930542C16Rik 14 24597266 to 24617467 20201 - lincRNA gene RIKEN cDNA 4930542C16 gene
9430052A13Rik 14 24605434 to 24606588 1154 unclassified gene RIKEN cDNA 9430052A13 gene
Tssr127753 14 24617483 to 24617492 9 - TSS region transcription start site region 127753
4931403M11Rik 14 24617555 to 24631373 13818 + lincRNA gene RIKEN cDNA 4931403M11 gene
4930428N03Rik 14 24621028 to 24622869 1841 + lincRNA gene RIKEN cDNA 4930428N03 gene
Tssr124594 14 24622132 to 24622143 11 + TSS region transcription start site region 124594
Tssr124595 14 24622151 to 24622158 7 + TSS region transcription start site region 124595
Gm31775 14 24665189 to 24772703 107514 + lncRNA gene predicted gene, 31775
Cpgi6238 14 24779009 to 24779691 682 CpG island CpG island 6238
Gm31838 14 24781078 to 24814312 33234 + lncRNA gene predicted gene, 31838
Gm32008 14 24817855 to 24875381 57526 + lncRNA gene predicted gene, 32008
Gm31951 14 24829064 to 24830336 1272 - lncRNA gene predicted gene, 31951
Gm47906 14 24833635 to 24835089 1454 + lincRNA gene predicted gene, 47906
Gm41110 14 24878062 to 24890922 12860 - lncRNA gene predicted gene, 41110
Gm10398 14 24909414 to 24913440 4026 + lincRNA gene predicted gene 10398
D14Mit253 14 24925824 to 24925942 118 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 253
Modor2 14 24925824 to 57942312 33016488 QTL modifier of ocular retardation 2