Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:99452550-100763582

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map1b 13 99421446 to 99516540 95094 - protein coding gene microtubule-associated protein 1B
Tssr123755 13 99470327 to 99470376 49 - TSS region transcription start site region 123755
5330431K02Rik 13 99502477 to 99504439 1962 - unclassified gene RIKEN cDNA 5330431K02 gene
Tssr123756 13 99513615 to 99513619 4 - TSS region transcription start site region 123756
Cpgi6023 13 99514875 to 99515541 666 CpG island CpG island 6023
Cpgi6024 13 99515860 to 99516914 1054 CpG island CpG island 6024
Tssr123757 13 99516512 to 99516523 11 - TSS region transcription start site region 123757
Tssr123758 13 99516537 to 99516579 42 - TSS region transcription start site region 123758
Gm26559 13 99516629 to 99521760 5131 + bidirectional promoter lncRNA gene predicted gene, 26559
Tssr123759 13 99516666 to 99516677 11 - TSS region transcription start site region 123759
Tssr120835 13 99550940 to 99550945 5 + TSS region transcription start site region 120835
Gm47158 13 99561442 to 99561919 477 + pseudogene predicted gene, 47158
Tssr123760 13 99585664 to 99585667 3 - TSS region transcription start site region 123760
Ses10 13 99603460 to 99603598 138 QTL salmonella enteritidis susceptibility 10
D13Mit36 13 99603460 to 99603598 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 36
Cpgi6025 13 99630363 to 99630771 408 CpG island CpG island 6025
Tssr120836 13 99641951 to 99641957 6 + TSS region transcription start site region 120836
1700012J22Rik 13 99641974 to 99642803 829 + unclassified gene RIKEN cDNA 1700012J22 gene
Tssr120837 13 99641983 to 99641992 9 + TSS region transcription start site region 120837
Gm24471 13 99692399 to 99692529 130 - snoRNA gene predicted gene, 24471
Cpgi6026 13 99692983 to 99693248 265 CpG island CpG island 6026
D13Die4 13 99791448 to 99791679 231 DNA segment DNA segment, Chr 13, Dietrich 4
Tssr123761 13 99853254 to 99853258 4 - TSS region transcription start site region 123761
Cartpt 13 99898483 to 99900683 2200 - protein coding gene CART prepropeptide
Cpgi6027 13 99899934 to 99901021 1087 CpG island CpG island 6027
Tssr123762 13 99900645 to 99900669 24 - TSS region transcription start site region 123762
Tssr123763 13 99900786 to 99900789 3 - TSS region transcription start site region 123763
Gm41039 13 99933395 to 99948322 14927 - lncRNA gene predicted gene, 41039
D13Die21 13 99936248 to 99936368 120 DNA segment DNA segment, Chr 13, Dietrich 21
Tssr120838 13 99939579 to 99939613 34 + TSS region transcription start site region 120838
D13Die38 13 99960709 to 99960979 270 DNA segment DNA segment, Chr 13, Dietrich 38
D13Die8 13 99961574 to 99961741 167 DNA segment DNA segment, Chr 13, Dietrich 8
D13Die39 13 99991490 to 99991682 192 DNA segment DNA segment, Chr 13, Dietrich 39
D13Die40 13 100003624 to 100003942 318 DNA segment DNA segment, Chr 13, Dietrich 40
D13Die20 13 100003659 to 100003803 144 DNA segment DNA segment, Chr 13, Dietrich 20
Tssr123764 13 100012498 to 100012501 3 - TSS region transcription start site region 123764
D13Die5 13 100013611 to 100013736 125 DNA segment DNA segment, Chr 13, Dietrich 5
Cpgi6028 13 100015272 to 100015915 643 CpG island CpG island 6028
Tssr123765 13 100015532 to 100015543 11 - TSS region transcription start site region 123765
Tssr123766 13 100015562 to 100015647 85 - TSS region transcription start site region 123766
Mccc2 13 100015639 to 99948532 -67107 - protein coding gene methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
Bdp1 13 100017994 to 100104070 86076 - protein coding gene B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Tssr123767 13 100032174 to 100032185 11 - TSS region transcription start site region 123767
D13Die15 13 100038079 to 100038153 74 DNA segment DNA segment, Chr 13, Dietrich 15
D13Mit146 13 100046310 to 100046417 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 146
Tssr123768 13 100066010 to 100066033 23 - TSS region transcription start site region 123768
Tssr123769 13 100067916 to 100067924 8 - TSS region transcription start site region 123769
D430018B14Rik 13 100073216 to 100073741 525 unclassified gene RIKEN cDNA D430018B14 gene
D13Die41 13 100074863 to 100075064 201 DNA segment DNA segment, Chr 13, Dietrich 41
D13Die14 13 100075098 to 100075169 71 DNA segment DNA segment, Chr 13, Dietrich 14
Tssr123770 13 100078687 to 100078722 35 - TSS region transcription start site region 123770
Cpgi6029 13 100103569 to 100104181 612 CpG island CpG island 6029
Tssr123771 13 100104027 to 100104053 26 - TSS region transcription start site region 123771
Tssr123772 13 100104064 to 100104082 18 - TSS region transcription start site region 123772
Tssr123773 13 100104083 to 100104094 11 - TSS region transcription start site region 123773
Tssr120839 13 100104209 to 100104212 3 + TSS region transcription start site region 120839
D13Die11 13 100106326 to 100106389 63 DNA segment DNA segment, Chr 13, Dietrich 11
D13Die22 13 100106406 to 100106543 137 DNA segment DNA segment, Chr 13, Dietrich 22
BC001981 13 100106795 to 100108339 1544 - antisense lncRNA gene cDNA sequence BC001981
Cpgi6030 13 100107550 to 100108582 1032 CpG island CpG island 6030
Tssr120840 13 100108007 to 100108012 5 + TSS region transcription start site region 120840
Tssr120841 13 100108014 to 100108143 129 + TSS region transcription start site region 120841
Serf1 13 100108019 to 100114233 6214 + protein coding gene small EDRK-rich factor 1
Tssr120842 13 100108156 to 100108167 11 + TSS region transcription start site region 120842
Tssr123774 13 100108178 to 100108183 5 - TSS region transcription start site region 123774
Tssr123775 13 100109079 to 100109114 35 - TSS region transcription start site region 123775
D13Die13 13 100112322 to 100112522 200 DNA segment DNA segment, Chr 13, Dietrich 13
Tssr123776 13 100113996 to 100114038 42 - TSS region transcription start site region 123776
D13Die6 13 100116252 to 100116375 123 DNA segment DNA segment, Chr 13, Dietrich 6
Cpgi6031 13 100124571 to 100125378 807 CpG island CpG island 6031
Tssr120843 13 100124850 to 100124886 36 + TSS region transcription start site region 120843
Smn1 13 100124852 to 100137690 12838 + protein coding gene survival motor neuron 1
Tssr120844 13 100127929 to 100127942 13 + TSS region transcription start site region 120844
Naip2 13 100144063 to 100202092 58029 - protein coding gene NLR family, apoptosis inhibitory protein 2
Tssr123777 13 100152811 to 100152822 11 - TSS region transcription start site region 123777
D13Die26 13 100152950 to 100153117 167 DNA segment DNA segment, Chr 13, Dietrich 26
Tssr4152 13 100153127 to 100153128 1 + TSS region transcription start site region 4152
Gm18413 13 100153851 to 100154505 654 - pseudogene predicted gene, 18413
Tssr123778 13 100174433 to 100174444 11 - TSS region transcription start site region 123778
Tssr123779 13 100174566 to 100174580 14 - TSS region transcription start site region 123779
D13Die24 13 100186566 to 100186721 155 DNA segment DNA segment, Chr 13, Dietrich 24
Naip1-rs1 13 100188893 to 100189155 262 - pseudogene NLR family, apoptosis inhibitory protein 1, related sequence 1
D13Die23 13 100196582 to 100196895 313 DNA segment DNA segment, Chr 13, Dietrich 23
Tssr123780 13 100202110 to 100202128 18 - TSS region transcription start site region 123780
D13Die27 13 100204243 to 100204381 138 DNA segment DNA segment, Chr 13, Dietrich 27
Naip5 13 100211739 to 100246323 34584 - protein coding gene NLR family, apoptosis inhibitory protein 5
D13Die35a 13 100220449 to 100220628 179 DNA segment DNA segment, Chr 13, Dietrich 35a
D13Mit37a 13 100230784 to 100231020 236 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 37a
Tssr123781 13 100232408 to 100232411 3 - TSS region transcription start site region 123781
Tssr123782 13 100233335 to 100233340 5 - TSS region transcription start site region 123782
Del(13Naip1-Naip5)1Vnce 13 100246323 to 100407770 161447 chromosomal deletion deletion, Chr 13, Russell Vance 1
Tssr123783 13 100247332 to 100247343 11 - TSS region transcription start site region 123783
D13Die7a 13 100253123 to 100253255 132 DNA segment DNA segment, Chr 13, Dietrich 7a
Naip3-ps1 13 100264745 to 100278817 14072 - pseudogene NLR family, apoptosis inhibitory protein 3, pseudogene 1
D13Die36a 13 100267164 to 100267387 223 DNA segment DNA segment, Chr 13, Dietrich 36a
Naip3-ps3 13 100275197 to 100275933 736 pseudogene NLR family, apoptosis inhibitory protein 3, pseudogene 3
Naip6 13 100281121 to 100316616 35495 - protein coding gene NLR family, apoptosis inhibitory protein 6
D13Die32 13 100294346 to 100294755 409 DNA segment DNA segment, Chr 13, Dietrich 32
Tssr123784 13 100296414 to 100296418 4 - TSS region transcription start site region 123784
D13Die35b 13 100297690 to 100297959 269 DNA segment DNA segment, Chr 13, Dietrich 35b
D13Mit37b 13 100304468 to 100304707 239 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 37b
Tssr123785 13 100307022 to 100307027 5 - TSS region transcription start site region 123785
D13Die7b 13 100324165 to 100324300 135 DNA segment DNA segment, Chr 13, Dietrich 7b
Naip3 13 100340144 to 100378960 38816 - pseudogene NLR family, apoptosis inhibitory protein 3
D13Die36b 13 100345170 to 100345384 214 DNA segment DNA segment, Chr 13, Dietrich 36b
Gm18601 13 100392732 to 100394499 1767 + pseudogene predicted gene, 18601
Naip1 13 100407770 to 100452864 45094 - protein coding gene NLR family, apoptosis inhibitory protein 1
Rpl31-ps13 13 100415565 to 100415942 377 + pseudogene ribosomal protein L31, pseudogene 13
D13Die3 13 100433095 to 100433313 218 DNA segment DNA segment, Chr 13, Dietrich 3
Tssr123786 13 100437494 to 100437507 13 - TSS region transcription start site region 123786
Tssr4153 13 100448726 to 100448731 5 - TSS region transcription start site region 4153
Tssr123787 13 100452849 to 100452860 11 - TSS region transcription start site region 123787
Gtf2h2 13 100460218 to 100492579 32361 - protein coding gene general transcription factor II H, polypeptide 2
Tssr123788 13 100467210 to 100467214 4 - TSS region transcription start site region 123788
Gm48452 13 100467932 to 100468187 255 + pseudogene predicted gene, 48452
Tssr123789 13 100490116 to 100490134 18 - TSS region transcription start site region 123789
Cpgi6032 13 100492039 to 100492769 730 CpG island CpG island 6032
Tssr123790 13 100492356 to 100492388 32 - TSS region transcription start site region 123790
Tssr123791 13 100492551 to 100492601 50 - TSS region transcription start site region 123791
Ocln 13 100496507 to 100552718 56211 - protein coding gene occludin
D13Die12 13 100497340 to 100497502 162 DNA segment DNA segment, Chr 13, Dietrich 12
Tssr123792 13 100497897 to 100497899 2 - TSS region transcription start site region 123792
Tssr123793 13 100515135 to 100515139 4 - TSS region transcription start site region 123793
D13Mit203.2 13 100515747 to 100515862 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 203.2
D13Mit203 13 100515823 to 100515965 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 203
D13Die42 13 100542404 to 100542604 200 DNA segment DNA segment, Chr 13, Dietrich 42
Cpgi6033 13 100551291 to 100553040 1749 CpG island CpG island 6033
Tssr123794 13 100552442 to 100552479 37 - TSS region transcription start site region 123794
Tssr123795 13 100552598 to 100552656 58 - TSS region transcription start site region 123795
Tssr123796 13 100552666 to 100552677 11 - TSS region transcription start site region 123796
Tssr123797 13 100552704 to 100552721 17 - TSS region transcription start site region 123797
Tssr123798 13 100553167 to 100553210 43 - TSS region transcription start site region 123798
D13Die43 13 100555212 to 100555499 287 DNA segment DNA segment, Chr 13, Dietrich 43
Gm48596 13 100557426 to 100560639 3213 + lincRNA gene predicted gene, 48596
Gm8847 13 100559402 to 100560032 630 - pseudogene predicted gene 8847
D13Die44 13 100567745 to 100568022 277 DNA segment DNA segment, Chr 13, Dietrich 44
Tssr120845 13 100576291 to 100576298 7 + TSS region transcription start site region 120845
D13Die45 13 100583858 to 100584003 145 DNA segment DNA segment, Chr 13, Dietrich 45
Marveld2 13 100595957 to 100616971 21014 - protein coding gene MARVEL (membrane-associating) domain containing 2
Gm24261 13 100604359 to 100604462 103 + snRNA gene predicted gene, 24261
Cpgi6034 13 100611908 to 100612098 190 CpG island CpG island 6034
Cpgi6035 13 100616228 to 100617139 911 CpG island CpG island 6035
Tssr123799 13 100616643 to 100616655 12 - TSS region transcription start site region 123799
Tssr123800 13 100616689 to 100616711 22 - TSS region transcription start site region 123800
Tssr123801 13 100616937 to 100616981 44 - TSS region transcription start site region 123801
Rad17 13 100617164 to 100651051 33887 - protein coding gene RAD17 checkpoint clamp loader component
Cpgi6036 13 100650609 to 100652016 1407 CpG island CpG island 6036
Tssr123802 13 100650981 to 100651085 104 - TSS region transcription start site region 123802
Tssr123803 13 100651253 to 100651264 11 - TSS region transcription start site region 123803
Tssr120846 13 100651307 to 100651310 3 + TSS region transcription start site region 120846
Tssr120847 13 100651328 to 100651397 69 + TSS region transcription start site region 120847
Ak6 13 100651343 to 100666415 15072 + protein coding gene adenylate kinase 6
Taf9 13 100651579 to 100656060 4481 + protein coding gene TATA-box binding protein associated factor 9
Tssr120848 13 100651590 to 100651601 11 + TSS region transcription start site region 120848
Tssr120849 13 100651610 to 100651631 21 + TSS region transcription start site region 120849
Tssr120850 13 100655282 to 100655313 31 + TSS region transcription start site region 120850
Cpgi6037 13 100669367 to 100670078 711 CpG island CpG island 6037
Tssr120851 13 100669698 to 100669754 56 + TSS region transcription start site region 120851
Ccdc125 13 100669717 to 100697240 27523 + protein coding gene coiled-coil domain containing 125
Tssr120852 13 100676103 to 100676136 33 + TSS region transcription start site region 120852
Tssr120853 13 100676140 to 100676150 10 + TSS region transcription start site region 120853
Tssr120854 13 100686195 to 100686199 4 + TSS region transcription start site region 120854
Cdk7 13 100702631 to 100730939 28308 - protein coding gene cyclin-dependent kinase 7
Tssr123804 13 100724544 to 100724547 3 - TSS region transcription start site region 123804
Tssr123805 13 100724880 to 100724883 3 - TSS region transcription start site region 123805
Cpgi6038 13 100730146 to 100730378 232 CpG island CpG island 6038
Cpgi6039 13 100730669 to 100731109 440 CpG island CpG island 6039
Tssr123806 13 100730839 to 100730962 123 - TSS region transcription start site region 123806
Tssr120855 13 100731013 to 100731077 64 + TSS region transcription start site region 120855
Mrps36 13 100735955 to 100744659 8704 - protein coding gene mitochondrial ribosomal protein S36
Pbwg17 13 100739552 to 100739748 196 QTL postnatal body weight growth 17
D13Mit195 13 100739552 to 100739748 196 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 195
Cpgi6040 13 100744069 to 100744769 700 CpG island CpG island 6040
Tssr123807 13 100744089 to 100744129 40 - TSS region transcription start site region 123807
Tssr120856 13 100744204 to 100744240 36 + TSS region transcription start site region 120856
Tssr123808 13 100744588 to 100744663 75 - TSS region transcription start site region 123808
Cenph 13 100759686 to 100775899 16213 - protein coding gene centromere protein H
D13Ertd37e 13 100763117 to 100763364 247 DNA segment DNA segment, Chr 13, ERATO Doi 37, expressed
Sod1m 13 110563377 to 99603460 -10959917 QTL superoxide dismutase 1, soluble, modifier