Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:118209072-118919343

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq4 14 110973777 to 118462433 7488656 QTL open field activity QTL 4
4933431J24Rik 14 118209378 to 118213145 3767 + lincRNA gene RIKEN cDNA 4933431J24 gene
Gm31981 14 118210421 to 118211529 1108 - lncRNA gene predicted gene, 31981
Tssr130218 14 118211670 to 118211679 9 - TSS region transcription start site region 130218
Tssr127168 14 118212339 to 118212350 11 + TSS region transcription start site region 127168
Gm32045 14 118222761 to 118226364 3603 - lncRNA gene predicted gene, 32045
Tssr130219 14 118223897 to 118223947 50 - TSS region transcription start site region 130219
Cpgi6849 14 118225615 to 118226282 667 CpG island CpG island 6849
Cpgi6850 14 118231128 to 118231735 607 CpG island CpG island 6850
Sox21 14 118233233 to 118237030 3797 - protein coding gene SRY (sex determining region Y)-box 21
Cpgi6851 14 118234247 to 118237450 3203 CpG island CpG island 6851
Tssr130220 14 118236118 to 118236145 27 - TSS region transcription start site region 130220
Tssr130221 14 118236216 to 118236242 26 - TSS region transcription start site region 130221
Gm4675 14 118236232 to 118261199 24967 + lincRNA gene predicted gene 4675
Tssr130222 14 118236638 to 118236663 25 - TSS region transcription start site region 130222
Tssr130223 14 118236961 to 118236970 9 - TSS region transcription start site region 130223
Tssr130224 14 118236992 to 118237013 21 - TSS region transcription start site region 130224
Tssr130225 14 118237016 to 118237035 19 - TSS region transcription start site region 130225
Tssr130226 14 118237038 to 118237047 9 - TSS region transcription start site region 130226
Tssr4523 14 118253963 to 118253969 6 + TSS region transcription start site region 4523
Mir6241 14 118258634 to 118258736 102 + miRNA gene microRNA 6241
Gm9376 14 118267158 to 118267779 621 + protein coding gene predicted gene 9376
1700027M17Rik 14 118279291 to 118279536 245 unclassified gene RIKEN cDNA 1700027M17 gene
Gm23669 14 118299990 to 118300117 127 + snoRNA gene predicted gene, 23669
Gm32093 14 118322977 to 118325899 2922 + lincRNA gene predicted gene, 32093
Gm26791 14 118363732 to 118384768 21036 + lincRNA gene predicted gene, 26791
1700044C05Rik 14 118365878 to 118398165 32287 + lincRNA gene RIKEN cDNA 1700044C05 gene
Tssr130227 14 118368565 to 118368568 3 - TSS region transcription start site region 130227
Tssr130228 14 118370405 to 118370413 8 - TSS region transcription start site region 130228
Gm5672 14 118375263 to 118376196 933 - pseudogene predicted gene 5672
Cpgi6852 14 118421286 to 118421450 164 CpG island CpG island 6852
Tssr4524 14 118428376 to 118428382 6 + TSS region transcription start site region 4524
D14Mit97 14 118434142 to 118434278 136 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 97
D14Dcr9 14 118434159 to 118434263 104 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 9
Cpgi6853 14 118436789 to 118437768 979 CpG island CpG island 6853
Tssr4525 14 118457496 to 118457499 3 + TSS region transcription start site region 4525
Cpgi6854 14 118473227 to 118474291 1064 CpG island CpG island 6854
Abcc4 14 118482692 to 118706219 223527 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 4
Tssr130229 14 118511389 to 118511392 3 - TSS region transcription start site region 130229
Tssr127169 14 118543243 to 118543247 4 + TSS region transcription start site region 127169
Gm49033 14 118564072 to 118564343 271 + pseudogene predicted gene, 49033
Gm23302 14 118585039 to 118585138 99 + snRNA gene predicted gene, 23302
Mir6391 14 118592369 to 118592472 103 - miRNA gene microRNA 6391
Tssr127170 14 118594415 to 118594421 6 + TSS region transcription start site region 127170
Tssr130230 14 118594875 to 118594896 21 - TSS region transcription start site region 130230
Cpgi6855 14 118658044 to 118658295 251 CpG island CpG island 6855
Tssr4526 14 118662739 to 118662753 14 - TSS region transcription start site region 4526
4930544L18Rik 14 118663492 to 118665618 2126 unclassified gene RIKEN cDNA 4930544L18 gene
Tssr130231 14 118693788 to 118693796 8 - TSS region transcription start site region 130231
Gm41247 14 118695102 to 118697741 2639 - lncRNA gene predicted gene, 41247
Cpgi6856 14 118705435 to 118706780 1345 CpG island CpG island 6856
A830021K08Rik 14 118705652 to 118707617 1965 protein coding gene RIKEN cDNA A830021K08 gene
Tssr130232 14 118706150 to 118706176 26 - TSS region transcription start site region 130232
Tssr130233 14 118706180 to 118706234 54 - TSS region transcription start site region 130233
Tssr130234 14 118706423 to 118706435 12 - TSS region transcription start site region 130234
Tssr130235 14 118706440 to 118706469 29 - TSS region transcription start site region 130235
Cpgi6857 14 118713525 to 118713827 302 CpG island CpG island 6857
Gm27198 14 118727794 to 118735145 7351 - lincRNA gene predicted gene 27198
D14Mit275 14 118734451 to 118734555 104 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology-275
Tssr130236 14 118735143 to 118735160 17 - TSS region transcription start site region 130236
Gm46484 14 118748220 to 118755721 7501 - lncRNA gene predicted gene, 46484
Cpgi6858 14 118768237 to 118768456 219 CpG island CpG island 6858
Gm22379 14 118775152 to 118775282 130 + snoRNA gene predicted gene, 22379
Cldn10 14 118787871 to 118874525 86654 + protein coding gene claudin 10
Tssr127171 14 118787894 to 118787942 48 + TSS region transcription start site region 127171
Tssr127172 14 118787946 to 118787951 5 + TSS region transcription start site region 127172
Tssr4527 14 118787959 to 118787962 3 + TSS region transcription start site region 4527
Gm41248 14 118808500 to 118810387 1887 - lncRNA gene predicted gene, 41248
Gm32382 14 118815311 to 118820245 4934 - lncRNA gene predicted gene, 32382
n-R5s51 14 118826909 to 118827031 122 - rRNA gene nuclear encoded rRNA 5S 51
Tssr130237 14 118853144 to 118853156 12 - TSS region transcription start site region 130237
Cpgi6859 14 118854403 to 118855610 1207 CpG island CpG island 6859
Tssr127173 14 118854695 to 118854700 5 + TSS region transcription start site region 127173
Tssr130238 14 118854842 to 118854856 14 - TSS region transcription start site region 130238
Tssr127174 14 118854955 to 118854976 21 + TSS region transcription start site region 127174
Dzip1 14 118875520 to 118925460 49940 - protein coding gene DAZ interacting protein 1
Gm49179 14 118875882 to 118880860 4978 + antisense lncRNA gene predicted gene, 49179
Tssr130239 14 118876661 to 118876665 4 - TSS region transcription start site region 130239
Tssr130240 14 118876893 to 118876896 3 - TSS region transcription start site region 130240
Tssr130241 14 118917507 to 118917534 27 - TSS region transcription start site region 130241
Tssr130242 14 118917552 to 118917569 17 - TSS region transcription start site region 130242