Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:103239999-107760046

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221 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mycbp2 14 103113411 to 103346800 233389 - protein coding gene MYC binding protein 2, E3 ubiquitin protein ligase
Cpgi6814 14 103345901 to 103347223 1322 CpG island CpG island 6814
Tssr130111 14 103346349 to 103346365 16 - TSS region transcription start site region 130111
Tssr127062 14 103346574 to 103346596 22 + TSS region transcription start site region 127062
Tssr130112 14 103346639 to 103346661 22 - TSS region transcription start site region 130112
Tssr130113 14 103346723 to 103346734 11 - TSS region transcription start site region 130113
Tssr130114 14 103346745 to 103346756 11 - TSS region transcription start site region 130114
Tssr130115 14 103346765 to 103346841 76 - TSS region transcription start site region 130115
Tssr127063 14 103346874 to 103346946 72 + TSS region transcription start site region 127063
Tssr127064 14 103347063 to 103347081 18 + TSS region transcription start site region 127064
Cpgi6815 14 103349544 to 103350286 742 CpG island CpG island 6815
Gm4654 14 103370465 to 103371446 981 - pseudogene predicted gene 4654
1700087I21Rik 14 103424905 to 103449867 24962 + lincRNA gene RIKEN cDNA 1700087I21 gene
Tssr127065 14 103438677 to 103438683 6 + TSS region transcription start site region 127065
Gm34907 14 103463924 to 103512619 48695 + lincRNA gene predicted gene, 34907
Tssr4513 14 103464382 to 103464407 25 + TSS region transcription start site region 4513
Tssr127066 14 103513304 to 103513324 20 + TSS region transcription start site region 127066
Tssr127067 14 103513328 to 103513377 49 + TSS region transcription start site region 127067
Scel 14 103513342 to 103612797 99455 + protein coding gene sciellin
Tssr127068 14 103513378 to 103513429 51 + TSS region transcription start site region 127068
Tssr127069 14 103513438 to 103513443 5 + TSS region transcription start site region 127069
Cpgi6816 14 103649885 to 103651339 1454 CpG island CpG island 6816
Tssr127070 14 103650208 to 103650243 35 + TSS region transcription start site region 127070
Slain1 14 103650228 to 103704907 54679 + protein coding gene SLAIN motif family, member 1
Tssr127071 14 103650250 to 103650257 7 + TSS region transcription start site region 127071
Gm22877 14 103650453 to 103650557 104 - miRNA gene predicted gene, 22877
Tssr130116 14 103651375 to 103651384 9 - TSS region transcription start site region 130116
Cpgi6817 14 103684358 to 103684703 345 CpG island CpG island 6817
Slain1os 14 103692983 to 103699432 6449 - antisense lncRNA gene SLAIN motif family, member 1, opposite strand
Tssr127072 14 103699512 to 103699523 11 + TSS region transcription start site region 127072
Cpgi6818 14 103702520 to 103702826 306 CpG island CpG island 6818
Gm35197 14 103719026 to 103867713 148687 + lncRNA gene predicted gene, 35197
Tssr127073 14 103719856 to 103719877 21 + TSS region transcription start site region 127073
2700054A04Rik 14 103776620 to 103777483 863 unclassified gene RIKEN cDNA 2700054A04 gene
Gm35116 14 103778919 to 103784419 5500 + lncRNA gene predicted gene, 35116
Ednrb 14 103814625 to 103844402 29777 - protein coding gene endothelin receptor type B
Tssr130117 14 103815750 to 103815763 13 - TSS region transcription start site region 130117
Tssr130118 14 103815867 to 103815872 5 - TSS region transcription start site region 130118
Tssr127074 14 103827200 to 103827209 9 + TSS region transcription start site region 127074
Cpgi6819 14 103843005 to 103844416 1411 CpG island CpG island 6819
Tssr130119 14 103843058 to 103843072 14 - TSS region transcription start site region 130119
Tssr130120 14 103843138 to 103843155 17 - TSS region transcription start site region 130120
Tssr130121 14 103843473 to 103843484 11 - TSS region transcription start site region 130121
Tssr130122 14 103843540 to 103843551 11 - TSS region transcription start site region 130122
Tssr130123 14 103843594 to 103843601 7 - TSS region transcription start site region 130123
Tssr130124 14 103843626 to 103843633 7 - TSS region transcription start site region 130124
Tssr130125 14 103843685 to 103843703 18 - TSS region transcription start site region 130125
Tssr130126 14 103843710 to 103843715 5 - TSS region transcription start site region 130126
Tssr130127 14 103843821 to 103843828 7 - TSS region transcription start site region 130127
Tssr130128 14 103844166 to 103844179 13 - TSS region transcription start site region 130128
Tssr130129 14 103844187 to 103844198 11 - TSS region transcription start site region 130129
Tssr130130 14 103844208 to 103844221 13 - TSS region transcription start site region 130130
Tssr130131 14 103844235 to 103844238 3 - TSS region transcription start site region 130131
Tssr130132 14 103844246 to 103844267 21 - TSS region transcription start site region 130132
Tssr130133 14 103844268 to 103844298 30 - TSS region transcription start site region 130133
Tssr130134 14 103844300 to 103844305 5 - TSS region transcription start site region 130134
Tssr130135 14 103844314 to 103844340 26 - TSS region transcription start site region 130135
Tssr130136 14 103844344 to 103844359 15 - TSS region transcription start site region 130136
Tssr130137 14 103844391 to 103844403 12 - TSS region transcription start site region 130137
Tssr130138 14 103844420 to 103844432 12 - TSS region transcription start site region 130138
Tssr130139 14 103844448 to 103844464 16 - TSS region transcription start site region 130139
4930518C04Rik 14 103898761 to 103900644 1883 + lncRNA gene RIKEN cDNA 4930518C04 gene
Tssr127075 14 103899479 to 103899488 9 + TSS region transcription start site region 127075
Gm37910 14 103948096 to 103949811 1715 + unclassified gene predicted gene, 37910
4930432J09Rik 14 103977628 to 104027142 49514 - lincRNA gene RIKEN cDNA 4930432J09 gene
Tssr130140 14 103998251 to 103998260 9 - TSS region transcription start site region 130140
Tssr130141 14 103998273 to 103998284 11 - TSS region transcription start site region 130141
Gm41238 14 104007205 to 104039607 32402 + lncRNA gene predicted gene, 41238
Gm41237 14 104032324 to 104034925 2601 - lncRNA gene predicted gene, 41237
D14Mit94 14 104096972 to 104097072 100 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 94
Tssr127076 14 104129058 to 104129059 1 + TSS region transcription start site region 127076
Gm35308 14 104151377 to 104153369 1992 + lncRNA gene predicted gene, 35308
Tssr127077 14 104190988 to 104191008 20 + TSS region transcription start site region 127077
D130079A08Rik 14 104288431 to 104459336 170905 - lincRNA gene RIKEN cDNA D130079A08 gene
Gm35362 14 104445370 to 104456277 10907 + lncRNA gene predicted gene, 35362
Tssr130142 14 104459333 to 104459337 4 - TSS region transcription start site region 130142
Tssr130143 14 104459483 to 104459486 3 - TSS region transcription start site region 130143
Cpgi6820 14 104460488 to 104460836 348 CpG island CpG island 6820
Cpgi6821 14 104460954 to 104461167 213 CpG island CpG island 6821
Pou4f1 14 104461676 to 104467999 6323 - protein coding gene POU domain, class 4, transcription factor 1
Tssr130144 14 104464656 to 104464662 6 - TSS region transcription start site region 130144
Cpgi6822 14 104465361 to 104468675 3314 CpG island CpG island 6822
Tssr130145 14 104467984 to 104468041 57 - TSS region transcription start site region 130145
Gm35623 14 104468198 to 104477234 9036 + lncRNA gene predicted gene, 35623
Cpgi6823 14 104472908 to 104473515 607 CpG island CpG island 6823
Cpgi6824 14 104473778 to 104474197 419 CpG island CpG island 6824
Rnf219 14 104477536 to 104522645 45109 - protein coding gene ring finger protein 219
Gm49205 14 104481491 to 104482283 792 + pseudogene predicted gene, 49205
Tssr130146 14 104521802 to 104521806 4 - TSS region transcription start site region 130146
Cpgi6825 14 104522044 to 104522841 797 CpG island CpG island 6825
Tssr130147 14 104522615 to 104522707 92 - TSS region transcription start site region 130147
Gm22021 14 104591094 to 104591200 106 + snRNA gene predicted gene, 22021
Gm35680 14 104600549 to 104607850 7301 + lncRNA gene predicted gene, 35680
Gm25724 14 104628944 to 104629060 116 - snoRNA gene predicted gene, 25724
D130009I18Rik 14 104639144 to 104966783 327639 + lincRNA gene RIKEN cDNA D130009I18 gene
Cpgi6826 14 104796497 to 104796683 186 CpG island CpG island 6826
Gm24280 14 104971427 to 104971560 133 + snoRNA gene predicted gene, 24280
Tssr127078 14 105043412 to 105043428 16 + TSS region transcription start site region 127078
Gm5671 14 105043450 to 105044354 904 + pseudogene predicted gene 5671
D14Mit205 14 105054651 to 105054760 109 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 205
Gm17066 14 105109390 to 105114676 5286 - lncRNA gene predicted gene 17066
Rbm26 14 105114519 to 105177327 62808 - protein coding gene RNA binding motif protein 26
Tssr130148 14 105114620 to 105114754 134 - TSS region transcription start site region 130148
Tssr130149 14 105115310 to 105115324 14 - TSS region transcription start site region 130149
Tssr130150 14 105116964 to 105116966 2 - TSS region transcription start site region 130150
Tssr130151 14 105138375 to 105138383 8 - TSS region transcription start site region 130151
Tssr130152 14 105138997 to 105139002 5 - TSS region transcription start site region 130152
8430411E10Rik 14 105167777 to 105168075 298 unclassified gene RIKEN cDNA 8430411E10 gene
Cpgi6827 14 105176395 to 105177702 1307 CpG island CpG island 6827
Tssr130153 14 105176872 to 105176918 46 - TSS region transcription start site region 130153
Tssr130154 14 105177253 to 105177261 8 - TSS region transcription start site region 130154
Tssr130155 14 105177263 to 105177277 14 - TSS region transcription start site region 130155
Tssr130156 14 105177280 to 105177334 54 - TSS region transcription start site region 130156
Tssr127079 14 105177357 to 105177405 48 + TSS region transcription start site region 127079
Gm48937 14 105184024 to 105184385 361 - pseudogene predicted gene, 48937
Gm6201 14 105199326 to 105201099 1773 - pseudogene predicted gene 6201
9330172E22Rik 14 105227101 to 105259281 32180 unclassified gene RIKEN cDNA 9330172E22 gene
Gm22290 14 105250010 to 105250116 106 + snRNA gene predicted gene, 22290
Cpgi6828 14 105258312 to 105259325 1013 CpG island CpG island 6828
Ndfip2 14 105258585 to 105309298 50713 + protein coding gene Nedd4 family interacting protein 2
Tssr127080 14 105258612 to 105258629 17 + TSS region transcription start site region 127080
Tssr127081 14 105258686 to 105258697 11 + TSS region transcription start site region 127081
Tssr127082 14 105258712 to 105258758 46 + TSS region transcription start site region 127082
Tssr127083 14 105258764 to 105258781 17 + TSS region transcription start site region 127083
Tssr127084 14 105258798 to 105258816 18 + TSS region transcription start site region 127084
Tssr127085 14 105258821 to 105258834 13 + TSS region transcription start site region 127085
Tssr127086 14 105258835 to 105258845 10 + TSS region transcription start site region 127086
Tssr127087 14 105258849 to 105258890 41 + TSS region transcription start site region 127087
Gm24207 14 105276879 to 105276986 107 - snRNA gene predicted gene, 24207
Gm16259 14 105292432 to 105292984 552 - pseudogene predicted gene 16259
D14Mit197 14 105317404 to 105317504 100 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 197
Tssr127088 14 105339876 to 105339887 11 + TSS region transcription start site region 127088
5430440P10Rik 14 105427559 to 105437716 10157 + lincRNA gene RIKEN cDNA 5430440P10 gene
4930449E01Rik 14 105498788 to 105505629 6841 + lncRNA gene RIKEN cDNA 4930449E01 gene
Tssr127089 14 105499818 to 105499853 35 + TSS region transcription start site region 127089
Tssr127090 14 105499999 to 105500046 47 + TSS region transcription start site region 127090
4930428F12Rik 14 105513195 to 105514793 1598 unclassified gene RIKEN cDNA 4930428F12 gene
Gm35909 14 105518096 to 105523485 5389 + lincRNA gene predicted gene, 35909
Tssr127091 14 105589506 to 105589531 25 + TSS region transcription start site region 127091
Tssr127092 14 105589532 to 105589546 14 + TSS region transcription start site region 127092
9330188P03Rik 14 105589549 to 105593929 4380 + lncRNA gene RIKEN cDNA 9330188P03 gene
Tssr127093 14 105589567 to 105589578 11 + TSS region transcription start site region 127093
Tssr127094 14 105589616 to 105589623 7 + TSS region transcription start site region 127094
Gm6145 14 105621015 to 105643725 22710 - unclassified non-coding RNA gene predicted gene 6145
Mir6390 14 105623642 to 105623770 128 - miRNA gene microRNA 6390
Tssr130157 14 105642030 to 105642068 38 - TSS region transcription start site region 130157
Tssr130158 14 105643665 to 105643687 22 - TSS region transcription start site region 130158
Tssr130159 14 105643690 to 105643712 22 - TSS region transcription start site region 130159
Tssr127095 14 105681824 to 105681831 7 + TSS region transcription start site region 127095
Gm10076 14 105681828 to 105682211 383 + pseudogene predicted gene 10076
Tssr127096 14 105681973 to 105681992 19 + TSS region transcription start site region 127096
Gm35967 14 105683351 to 105728364 45013 - lncRNA gene predicted gene, 35967
D14Mit167 14 105815181 to 105815311 130 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 167
Gm22406 14 105816908 to 105817000 92 + miRNA gene predicted gene, 22406
Gm41239 14 105822646 to 105829650 7004 + lncRNA gene predicted gene, 41239
Gm48970 14 105853073 to 105862501 9428 - lincRNA gene predicted gene, 48970
Tssr130160 14 105859180 to 105859191 11 - TSS region transcription start site region 130160
Spry2 14 105891947 to 105896819 4872 - protein coding gene sprouty RTK signaling antagonist 2
Tssr130161 14 105892592 to 105892596 4 - TSS region transcription start site region 130161
Tssr130162 14 105892827 to 105892848 21 - TSS region transcription start site region 130162
Cpgi6829 14 105893251 to 105893511 260 CpG island CpG island 6829
Cpgi6830 14 105894918 to 105895382 464 CpG island CpG island 6830
Cpgi6831 14 105895952 to 105898008 2056 CpG island CpG island 6831
Tssr127097 14 105896122 to 105896134 12 + TSS region transcription start site region 127097
Tssr130163 14 105897116 to 105897132 16 - TSS region transcription start site region 130163
Tssr130164 14 105897310 to 105897358 48 - TSS region transcription start site region 130164
Tssr127098 14 105897390 to 105897449 59 + TSS region transcription start site region 127098
Tssr127099 14 105897484 to 105897496 12 + TSS region transcription start site region 127099
Tssr130165 14 105897717 to 105897728 11 - TSS region transcription start site region 130165
Tssr130166 14 105897732 to 105897778 46 - TSS region transcription start site region 130166
Tssr127100 14 105897920 to 105897938 18 + TSS region transcription start site region 127100
Cpgi6832 14 105898486 to 105899325 839 CpG island CpG island 6832
Tssr127101 14 105921741 to 105921743 2 + TSS region transcription start site region 127101
Tssr130167 14 105922600 to 105922609 9 - TSS region transcription start site region 130167
Tssr127102 14 106023044 to 106023079 35 + TSS region transcription start site region 127102
Frg2f4 14 106093234 to 106093482 248 - protein coding gene FSHD region gene 2 family member 4
Gm4775 14 106100765 to 106101166 401 - pseudogene predicted gene 4775
Tssr130168 14 106101180 to 106101189 9 - TSS region transcription start site region 130168
Cpgi6833 14 106106083 to 106106843 760 CpG island CpG island 6833
Tssr127103 14 106106183 to 106106205 22 + TSS region transcription start site region 127103
Trim52 14 106106198 to 106135859 29661 + protein coding gene tripartite motif-containing 52
Tssr127104 14 106106220 to 106106228 8 + TSS region transcription start site region 127104
Cpgi6834 14 106107297 to 106107523 226 CpG island CpG island 6834
Tssr127105 14 106120906 to 106120912 6 + TSS region transcription start site region 127105
Tssr4514 14 106191004 to 106191005 1 + TSS region transcription start site region 4514
Tssr127106 14 106194336 to 106194345 9 + TSS region transcription start site region 127106
Gm48971 14 106211777 to 106211978 201 - pseudogene predicted gene, 48971
Tssr4515 14 106217846 to 106217862 16 + TSS region transcription start site region 4515
Gm48972 14 106241684 to 106267934 26250 - lincRNA gene predicted gene, 48972
Gm23459 14 106261123 to 106261253 130 - snRNA gene predicted gene, 23459
Tssr130169 14 106261250 to 106261254 4 - TSS region transcription start site region 130169
Gm36107 14 106265292 to 106271248 5956 + lincRNA gene predicted gene, 36107
D14Mit170 14 106265795 to 106265938 143 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 170
Tssr130170 14 106267752 to 106267757 5 - TSS region transcription start site region 130170
Tssr4516 14 106274761 to 106274769 8 + TSS region transcription start site region 4516
Gm4463 14 106357092 to 106357805 713 + pseudogene predicted gene 4463
Gm41240 14 106364017 to 106396768 32751 + lncRNA gene predicted gene, 41240
1700128A07Rik 14 106417187 to 106486520 69333 - lincRNA gene RIKEN cDNA 1700128A07 gene
Frg2f11 14 106446946 to 106448006 1060 + protein coding gene FSHD region gene 2 family member 11
Frg2f5 14 106450304 to 106451368 1064 + protein coding gene FSHD region gene 2 family member 5