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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:117588896-118589973

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq4 14 110973777 to 118462433 7488656 QTL open field activity QTL 4
Gpc6 14 116925315 to 117976544 1051229 + protein coding gene glypican 6
3110035F07Rik 14 117665574 to 117666028 454 unclassified gene RIKEN cDNA 3110035F07 gene
Tssr127163 14 117679969 to 117679973 4 + TSS region transcription start site region 127163
Tssr127164 14 117826878 to 117826911 33 + TSS region transcription start site region 127164
5730405N03Rik 14 117902759 to 117904986 2227 unclassified non-coding RNA gene RIKEN cDNA 5730405N03 gene
Mir6239 14 117953743 to 117953847 104 - miRNA gene microRNA 6239
Cpgi6843 14 118001333 to 118001588 255 CpG island CpG island 6843
D14Dcr8 14 118008530 to 118008625 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 8
Dct 14 118012790 to 118052244 39454 - protein coding gene dopachrome tautomerase
Tssr130207 14 118012823 to 118012837 14 - TSS region transcription start site region 130207
Tssr130208 14 118012996 to 118013007 11 - TSS region transcription start site region 130208
Tssr130209 14 118030685 to 118030687 2 - TSS region transcription start site region 130209
4930435M08Rik 14 118044974 to 118046864 1890 + antisense lncRNA gene RIKEN cDNA 4930435M08 gene
Tssr130210 14 118051996 to 118051999 3 - TSS region transcription start site region 130210
Tssr130211 14 118052024 to 118052027 3 - TSS region transcription start site region 130211
Tssr130212 14 118052041 to 118052063 22 - TSS region transcription start site region 130212
Tssr4522 14 118052088 to 118052097 9 - TSS region transcription start site region 4522
Tssr130213 14 118052145 to 118052154 9 - TSS region transcription start site region 130213
Tssr130214 14 118052235 to 118052253 18 - TSS region transcription start site region 130214
1700008A07Rik 14 118088569 to 118089272 703 unclassified gene RIKEN cDNA 1700008A07 gene
Cpgi6844 14 118088896 to 118089973 1077 CpG island CpG island 6844
n-TFgaa5 14 118089525 to 118089597 72 - tRNA gene nuclear encoded tRNA pheylalanine 5 (anticodon GAA)
Tssr127165 14 118089674 to 118089702 28 + TSS region transcription start site region 127165
Gm31633 14 118090783 to 118095154 4371 + lncRNA gene predicted gene, 31633
2700005E23Rik 14 118091132 to 118091776 644 unclassified gene RIKEN cDNA 2700005E23 gene
Tssr127166 14 118098455 to 118098460 5 + TSS region transcription start site region 127166
Gm26773 14 118107831 to 118117100 9269 + lincRNA gene predicted gene, 26773
Tssr130215 14 118108588 to 118108594 6 - TSS region transcription start site region 130215
Tgds 14 118111911 to 118132755 20844 - protein coding gene TDP-glucose 4,6-dehydratase
Cpgi6845 14 118132540 to 118132935 395 CpG island CpG island 6845
Tssr130216 14 118132733 to 118132761 28 - TSS region transcription start site region 130216
Tssr130217 14 118132763 to 118132774 11 - TSS region transcription start site region 130217
Cpgi6846 14 118136458 to 118137672 1214 CpG island CpG island 6846
Tssr127167 14 118137101 to 118137178 77 + TSS region transcription start site region 127167
Gpr180 14 118137158 to 118163261 26103 + protein coding gene G protein-coupled receptor 180
Cpgi6847 14 118175092 to 118175550 458 CpG island CpG island 6847
Cpgi6848 14 118180417 to 118180576 159 CpG island CpG island 6848
Gm4674 14 118181507 to 118182129 622 - pseudogene predicted gene 4674
4933431J24Rik 14 118209378 to 118213145 3767 + lincRNA gene RIKEN cDNA 4933431J24 gene
Gm31981 14 118210421 to 118211529 1108 - lncRNA gene predicted gene, 31981
Tssr130218 14 118211670 to 118211679 9 - TSS region transcription start site region 130218
Tssr127168 14 118212339 to 118212350 11 + TSS region transcription start site region 127168
Gm32045 14 118222761 to 118226364 3603 - lncRNA gene predicted gene, 32045
Tssr130219 14 118223897 to 118223947 50 - TSS region transcription start site region 130219
Cpgi6849 14 118225615 to 118226282 667 CpG island CpG island 6849
Cpgi6850 14 118231128 to 118231735 607 CpG island CpG island 6850
Sox21 14 118233233 to 118237030 3797 - protein coding gene SRY (sex determining region Y)-box 21
Cpgi6851 14 118234247 to 118237450 3203 CpG island CpG island 6851
Tssr130220 14 118236118 to 118236145 27 - TSS region transcription start site region 130220
Tssr130221 14 118236216 to 118236242 26 - TSS region transcription start site region 130221
Gm4675 14 118236232 to 118261199 24967 + lincRNA gene predicted gene 4675
Tssr130222 14 118236638 to 118236663 25 - TSS region transcription start site region 130222
Tssr130223 14 118236961 to 118236970 9 - TSS region transcription start site region 130223
Tssr130224 14 118236992 to 118237013 21 - TSS region transcription start site region 130224
Tssr130225 14 118237016 to 118237035 19 - TSS region transcription start site region 130225
Tssr130226 14 118237038 to 118237047 9 - TSS region transcription start site region 130226
Tssr4523 14 118253963 to 118253969 6 + TSS region transcription start site region 4523
Mir6241 14 118258634 to 118258736 102 + miRNA gene microRNA 6241
Gm9376 14 118267158 to 118267779 621 + protein coding gene predicted gene 9376
1700027M17Rik 14 118279291 to 118279536 245 unclassified gene RIKEN cDNA 1700027M17 gene
Gm23669 14 118299990 to 118300117 127 + snoRNA gene predicted gene, 23669
Gm32093 14 118322977 to 118325899 2922 + lincRNA gene predicted gene, 32093
Gm26791 14 118363732 to 118384768 21036 + lincRNA gene predicted gene, 26791
1700044C05Rik 14 118365878 to 118398165 32287 + lincRNA gene RIKEN cDNA 1700044C05 gene
Tssr130227 14 118368565 to 118368568 3 - TSS region transcription start site region 130227
Tssr130228 14 118370405 to 118370413 8 - TSS region transcription start site region 130228
Gm5672 14 118375263 to 118376196 933 - pseudogene predicted gene 5672
Cpgi6852 14 118421286 to 118421450 164 CpG island CpG island 6852
Tssr4524 14 118428376 to 118428382 6 + TSS region transcription start site region 4524
D14Mit97 14 118434142 to 118434278 136 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 97
D14Dcr9 14 118434159 to 118434263 104 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 9
Cpgi6853 14 118436789 to 118437768 979 CpG island CpG island 6853
Tssr4525 14 118457496 to 118457499 3 + TSS region transcription start site region 4525
Cpgi6854 14 118473227 to 118474291 1064 CpG island CpG island 6854
Abcc4 14 118482692 to 118706219 223527 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 4
Tssr130229 14 118511389 to 118511392 3 - TSS region transcription start site region 130229
Tssr127169 14 118543243 to 118543247 4 + TSS region transcription start site region 127169
Gm49033 14 118564072 to 118564343 271 + pseudogene predicted gene, 49033
Gm23302 14 118585039 to 118585138 99 + snRNA gene predicted gene, 23302