Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:104441751-105842327

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D130079A08Rik 14 104288431 to 104459336 170905 - lincRNA gene RIKEN cDNA D130079A08 gene
Gm35362 14 104445370 to 104456277 10907 + lncRNA gene predicted gene, 35362
Tssr130142 14 104459333 to 104459337 4 - TSS region transcription start site region 130142
Tssr130143 14 104459483 to 104459486 3 - TSS region transcription start site region 130143
Cpgi6820 14 104460488 to 104460836 348 CpG island CpG island 6820
Cpgi6821 14 104460954 to 104461167 213 CpG island CpG island 6821
Pou4f1 14 104461676 to 104467999 6323 - protein coding gene POU domain, class 4, transcription factor 1
Tssr130144 14 104464656 to 104464662 6 - TSS region transcription start site region 130144
Cpgi6822 14 104465361 to 104468675 3314 CpG island CpG island 6822
Tssr130145 14 104467984 to 104468041 57 - TSS region transcription start site region 130145
Gm35623 14 104468198 to 104477234 9036 + lncRNA gene predicted gene, 35623
Cpgi6823 14 104472908 to 104473515 607 CpG island CpG island 6823
Cpgi6824 14 104473778 to 104474197 419 CpG island CpG island 6824
Rnf219 14 104477536 to 104522645 45109 - protein coding gene ring finger protein 219
Gm49205 14 104481491 to 104482283 792 + pseudogene predicted gene, 49205
Tssr130146 14 104521802 to 104521806 4 - TSS region transcription start site region 130146
Cpgi6825 14 104522044 to 104522841 797 CpG island CpG island 6825
Tssr130147 14 104522615 to 104522707 92 - TSS region transcription start site region 130147
Gm22021 14 104591094 to 104591200 106 + snRNA gene predicted gene, 22021
Gm35680 14 104600549 to 104607850 7301 + lncRNA gene predicted gene, 35680
Gm25724 14 104628944 to 104629060 116 - snoRNA gene predicted gene, 25724
D130009I18Rik 14 104639144 to 104966783 327639 + lincRNA gene RIKEN cDNA D130009I18 gene
Cpgi6826 14 104796497 to 104796683 186 CpG island CpG island 6826
Gm24280 14 104971427 to 104971560 133 + snoRNA gene predicted gene, 24280
Tssr127078 14 105043412 to 105043428 16 + TSS region transcription start site region 127078
Gm5671 14 105043450 to 105044354 904 + pseudogene predicted gene 5671
D14Mit205 14 105054651 to 105054760 109 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 205
Gm17066 14 105109390 to 105114676 5286 - lncRNA gene predicted gene 17066
Rbm26 14 105114519 to 105177327 62808 - protein coding gene RNA binding motif protein 26
Tssr130148 14 105114620 to 105114754 134 - TSS region transcription start site region 130148
Tssr130149 14 105115310 to 105115324 14 - TSS region transcription start site region 130149
Tssr130150 14 105116964 to 105116966 2 - TSS region transcription start site region 130150
Tssr130151 14 105138375 to 105138383 8 - TSS region transcription start site region 130151
Tssr130152 14 105138997 to 105139002 5 - TSS region transcription start site region 130152
8430411E10Rik 14 105167777 to 105168075 298 unclassified gene RIKEN cDNA 8430411E10 gene
Cpgi6827 14 105176395 to 105177702 1307 CpG island CpG island 6827
Tssr130153 14 105176872 to 105176918 46 - TSS region transcription start site region 130153
Tssr130154 14 105177253 to 105177261 8 - TSS region transcription start site region 130154
Tssr130155 14 105177263 to 105177277 14 - TSS region transcription start site region 130155
Tssr130156 14 105177280 to 105177334 54 - TSS region transcription start site region 130156
Tssr127079 14 105177357 to 105177405 48 + TSS region transcription start site region 127079
Gm48937 14 105184024 to 105184385 361 - pseudogene predicted gene, 48937
Gm6201 14 105199326 to 105201099 1773 - pseudogene predicted gene 6201
9330172E22Rik 14 105227101 to 105259281 32180 unclassified gene RIKEN cDNA 9330172E22 gene
Gm22290 14 105250010 to 105250116 106 + snRNA gene predicted gene, 22290
Cpgi6828 14 105258312 to 105259325 1013 CpG island CpG island 6828
Ndfip2 14 105258585 to 105309298 50713 + protein coding gene Nedd4 family interacting protein 2
Tssr127080 14 105258612 to 105258629 17 + TSS region transcription start site region 127080
Tssr127081 14 105258686 to 105258697 11 + TSS region transcription start site region 127081
Tssr127082 14 105258712 to 105258758 46 + TSS region transcription start site region 127082
Tssr127083 14 105258764 to 105258781 17 + TSS region transcription start site region 127083
Tssr127084 14 105258798 to 105258816 18 + TSS region transcription start site region 127084
Tssr127085 14 105258821 to 105258834 13 + TSS region transcription start site region 127085
Tssr127086 14 105258835 to 105258845 10 + TSS region transcription start site region 127086
Tssr127087 14 105258849 to 105258890 41 + TSS region transcription start site region 127087
Gm24207 14 105276879 to 105276986 107 - snRNA gene predicted gene, 24207
Gm16259 14 105292432 to 105292984 552 - pseudogene predicted gene 16259
D14Mit197 14 105317404 to 105317504 100 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 197
Tssr127088 14 105339876 to 105339887 11 + TSS region transcription start site region 127088
5430440P10Rik 14 105427559 to 105437716 10157 + lincRNA gene RIKEN cDNA 5430440P10 gene
4930449E01Rik 14 105498788 to 105505629 6841 + lncRNA gene RIKEN cDNA 4930449E01 gene
Tssr127089 14 105499818 to 105499853 35 + TSS region transcription start site region 127089
Tssr127090 14 105499999 to 105500046 47 + TSS region transcription start site region 127090
4930428F12Rik 14 105513195 to 105514793 1598 unclassified gene RIKEN cDNA 4930428F12 gene
Gm35909 14 105518096 to 105523485 5389 + lincRNA gene predicted gene, 35909
Tssr127091 14 105589506 to 105589531 25 + TSS region transcription start site region 127091
Tssr127092 14 105589532 to 105589546 14 + TSS region transcription start site region 127092
9330188P03Rik 14 105589549 to 105593929 4380 + lncRNA gene RIKEN cDNA 9330188P03 gene
Tssr127093 14 105589567 to 105589578 11 + TSS region transcription start site region 127093
Tssr127094 14 105589616 to 105589623 7 + TSS region transcription start site region 127094
Gm6145 14 105621015 to 105643725 22710 - unclassified non-coding RNA gene predicted gene 6145
Mir6390 14 105623642 to 105623770 128 - miRNA gene microRNA 6390
Tssr130157 14 105642030 to 105642068 38 - TSS region transcription start site region 130157
Tssr130158 14 105643665 to 105643687 22 - TSS region transcription start site region 130158
Tssr130159 14 105643690 to 105643712 22 - TSS region transcription start site region 130159
Tssr127095 14 105681824 to 105681831 7 + TSS region transcription start site region 127095
Gm10076 14 105681828 to 105682211 383 + pseudogene predicted gene 10076
Tssr127096 14 105681973 to 105681992 19 + TSS region transcription start site region 127096
Gm35967 14 105683351 to 105728364 45013 - lncRNA gene predicted gene, 35967
D14Mit167 14 105815181 to 105815311 130 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 167
Gm22406 14 105816908 to 105817000 92 + miRNA gene predicted gene, 22406
Gm41239 14 105822646 to 105829650 7004 + lncRNA gene predicted gene, 41239