Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:119731634-120791877

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hs6st3 14 119138341 to 119869815 731474 + protein coding gene heparan sulfate 6-O-sulfotransferase 3
Tssr127212 14 119749226 to 119749238 12 + TSS region transcription start site region 127212
1700006F04Rik 14 119749227 to 119751564 2337 + sense intronic lncRNA gene RIKEN cDNA 1700006F04 gene
Gm48985 14 119784759 to 119785094 335 - pseudogene predicted gene, 48985
Gm41249 14 119796033 to 119798983 2950 - lncRNA gene predicted gene, 41249
4930404K13Rik 14 119798978 to 119817574 18596 + sense intronic lncRNA gene RIKEN cDNA 4930404K13 gene
Cpgi6869 14 119869182 to 119869510 328 CpG island CpG island 6869
Tssr127213 14 119875643 to 119875648 5 + TSS region transcription start site region 127213
Tssr127214 14 119875713 to 119875730 17 + TSS region transcription start site region 127214
D14Mit131.1 14 120006409 to 120006533 124 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 131.1
D14Mit131 14 120006565 to 120006669 104 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 131
Oxgr1 14 120019585 to 120042435 22850 - protein coding gene oxoglutarate (alpha-ketoglutarate) receptor 1
Gabarapl2-ps 14 120020411 to 120020976 565 - pseudogene GABA(A) receptor-associated protein-like 2 pseudogene
Tssr130251 14 120042429 to 120042471 42 - TSS region transcription start site region 130251
Gm20167 14 120077510 to 120077659 149 + pseudogene predicted gene, 20167
Gm4681 14 120089943 to 120142165 52222 - lincRNA gene predicted gene 4681
Gm48997 14 120129924 to 120130603 679 - lincRNA gene predicted gene, 48997
D14Dcr10 14 120135078 to 120135169 91 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 10
Cpgi6870 14 120137824 to 120138159 335 CpG island CpG island 6870
Cpgi6871 14 120139492 to 120139884 392 CpG island CpG island 6871
Gm41250 14 120153164 to 120172080 18916 + lncRNA gene predicted gene, 41250
Cpgi6872 14 120261634 to 120261877 243 CpG island CpG island 6872
Cpgi6873 14 120275392 to 120275808 416 CpG island CpG island 6873
Tssr127215 14 120275664 to 120275682 18 + TSS region transcription start site region 127215
Mbnl2 14 120275669 to 120431697 156028 + protein coding gene muscleblind like splicing factor 2
Tssr127216 14 120275698 to 120275714 16 + TSS region transcription start site region 127216
Tssr127217 14 120275759 to 120275769 10 + TSS region transcription start site region 127217
Tssr4528 14 120277150 to 120277161 11 - TSS region transcription start site region 4528
Tssr4529 14 120278952 to 120278965 13 - TSS region transcription start site region 4529
Tssr130252 14 120278975 to 120278986 11 - TSS region transcription start site region 130252
Tssr4530 14 120279002 to 120279013 11 - TSS region transcription start site region 4530
Tssr127218 14 120286953 to 120286957 4 + TSS region transcription start site region 127218
Tssr127219 14 120303321 to 120303347 26 + TSS region transcription start site region 127219
Tssr127220 14 120306445 to 120306461 16 + TSS region transcription start site region 127220
Tssr127221 14 120326557 to 120326578 21 + TSS region transcription start site region 127221
Tssr127222 14 120326629 to 120326642 13 + TSS region transcription start site region 127222
Tssr127223 14 120326687 to 120326732 45 + TSS region transcription start site region 127223
Cpgi6874 14 120330574 to 120330736 162 CpG island CpG island 6874
B930025B16Rik 14 120339699 to 120341676 1977 unclassified gene RIKEN cDNA B930025B16 gene
Tssr127224 14 120359435 to 120359452 17 + TSS region transcription start site region 127224
Gm26679 14 120384261 to 120388161 3900 - antisense lncRNA gene predicted gene, 26679
Cpgi6875 14 120388885 to 120389344 459 CpG island CpG island 6875
Cpgi6876 14 120396480 to 120396687 207 CpG island CpG island 6876
Tssr127225 14 120397149 to 120397153 4 + TSS region transcription start site region 127225
5830407P18Rik 14 120397586 to 120401581 3995 unclassified gene RIKEN cDNA 5830407P18 gene
Tssr127226 14 120408509 to 120408514 5 + TSS region transcription start site region 127226
Tssr127227 14 120412302 to 120412315 13 + TSS region transcription start site region 127227
Tssr127228 14 120413045 to 120413079 34 + TSS region transcription start site region 127228
Tssr127229 14 120413326 to 120413367 41 + TSS region transcription start site region 127229
Tssr127230 14 120414785 to 120414790 5 + TSS region transcription start site region 127230
Tssr4531 14 120418265 to 120418272 7 + TSS region transcription start site region 4531
Tssr127231 14 120418879 to 120418895 16 + TSS region transcription start site region 127231
Tssr127232 14 120418951 to 120418963 12 + TSS region transcription start site region 127232
Tssr130253 14 120422917 to 120422943 26 - TSS region transcription start site region 130253
Tssr127233 14 120429810 to 120429831 21 + TSS region transcription start site region 127233
Tssr127234 14 120430040 to 120430080 40 + TSS region transcription start site region 127234
Tssr127235 14 120430101 to 120430142 41 + TSS region transcription start site region 127235
Tssr127236 14 120430195 to 120430218 23 + TSS region transcription start site region 127236
Tssr127237 14 120430238 to 120430271 33 + TSS region transcription start site region 127237
Tssr127238 14 120430314 to 120430379 65 + TSS region transcription start site region 127238
Tssr127239 14 120430561 to 120430574 13 + TSS region transcription start site region 127239
Tssr127240 14 120430603 to 120430666 63 + TSS region transcription start site region 127240
Tssr127241 14 120430673 to 120430687 14 + TSS region transcription start site region 127241
Tssr127242 14 120430689 to 120430786 97 + TSS region transcription start site region 127242
Tssr127243 14 120430868 to 120430887 19 + TSS region transcription start site region 127243
Tssr127244 14 120431263 to 120431308 45 + TSS region transcription start site region 127244
Cpgi6877 14 120477105 to 120479346 2241 CpG island CpG island 6877
Tssr127245 14 120478322 to 120478351 29 + TSS region transcription start site region 127245
Tssr127246 14 120478354 to 120478392 38 + TSS region transcription start site region 127246
Tssr127247 14 120478443 to 120478510 67 + TSS region transcription start site region 127247
Rap2a 14 120478461 to 120507194 28733 + protein coding gene RAS related protein 2a
Tssr127248 14 120478530 to 120478535 5 + TSS region transcription start site region 127248
Tssr127249 14 120478681 to 120478689 8 + TSS region transcription start site region 127249
Tssr127250 14 120480202 to 120480208 6 + TSS region transcription start site region 127250
Tssr127251 14 120480857 to 120480860 3 + TSS region transcription start site region 127251
Tssr127252 14 120491011 to 120491013 2 + TSS region transcription start site region 127252
Tssr127253 14 120494602 to 120494603 1 + TSS region transcription start site region 127253
Tssr127254 14 120506194 to 120506203 9 + TSS region transcription start site region 127254
Tssr127255 14 120506245 to 120506258 13 + TSS region transcription start site region 127255
Gm41251 14 120532514 to 120559629 27115 + lncRNA gene predicted gene, 41251
D14Mit77 14 120563853 to 120564037 184 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 77
Gm41252 14 120572434 to 120582427 9993 + lncRNA gene predicted gene, 41252
Gm33077 14 120610720 to 120613544 2824 + lncRNA gene predicted gene, 33077
Gm49008 14 120632962 to 120660850 27888 + lincRNA gene predicted gene, 49008
Tssr4532 14 120637002 to 120637045 43 + TSS region transcription start site region 4532
4930424E08Rik 14 120637022 to 120638218 1196 + lncRNA gene RIKEN cDNA 4930424E08 gene
Rpl19-ps5 14 120713078 to 120713666 588 + pseudogene ribosomal protein L19, pseudogene 5
Cpgi6878 14 120721239 to 120721417 178 CpG island CpG island 6878
Gm17613 14 120749185 to 120750062 877 + lincRNA gene predicted gene, 17613
Tssr130254 14 120774606 to 120774609 3 - TSS region transcription start site region 130254