Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:110813777-118622433

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frg2f8 14 110970729 to 110971498 769 + protein coding gene FSHD region gene 2 family member 8
Opfaq4 14 110973777 to 118462433 7488656 QTL open field activity QTL 4
Gm4476 14 111070216 to 111071304 1088 + pseudogene predicted gene 4476
Gm22802 14 111282046 to 111282134 88 + miRNA gene predicted gene, 22802
Gm48988 14 111349789 to 111350233 444 - pseudogene predicted gene, 48988
Gm48992 14 111432212 to 111433312 1100 - lincRNA gene predicted gene, 48992
Gm30439 14 111440591 to 111675080 234489 - lncRNA gene predicted gene, 30439
Gm48993 14 111466369 to 111466678 309 - pseudogene predicted gene, 48993
Tssr130186 14 111513832 to 111513852 20 - TSS region transcription start site region 130186
Gm18580 14 111544339 to 111545118 779 + pseudogene predicted gene, 18580
D14Mit1001 14 111651235 to 111651380 145 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 1001
D14Mit1006 14 111651350 to 111651485 135 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 1006
Cpgi6837 14 111674654 to 111676605 1951 CpG island CpG island 6837
Tssr130187 14 111674686 to 111674701 15 - TSS region transcription start site region 130187
Tssr130188 14 111674758 to 111674814 56 - TSS region transcription start site region 130188
Tssr127112 14 111674860 to 111674924 64 + TSS region transcription start site region 127112
Tssr127113 14 111675113 to 111675119 6 + TSS region transcription start site region 127113
Slitrk5 14 111675115 to 111683144 8029 + protein coding gene SLIT and NTRK-like family, member 5
Tssr127114 14 111675519 to 111675532 13 + TSS region transcription start site region 127114
Tssr127115 14 111676008 to 111676039 31 + TSS region transcription start site region 127115
Cpgi6838 14 111680812 to 111681638 826 CpG island CpG island 6838
Tssr130189 14 111778208 to 111778213 5 - TSS region transcription start site region 130189
Tssr130190 14 111778221 to 111778229 8 - TSS region transcription start site region 130190
Gm17741 14 111798412 to 111798734 322 + pseudogene predicted gene, 17741
Gm48999 14 111949264 to 111950278 1014 + pseudogene predicted gene, 48999
Gm22764 14 111965957 to 111966048 91 - snRNA gene predicted gene, 22764
Gm49000 14 112029642 to 112031238 1596 - unclassified gene predicted gene, 49000
Gm20127 14 112328718 to 112329175 457 - pseudogene predicted gene, 20127
Gm4822 14 112481367 to 112481845 478 + pseudogene predicted pseudogene 4822
Gm19223 14 112578865 to 112580551 1686 - pseudogene predicted gene, 19223
Gm41243 14 112687577 to 112721680 34103 - lncRNA gene predicted gene, 41243
Tssr130191 14 112919101 to 112919105 4 - TSS region transcription start site region 130191
Gm4486 14 112957368 to 112958203 835 + pseudogene predicted gene 4486
D14Mit200 14 113121224 to 113121371 147 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 200
Gm49005 14 113128821 to 113129193 372 + pseudogene predicted gene, 49005
Tpm3-rs7 14 113314601 to 113316720 2119 + pseudogene tropomyosin 3, related sequence 7
Tssr127116 14 113314602 to 113314608 6 + TSS region transcription start site region 127116
Tssr127117 14 113315024 to 113315056 32 + TSS region transcription start site region 127117
Tssr127118 14 113315088 to 113315129 41 + TSS region transcription start site region 127118
Gm4487 14 113490219 to 113490660 441 - pseudogene predicted gene 4487
Tssr4518 14 113574527 to 113574530 3 + TSS region transcription start site region 4518
Tssr127119 14 113900972 to 113900989 17 + TSS region transcription start site region 127119
Gm5209 14 113902027 to 113902746 719 + pseudogene predicted gene 5209
Gm18369 14 114172446 to 114173017 571 + pseudogene predicted gene, 18369
Gm9363 14 114225304 to 114225945 641 - pseudogene predicted gene 9363
Gm19829 14 114308700 to 114310803 2103 - pseudogene predicted gene, 19829
Gm29713 14 114607292 to 114611780 4488 + pseudogene predicted gene, 29713
Gm41244 14 114766661 to 114846023 79362 - lncRNA gene predicted gene, 41244
Gm37495 14 114820962 to 114821225 263 - unclassified gene predicted gene, 37495
D14Dcr6 14 114828510 to 114828616 106 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 6
4930524C18Rik 14 114831965 to 114861327 29362 + lincRNA gene RIKEN cDNA 4930524C18 gene
Cpgi6839 14 114832040 to 114832409 369 CpG island CpG island 6839
D14Ertd24e 14 114839650 to 114839856 206 DNA segment DNA segment, Chr 14, ERATO Doi 24, expressed
Tssr130192 14 114842533 to 114842540 7 - TSS region transcription start site region 130192
Gm31003 14 114864000 to 114867715 3715 + lncRNA gene predicted gene, 31003
Gm49010 14 114874944 to 114876510 1566 - lincRNA gene predicted gene, 49010
1700100I10Rik 14 114940227 to 114945948 5721 - lincRNA gene RIKEN cDNA 1700100I10 gene
Tssr130193 14 114945922 to 114945938 16 - TSS region transcription start site region 130193
Tssr130194 14 114945940 to 114945948 8 - TSS region transcription start site region 130194
Tssr130195 14 114945951 to 114945958 7 - TSS region transcription start site region 130195
Tssr127120 14 114945993 to 114946004 11 + TSS region transcription start site region 127120
Gm31072 14 114946008 to 114947579 1571 + lincRNA gene predicted gene, 31072
Tssr127121 14 114946012 to 114946030 18 + TSS region transcription start site region 127121
Tssr127122 14 114946037 to 114946042 5 + TSS region transcription start site region 127122
Tssr127123 14 114946046 to 114946058 12 + TSS region transcription start site region 127123
Tssr4519 14 114946059 to 114946063 4 + TSS region transcription start site region 4519
Tssr130196 14 114948977 to 114949012 35 - TSS region transcription start site region 130196
Tssr127124 14 114949043 to 114949084 41 + TSS region transcription start site region 127124
Gm24073 14 114980428 to 114980533 105 - snRNA gene predicted gene, 24073
Cpgi6840 14 115040229 to 115042566 2337 CpG island CpG island 6840
Tssr127125 14 115040277 to 115040288 11 + TSS region transcription start site region 127125
Tssr127126 14 115040294 to 115040329 35 + TSS region transcription start site region 127126
Tssr127127 14 115040961 to 115040978 17 + TSS region transcription start site region 127127
Tssr127128 14 115042275 to 115042287 12 + TSS region transcription start site region 127128
Tssr127129 14 115042752 to 115042756 4 + TSS region transcription start site region 127129
Tssr127130 14 115043483 to 115043487 4 + TSS region transcription start site region 127130
Mir17 14 115043671 to 115043754 83 + miRNA gene microRNA 17
Mirc1 14 115043671 to 115044506 835 complex/cluster/region microRNA cluster 1, including Mir17 through Mir92-1
Mir18 14 115043851 to 115043946 95 + miRNA gene microRNA 18
Mir19a 14 115044000 to 115044081 81 + miRNA gene microRNA 19a
Mir20a 14 115044157 to 115044263 106 + miRNA gene microRNA 20a
Mir19b-1 14 115044305 to 115044391 86 + miRNA gene microRNA 19b-1
Mir17hg 14 115044390 to 115046728 2338 + lincRNA gene Mir17 host gene (non-protein coding)
Mir92-1 14 115044427 to 115044506 79 + miRNA gene microRNA 92-1
Tssr127131 14 115044497 to 115044500 3 + TSS region transcription start site region 127131
Cpgi6841 14 115092056 to 115092989 933 CpG island CpG island 6841
Gpc5 14 115092215 to 116525179 1432964 + protein coding gene glypican 5
Tssr127132 14 115092244 to 115092278 34 + TSS region transcription start site region 127132
Tssr127133 14 115092289 to 115092296 7 + TSS region transcription start site region 127133
D14Mit96 14 115127355 to 115127503 148 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 96
Tssr127134 14 115201586 to 115201593 7 + TSS region transcription start site region 127134
Tssr130197 14 115207537 to 115207546 9 - TSS region transcription start site region 130197
4930505G20Rik 14 115396551 to 115409552 13001 - lncRNA gene RIKEN cDNA 4930505G20 gene
Tssr130198 14 115471862 to 115471876 14 - TSS region transcription start site region 130198
Tssr130199 14 115477477 to 115477495 18 - TSS region transcription start site region 130199
Tssr130200 14 115477540 to 115477551 11 - TSS region transcription start site region 130200
Tssr130201 14 115477585 to 115477600 15 - TSS region transcription start site region 130201
Tssr130202 14 115477611 to 115477616 5 - TSS region transcription start site region 130202
Tssr130203 14 115477640 to 115477647 7 - TSS region transcription start site region 130203
Gm18367 14 115555923 to 115556522 599 - pseudogene predicted gene, 18367
Tssr127135 14 115623065 to 115623070 5 + TSS region transcription start site region 127135
Tssr130204 14 115701708 to 115701719 11 - TSS region transcription start site region 130204
Gm18321 14 115772305 to 115773046 741 + pseudogene predicted gene, 18321
Gm20713 14 115788144 to 115871278 83134 - unclassified non-coding RNA gene predicted gene 20713
Tssr127136 14 115868764 to 115868767 3 + TSS region transcription start site region 127136
Tssr127137 14 115942595 to 115942598 3 + TSS region transcription start site region 127137
Tssr127138 14 115994943 to 115994947 4 + TSS region transcription start site region 127138
Tssr130205 14 116065952 to 116065953 1 - TSS region transcription start site region 130205
D14Mit118 14 116226745 to 116226882 137 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 118
D14Mit199 14 116353862 to 116354036 174 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 199
Tssr127139 14 116394995 to 116394996 1 + TSS region transcription start site region 127139
D14Mit177 14 116445034 to 116445213 179 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 177
2900036C06Rik 14 116471847 to 116472262 415 unclassified gene RIKEN cDNA 2900036C06 gene
Tssr127140 14 116529380 to 116529385 5 + TSS region transcription start site region 127140
Gm18712 14 116729367 to 116729876 509 + pseudogene predicted gene, 18712
Gm38045 14 116750215 to 116751129 914 + unclassified gene predicted gene, 38045
Gm18836 14 116858715 to 116859400 685 - pseudogene predicted gene, 18836
Cpgi6842 14 116925169 to 116927206 2037 CpG island CpG island 6842
Tssr127141 14 116925205 to 116925218 13 + TSS region transcription start site region 127141
Tssr127142 14 116925259 to 116925280 21 + TSS region transcription start site region 127142
Tssr127143 14 116925291 to 116925362 71 + TSS region transcription start site region 127143
Gpc6 14 116925315 to 117976544 1051229 + protein coding gene glypican 6
Tssr127144 14 116925379 to 116925394 15 + TSS region transcription start site region 127144
Tssr127145 14 116925505 to 116925513 8 + TSS region transcription start site region 127145
Tssr127146 14 116925516 to 116925543 27 + TSS region transcription start site region 127146
Tssr127147 14 116925545 to 116925554 9 + TSS region transcription start site region 127147
Tssr127148 14 116925558 to 116925571 13 + TSS region transcription start site region 127148
Tssr127149 14 116925772 to 116925789 17 + TSS region transcription start site region 127149
Tssr127150 14 116925803 to 116925872 69 + TSS region transcription start site region 127150
Tssr130206 14 116947989 to 116947994 5 - TSS region transcription start site region 130206
Tssr127151 14 117004576 to 117004580 4 + TSS region transcription start site region 127151
Tssr127152 14 117063129 to 117063133 4 + TSS region transcription start site region 127152
Tssr127153 14 117068520 to 117068528 8 + TSS region transcription start site region 127153
Gm41246 14 117087362 to 117090849 3487 + lncRNA gene predicted gene, 41246
8430413D17Rik 14 117203792 to 117207670 3878 unclassified gene RIKEN cDNA 8430413D17 gene
Tssr127154 14 117240678 to 117240720 42 + TSS region transcription start site region 127154
Tssr127155 14 117242108 to 117242111 3 + TSS region transcription start site region 127155
Tssr127156 14 117269686 to 117269702 16 + TSS region transcription start site region 127156
Tssr127157 14 117324723 to 117324724 1 + TSS region transcription start site region 127157
Tssr4520 14 117331095 to 117331101 6 + TSS region transcription start site region 4520
Tssr127158 14 117350332 to 117350339 7 + TSS region transcription start site region 127158
Tssr127159 14 117368209 to 117368212 3 + TSS region transcription start site region 127159
Tssr127160 14 117370910 to 117370938 28 + TSS region transcription start site region 127160
Tssr127161 14 117386106 to 117386154 48 + TSS region transcription start site region 127161
D14Mit76 14 117430929 to 117431124 195 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 76
4932442G11Rik 14 117470187 to 117477952 7765 unclassified gene RIKEN cDNA 4932442G11 gene
D14Dcr7 14 117525375 to 117525476 101 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 7
Tssr127162 14 117527479 to 117527497 18 + TSS region transcription start site region 127162
Tssr4521 14 117527619 to 117527637 18 + TSS region transcription start site region 4521
3110035F07Rik 14 117665574 to 117666028 454 unclassified gene RIKEN cDNA 3110035F07 gene
Tssr127163 14 117679969 to 117679973 4 + TSS region transcription start site region 127163
Tssr127164 14 117826878 to 117826911 33 + TSS region transcription start site region 127164
5730405N03Rik 14 117902759 to 117904986 2227 unclassified non-coding RNA gene RIKEN cDNA 5730405N03 gene
Mir6239 14 117953743 to 117953847 104 - miRNA gene microRNA 6239
Cpgi6843 14 118001333 to 118001588 255 CpG island CpG island 6843
D14Dcr8 14 118008530 to 118008625 95 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 8
Dct 14 118012790 to 118052244 39454 - protein coding gene dopachrome tautomerase
Tssr130207 14 118012823 to 118012837 14 - TSS region transcription start site region 130207
Tssr130208 14 118012996 to 118013007 11 - TSS region transcription start site region 130208
Tssr130209 14 118030685 to 118030687 2 - TSS region transcription start site region 130209
4930435M08Rik 14 118044974 to 118046864 1890 + antisense lncRNA gene RIKEN cDNA 4930435M08 gene
Tssr130210 14 118051996 to 118051999 3 - TSS region transcription start site region 130210
Tssr130211 14 118052024 to 118052027 3 - TSS region transcription start site region 130211
Tssr130212 14 118052041 to 118052063 22 - TSS region transcription start site region 130212
Tssr4522 14 118052088 to 118052097 9 - TSS region transcription start site region 4522
Tssr130213 14 118052145 to 118052154 9 - TSS region transcription start site region 130213
Tssr130214 14 118052235 to 118052253 18 - TSS region transcription start site region 130214
1700008A07Rik 14 118088569 to 118089272 703 unclassified gene RIKEN cDNA 1700008A07 gene
Cpgi6844 14 118088896 to 118089973 1077 CpG island CpG island 6844
n-TFgaa5 14 118089525 to 118089597 72 - tRNA gene nuclear encoded tRNA pheylalanine 5 (anticodon GAA)
Tssr127165 14 118089674 to 118089702 28 + TSS region transcription start site region 127165
Gm31633 14 118090783 to 118095154 4371 + lncRNA gene predicted gene, 31633
2700005E23Rik 14 118091132 to 118091776 644 unclassified gene RIKEN cDNA 2700005E23 gene
Tssr127166 14 118098455 to 118098460 5 + TSS region transcription start site region 127166
Gm26773 14 118107831 to 118117100 9269 + lincRNA gene predicted gene, 26773
Tssr130215 14 118108588 to 118108594 6 - TSS region transcription start site region 130215
Tgds 14 118111911 to 118132755 20844 - protein coding gene TDP-glucose 4,6-dehydratase
Cpgi6845 14 118132540 to 118132935 395 CpG island CpG island 6845
Tssr130216 14 118132733 to 118132761 28 - TSS region transcription start site region 130216
Tssr130217 14 118132763 to 118132774 11 - TSS region transcription start site region 130217
Cpgi6846 14 118136458 to 118137672 1214 CpG island CpG island 6846
Tssr127167 14 118137101 to 118137178 77 + TSS region transcription start site region 127167
Gpr180 14 118137158 to 118163261 26103 + protein coding gene G protein-coupled receptor 180
Cpgi6847 14 118175092 to 118175550 458 CpG island CpG island 6847
Cpgi6848 14 118180417 to 118180576 159 CpG island CpG island 6848
Gm4674 14 118181507 to 118182129 622 - pseudogene predicted gene 4674
4933431J24Rik 14 118209378 to 118213145 3767 + lincRNA gene RIKEN cDNA 4933431J24 gene
Gm31981 14 118210421 to 118211529 1108 - lncRNA gene predicted gene, 31981
Tssr130218 14 118211670 to 118211679 9 - TSS region transcription start site region 130218
Tssr127168 14 118212339 to 118212350 11 + TSS region transcription start site region 127168
Gm32045 14 118222761 to 118226364 3603 - lncRNA gene predicted gene, 32045
Tssr130219 14 118223897 to 118223947 50 - TSS region transcription start site region 130219
Cpgi6849 14 118225615 to 118226282 667 CpG island CpG island 6849
Cpgi6850 14 118231128 to 118231735 607 CpG island CpG island 6850
Sox21 14 118233233 to 118237030 3797 - protein coding gene SRY (sex determining region Y)-box 21
Cpgi6851 14 118234247 to 118237450 3203 CpG island CpG island 6851
Tssr130220 14 118236118 to 118236145 27 - TSS region transcription start site region 130220
Tssr130221 14 118236216 to 118236242 26 - TSS region transcription start site region 130221
Gm4675 14 118236232 to 118261199 24967 + lincRNA gene predicted gene 4675
Tssr130222 14 118236638 to 118236663 25 - TSS region transcription start site region 130222