Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:11538031-14108133

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi6163 14 11552671 to 11555315 2644 CpG island CpG island 6163
Tssr124258 14 11553461 to 11553484 23 + TSS region transcription start site region 124258
Tssr124259 14 11553499 to 11553514 15 + TSS region transcription start site region 124259
Tssr124260 14 11553523 to 11553542 19 + TSS region transcription start site region 124260
Ptprg 14 11553553 to 12242040 688487 + protein coding gene protein tyrosine phosphatase, receptor type, G
Bomd2 14 11553553 to 12242040 688487 QTL bone mineral density 2
Tssr124261 14 11553555 to 11553564 9 + TSS region transcription start site region 124261
Tssr124262 14 11553568 to 11553597 29 + TSS region transcription start site region 124262
Tssr124263 14 11553598 to 11553615 17 + TSS region transcription start site region 124263
Tssr124264 14 11553702 to 11553773 71 + TSS region transcription start site region 124264
Cpgi6164 14 11555654 to 11555906 252 CpG island CpG island 6164
Cpgi6165 14 11556281 to 11556747 466 CpG island CpG island 6165
Tssr124265 14 11570018 to 11570031 13 + TSS region transcription start site region 124265
Tssr124266 14 11570039 to 11570051 12 + TSS region transcription start site region 124266
Tssr124267 14 11570100 to 11570115 15 + TSS region transcription start site region 124267
Tssr124268 14 11604056 to 11604060 4 + TSS region transcription start site region 124268
Tssr124269 14 11617662 to 11617691 29 + TSS region transcription start site region 124269
Tssr124270 14 11618625 to 11618629 4 + TSS region transcription start site region 124270
Tssr124271 14 11640120 to 11640121 1 + TSS region transcription start site region 124271
Tssr124272 14 11697053 to 11697057 4 + TSS region transcription start site region 124272
Gm48602 14 11767943 to 11771311 3368 + unclassified gene predicted gene, 48602
Tssr124273 14 11814525 to 11814528 3 + TSS region transcription start site region 124273
Tssr124274 14 11824362 to 11824367 5 + TSS region transcription start site region 124274
Gm48601 14 11867594 to 11870625 3031 + unclassified gene predicted gene, 48601
Gm48600 14 11904679 to 11909158 4479 + unclassified gene predicted gene, 48600
Gm3848 14 11965446 to 11981223 15777 - antisense lncRNA gene predicted gene 3848
Tssr127451 14 11981225 to 11981232 7 - TSS region transcription start site region 127451
Tssr124275 14 11986236 to 11986240 4 + TSS region transcription start site region 124275
Tssr124276 14 12046045 to 12046049 4 + TSS region transcription start site region 124276
Sluc40 14 12089820 to 12089969 149 QTL susceptibility to lung cancer 40
D14Mit11 14 12089820 to 12089969 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 11
Gm48603 14 12151447 to 12152584 1137 - unclassified gene predicted gene, 48603
Tssr124277 14 12189948 to 12189953 5 + TSS region transcription start site region 124277
Tssr124278 14 12189969 to 12190001 32 + TSS region transcription start site region 124278
Tssr124279 14 12190003 to 12190025 22 + TSS region transcription start site region 124279
Tssr124280 14 12190042 to 12190047 5 + TSS region transcription start site region 124280
D14Mit108 14 12242322 to 12242454 132 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 108
Gm49355 14 12283976 to 12324454 40478 + protein coding gene predicted gene, 49355
Cpgi6166 14 12284042 to 12284783 741 CpG island CpG island 6166
3830406C13Rik 14 12284173 to 12303231 19058 + protein coding gene RIKEN cDNA 3830406C13 gene
Tssr124281 14 12284177 to 12284194 17 + TSS region transcription start site region 124281
Tssr124282 14 12284198 to 12284239 41 + TSS region transcription start site region 124282
Tssr124283 14 12284242 to 12284271 29 + TSS region transcription start site region 124283
Tssr124284 14 12301312 to 12301319 7 + TSS region transcription start site region 124284
D030051J21Rik 14 12321379 to 12324473 3094 + lincRNA gene RIKEN cDNA D030051J21 gene
Gm24578 14 12333776 to 12333904 128 - snoRNA gene predicted gene, 24578
Cpgi6167 14 12341071 to 12341776 705 CpG island CpG island 6167
Fezf2 14 12341892 to 12345865 3973 - protein coding gene Fez family zinc finger 2
Tssr127452 14 12343313 to 12343318 5 - TSS region transcription start site region 127452
Cpgi6168 14 12343607 to 12343914 307 CpG island CpG island 6168
Tssr127453 14 12343730 to 12343749 19 - TSS region transcription start site region 127453
Cpgi6169 14 12344403 to 12346584 2181 CpG island CpG island 6169
Tssr127454 14 12344838 to 12344846 8 - TSS region transcription start site region 127454
Tssr127455 14 12345245 to 12345255 10 - TSS region transcription start site region 127455
Tssr127456 14 12345633 to 12345671 38 - TSS region transcription start site region 127456
Tssr127457 14 12345727 to 12345740 13 - TSS region transcription start site region 127457
Tssr127458 14 12345780 to 12345789 9 - TSS region transcription start site region 127458
Tssr127459 14 12345809 to 12345833 24 - TSS region transcription start site region 127459
Tssr127460 14 12345847 to 12345872 25 - TSS region transcription start site region 127460
Tssr127461 14 12346094 to 12346116 22 - TSS region transcription start site region 127461
Tssr127462 14 12346645 to 12346651 6 - TSS region transcription start site region 127462
Cpgi6170 14 12347369 to 12347562 193 CpG island CpG island 6170
Cadps 14 12372563 to 12823079 450516 - protein coding gene Ca2+-dependent secretion activator
Gm48239 14 12374585 to 12384729 10144 + antisense lncRNA gene predicted gene, 48239
Gm48267 14 12400698 to 12402230 1532 - unclassified gene predicted gene, 48267
n-R5s45 14 12427532 to 12427641 109 - rRNA gene nuclear encoded rRNA 5S 45
Tssr127463 14 12437534 to 12437555 21 - TSS region transcription start site region 127463
Tssr127464 14 12466923 to 12466939 16 - TSS region transcription start site region 127464
Tssr127465 14 12466991 to 12467010 19 - TSS region transcription start site region 127465
Tssr127466 14 12467059 to 12467081 22 - TSS region transcription start site region 127466
Tssr127467 14 12467083 to 12467100 17 - TSS region transcription start site region 127467
D14Mit10 14 12481829 to 12481959 130 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 10
sky 14 12481829 to 21012571 8530742 heritable phenotypic marker severe kyphosis
Ssen3 14 12481829 to 12481959 130 QTL suseptibility to Sendai virus 3
Mrdq4 14 12546018 to 48527625 35981607 QTL modifier of retinal degeneration QTL 4
D14Mit109 14 12570533 to 12570648 115 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 109
Gm46493 14 12578501 to 12597363 18862 - lncRNA gene predicted gene, 46493
Tssr127468 14 12616127 to 12616146 19 - TSS region transcription start site region 127468
Gm17805 14 12618668 to 12619241 573 + pseudogene predicted gene, 17805
Gm18077 14 12653337 to 12653825 488 + pseudogene predicted gene, 18077
Gm48266 14 12769408 to 12770550 1142 - unclassified gene predicted gene, 48266
Cpgi6171 14 12821515 to 12823313 1798 CpG island CpG island 6171
Tssr127469 14 12822637 to 12822649 12 - TSS region transcription start site region 127469
Tssr127470 14 12822864 to 12822875 11 - TSS region transcription start site region 127470
Tssr124285 14 12822864 to 12822872 8 + TSS region transcription start site region 124285
Tssr127471 14 12822887 to 12822907 20 - TSS region transcription start site region 127471
Tssr127472 14 12822912 to 12822926 14 - TSS region transcription start site region 127472
Tssr127473 14 12822994 to 12823012 18 - TSS region transcription start site region 127473
Tssr127474 14 12823031 to 12823133 102 - TSS region transcription start site region 127474
Tssr127475 14 12823138 to 12823151 13 - TSS region transcription start site region 127475
Tssr124286 14 12867518 to 12867540 22 + TSS region transcription start site region 124286
Gm5457 14 12867553 to 12867885 332 + pseudogene predicted pseudogene 5457
Gm48515 14 12992695 to 12995179 2484 + pseudogene predicted gene, 48515
Gm48526 14 13030370 to 13035765 5395 + lincRNA gene predicted gene, 48526
Gm5087 14 13157388 to 13284638 127250 - lncRNA gene predicted gene 5087
Tssr127476 14 13170718 to 13170722 4 - TSS region transcription start site region 127476
Tssr127477 14 13232897 to 13232903 6 - TSS region transcription start site region 127477
Cpgi6172 14 13284470 to 13284903 433 CpG island CpG island 6172
Tssr4250 14 13284624 to 13284643 19 - TSS region transcription start site region 4250
Tssr124287 14 13284753 to 13284764 11 + TSS region transcription start site region 124287
Tssr124288 14 13284774 to 13284793 19 + TSS region transcription start site region 124288
Synpr 14 13284780 to 13615469 330689 + protein coding gene synaptoporin
Tssr124289 14 13284801 to 13284827 26 + TSS region transcription start site region 124289
Gm15913 14 13352878 to 13354080 1202 - pseudogene predicted gene 15913
D14Mit147 14 13452469 to 13452592 123 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 147
D14Mit147.1 14 13452577 to 13452715 138 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 147.1
Tssr124290 14 13453937 to 13453952 15 + TSS region transcription start site region 124290
Tssr124291 14 13453971 to 13454005 34 + TSS region transcription start site region 124291
Tssr124292 14 13454010 to 13454123 113 + TSS region transcription start site region 124292
Tssr124293 14 13454130 to 13454145 15 + TSS region transcription start site region 124293
Tssr124294 14 13454194 to 13454233 39 + TSS region transcription start site region 124294
Tssr124295 14 13588839 to 13588841 2 + TSS region transcription start site region 124295
Tssr127478 14 13597107 to 13597110 3 - TSS region transcription start site region 127478
Tssr124296 14 13670867 to 13670919 52 + TSS region transcription start site region 124296
Sntn 14 13670876 to 13683148 12272 + protein coding gene sentan, cilia apical structure protein
Tssr124297 14 13670931 to 13670940 9 + TSS region transcription start site region 124297
Rpl19-ps4 14 13777817 to 13778441 624 - pseudogene ribosomal protein L19, pseudogene 4
Gm27506 14 13778072 to 13778151 79 - miRNA gene predicted gene, 27506
Tssr127479 14 13778461 to 13778473 12 - TSS region transcription start site region 127479
Gm3637 14 13791029 to 13791823 794 - pseudogene predicted gene 3637
Gm281 14 13828428 to 13914521 86093 - protein coding gene predicted gene 281
Gm25964 14 13868143 to 13868239 96 + snRNA gene predicted gene, 25964
D14Mit49 14 13888172 to 13888421 249 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 49
Cpgi6173 14 13901636 to 13901876 240 CpG island CpG island 6173
Gm18576 14 13901842 to 13902464 622 + pseudogene predicted gene, 18576
Tssr127480 14 13906482 to 13906525 43 - TSS region transcription start site region 127480
Tssr127481 14 13914464 to 13914478 14 - TSS region transcription start site region 127481
Tssr127482 14 13914493 to 13914509 16 - TSS region transcription start site region 127482
Tssr124298 14 13932587 to 13932593 6 + TSS region transcription start site region 124298
Gm11100 14 13935386 to 13948495 13109 + unclassified non-coding RNA gene predicted gene 11100
Thoc7 14 13949012 to 13961847 12835 - protein coding gene THO complex 7
Tssr127483 14 13955026 to 13955029 3 - TSS region transcription start site region 127483
Cpgi6174 14 13960650 to 13961843 1193 CpG island CpG island 6174
Tssr127484 14 13961186 to 13961199 13 - TSS region transcription start site region 127484
Tssr127485 14 13961202 to 13961278 76 - TSS region transcription start site region 127485
Tssr124299 14 13961257 to 13961286 29 + TSS region transcription start site region 124299
Tssr127486 14 13961292 to 13961303 11 - TSS region transcription start site region 127486
Tssr127487 14 13961378 to 13961442 64 - TSS region transcription start site region 127487
Atxn7 14 13961440 to 14107302 145862 + protein coding gene ataxin 7
Tssr127488 14 13961626 to 13961640 14 - TSS region transcription start site region 127488
Tssr127489 14 13961845 to 13961858 13 - TSS region transcription start site region 127489
Tssr127490 14 13961859 to 13961887 28 - TSS region transcription start site region 127490
Tssr124300 14 13976147 to 13976156 9 + TSS region transcription start site region 124300
Tssr124301 14 13999993 to 13999996 3 + TSS region transcription start site region 124301
Cpgi6175 14 14012217 to 14013707 1490 CpG island CpG island 6175
Tssr124302 14 14012627 to 14012693 66 + TSS region transcription start site region 124302
Tssr124303 14 14013125 to 14013195 70 + TSS region transcription start site region 124303
Tssr124304 14 14013529 to 14013574 45 + TSS region transcription start site region 124304
Gm31222 14 14066982 to 14072119 5137 + lncRNA gene predicted gene, 31222
Tssr124305 14 14067870 to 14067885 15 + TSS region transcription start site region 124305
Tssr127491 14 14101440 to 14101459 19 - TSS region transcription start site region 127491