Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:105423044-106623079

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5430440P10Rik 14 105427559 to 105437716 10157 + lincRNA gene RIKEN cDNA 5430440P10 gene
4930449E01Rik 14 105498788 to 105505629 6841 + lncRNA gene RIKEN cDNA 4930449E01 gene
Tssr127089 14 105499818 to 105499853 35 + TSS region transcription start site region 127089
Tssr127090 14 105499999 to 105500046 47 + TSS region transcription start site region 127090
4930428F12Rik 14 105513195 to 105514793 1598 unclassified gene RIKEN cDNA 4930428F12 gene
Gm35909 14 105518096 to 105523485 5389 + lincRNA gene predicted gene, 35909
Tssr127091 14 105589506 to 105589531 25 + TSS region transcription start site region 127091
Tssr127092 14 105589532 to 105589546 14 + TSS region transcription start site region 127092
9330188P03Rik 14 105589549 to 105593929 4380 + lncRNA gene RIKEN cDNA 9330188P03 gene
Tssr127093 14 105589567 to 105589578 11 + TSS region transcription start site region 127093
Tssr127094 14 105589616 to 105589623 7 + TSS region transcription start site region 127094
Gm6145 14 105621015 to 105643725 22710 - unclassified non-coding RNA gene predicted gene 6145
Mir6390 14 105623642 to 105623770 128 - miRNA gene microRNA 6390
Tssr130157 14 105642030 to 105642068 38 - TSS region transcription start site region 130157
Tssr130158 14 105643665 to 105643687 22 - TSS region transcription start site region 130158
Tssr130159 14 105643690 to 105643712 22 - TSS region transcription start site region 130159
Tssr127095 14 105681824 to 105681831 7 + TSS region transcription start site region 127095
Gm10076 14 105681828 to 105682211 383 + pseudogene predicted gene 10076
Tssr127096 14 105681973 to 105681992 19 + TSS region transcription start site region 127096
Gm35967 14 105683351 to 105728364 45013 - lncRNA gene predicted gene, 35967
D14Mit167 14 105815181 to 105815311 130 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 167
Gm22406 14 105816908 to 105817000 92 + miRNA gene predicted gene, 22406
Gm41239 14 105822646 to 105829650 7004 + lncRNA gene predicted gene, 41239
Gm48970 14 105853073 to 105862501 9428 - lincRNA gene predicted gene, 48970
Tssr130160 14 105859180 to 105859191 11 - TSS region transcription start site region 130160
Spry2 14 105891947 to 105896819 4872 - protein coding gene sprouty RTK signaling antagonist 2
Tssr130161 14 105892592 to 105892596 4 - TSS region transcription start site region 130161
Tssr130162 14 105892827 to 105892848 21 - TSS region transcription start site region 130162
Cpgi6829 14 105893251 to 105893511 260 CpG island CpG island 6829
Cpgi6830 14 105894918 to 105895382 464 CpG island CpG island 6830
Cpgi6831 14 105895952 to 105898008 2056 CpG island CpG island 6831
Tssr127097 14 105896122 to 105896134 12 + TSS region transcription start site region 127097
Tssr130163 14 105897116 to 105897132 16 - TSS region transcription start site region 130163
Tssr130164 14 105897310 to 105897358 48 - TSS region transcription start site region 130164
Tssr127098 14 105897390 to 105897449 59 + TSS region transcription start site region 127098
Tssr127099 14 105897484 to 105897496 12 + TSS region transcription start site region 127099
Tssr130165 14 105897717 to 105897728 11 - TSS region transcription start site region 130165
Tssr130166 14 105897732 to 105897778 46 - TSS region transcription start site region 130166
Tssr127100 14 105897920 to 105897938 18 + TSS region transcription start site region 127100
Cpgi6832 14 105898486 to 105899325 839 CpG island CpG island 6832
Tssr127101 14 105921741 to 105921743 2 + TSS region transcription start site region 127101
Tssr130167 14 105922600 to 105922609 9 - TSS region transcription start site region 130167
Tssr127102 14 106023044 to 106023079 35 + TSS region transcription start site region 127102
Frg2f4 14 106093234 to 106093482 248 - protein coding gene FSHD region gene 2 family member 4
Gm4775 14 106100765 to 106101166 401 - pseudogene predicted gene 4775
Tssr130168 14 106101180 to 106101189 9 - TSS region transcription start site region 130168
Cpgi6833 14 106106083 to 106106843 760 CpG island CpG island 6833
Tssr127103 14 106106183 to 106106205 22 + TSS region transcription start site region 127103
Trim52 14 106106198 to 106135859 29661 + protein coding gene tripartite motif-containing 52
Tssr127104 14 106106220 to 106106228 8 + TSS region transcription start site region 127104
Cpgi6834 14 106107297 to 106107523 226 CpG island CpG island 6834
Tssr127105 14 106120906 to 106120912 6 + TSS region transcription start site region 127105
Tssr4514 14 106191004 to 106191005 1 + TSS region transcription start site region 4514
Tssr127106 14 106194336 to 106194345 9 + TSS region transcription start site region 127106
Gm48971 14 106211777 to 106211978 201 - pseudogene predicted gene, 48971
Tssr4515 14 106217846 to 106217862 16 + TSS region transcription start site region 4515
Gm48972 14 106241684 to 106267934 26250 - lincRNA gene predicted gene, 48972
Gm23459 14 106261123 to 106261253 130 - snRNA gene predicted gene, 23459
Tssr130169 14 106261250 to 106261254 4 - TSS region transcription start site region 130169
Gm36107 14 106265292 to 106271248 5956 + lincRNA gene predicted gene, 36107
D14Mit170 14 106265795 to 106265938 143 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 170
Tssr130170 14 106267752 to 106267757 5 - TSS region transcription start site region 130170
Tssr4516 14 106274761 to 106274769 8 + TSS region transcription start site region 4516
Gm4463 14 106357092 to 106357805 713 + pseudogene predicted gene 4463
Gm41240 14 106364017 to 106396768 32751 + lncRNA gene predicted gene, 41240
1700128A07Rik 14 106417187 to 106486520 69333 - lincRNA gene RIKEN cDNA 1700128A07 gene
Frg2f11 14 106446946 to 106448006 1060 + protein coding gene FSHD region gene 2 family member 11
Frg2f5 14 106450304 to 106451368 1064 + protein coding gene FSHD region gene 2 family member 5
Frg2f6 14 106457845 to 106458833 988 + protein coding gene FSHD region gene 2 family member 6
Frg2f7 14 106461451 to 106462515 1064 + protein coding gene FSHD region gene 2 family member 7
Frg2f9 14 106464822 to 106465870 1048 + protein coding gene FSHD region gene 2 family member 9
Frg2f2 14 106467686 to 106469232 1546 + protein coding gene FSHD region gene 2 family member 2
Frg2f12 14 106471048 to 106472306 1258 + protein coding gene FSHD region gene 2 family member 12
Frg2f10 14 106474462 to 106475934 1472 + protein coding gene FSHD region gene 2 family member 10
Frg2f13 14 106477828 to 106479300 1472 + protein coding gene FSHD region gene 2 family member 13
Frg2f3 14 106481628 to 106482527 899 + protein coding gene FSHD region gene 2 family member 3
Tssr130171 14 106486488 to 106486513 25 - TSS region transcription start site region 130171
Tssr130172 14 106486515 to 106486528 13 - TSS region transcription start site region 130172
Gm29871 14 106487086 to 106521824 34738 + lncRNA gene predicted gene, 29871
Gm24634 14 106517389 to 106517495 106 - snoRNA gene predicted gene, 24634
Gm48973 14 106555862 to 106556243 381 - pseudogene predicted gene, 48973
Gm41241 14 106559088 to 106570566 11478 + lncRNA gene predicted gene, 41241
Gm48974 14 106619588 to 106620359 771 - pseudogene predicted gene, 48974