Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:98800706-99407580

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fcho2 13 98723403 to 98815449 92046 - protein coding gene FCH domain only 2
D130062J10Rik 13 98798611 to 98801410 2799 - sense intronic lncRNA gene RIKEN cDNA D130062J10 gene
Gm47551 13 98801172 to 98803736 2564 + antisense lncRNA gene predicted gene, 47551
Tssr123648 13 98803785 to 98803808 23 - TSS region transcription start site region 123648
Tssr123649 13 98813298 to 98813302 4 - TSS region transcription start site region 123649
Cpgi6013 13 98814387 to 98815823 1436 CpG island CpG island 6013
Tssr123650 13 98815120 to 98815201 81 - TSS region transcription start site region 123650
Tssr123651 13 98815221 to 98815257 36 - TSS region transcription start site region 123651
Tssr123652 13 98815263 to 98815275 12 - TSS region transcription start site region 123652
Tssr123653 13 98815365 to 98815402 37 - TSS region transcription start site region 123653
Tssr123654 13 98815408 to 98815431 23 - TSS region transcription start site region 123654
Tssr123655 13 98815584 to 98815606 22 - TSS region transcription start site region 123655
Gm34995 13 98815741 to 98832137 16396 + lncRNA gene predicted gene, 34995
Tssr120816 13 98816722 to 98816738 16 + TSS region transcription start site region 120816
Gm18134 13 98816752 to 98817265 513 + pseudogene predicted gene, 18134
Tnpo1 13 98839019 to 98926384 87365 - protein coding gene transportin 1
Tssr123656 13 98839554 to 98839569 15 - TSS region transcription start site region 123656
Tssr123657 13 98840291 to 98840302 11 - TSS region transcription start site region 123657
Tssr123658 13 98840389 to 98840399 10 - TSS region transcription start site region 123658
Tssr123659 13 98842992 to 98843014 22 - TSS region transcription start site region 123659
Tssr123660 13 98846802 to 98846810 8 - TSS region transcription start site region 123660
8030448K23Rik 13 98871163 to 98874491 3328 unclassified gene RIKEN cDNA 8030448K23 gene
Tssr123661 13 98872203 to 98872225 22 - TSS region transcription start site region 123661
Tssr123662 13 98874854 to 98874858 4 - TSS region transcription start site region 123662
Tssr123663 13 98877878 to 98877882 4 - TSS region transcription start site region 123663
Cpgi6014 13 98890082 to 98891224 1142 CpG island CpG island 6014
Tssr123664 13 98890787 to 98890805 18 - TSS region transcription start site region 123664
Tssr123665 13 98890974 to 98891035 61 - TSS region transcription start site region 123665
Tssr123666 13 98891036 to 98891063 27 - TSS region transcription start site region 123666
Tssr120817 13 98904195 to 98904199 4 + TSS region transcription start site region 120817
Gm5453 13 98904224 to 98904670 446 + pseudogene predicted gene 5453
Cpgi6015 13 98925613 to 98926930 1317 CpG island CpG island 6015
Tssr123667 13 98925613 to 98925624 11 - TSS region transcription start site region 123667
Tssr123668 13 98926296 to 98926308 12 - TSS region transcription start site region 123668
Tssr123669 13 98926312 to 98926357 45 - TSS region transcription start site region 123669
Tssr123670 13 98926360 to 98926373 13 - TSS region transcription start site region 123670
Tssr123671 13 98926374 to 98926389 15 - TSS region transcription start site region 123671
Tssr123672 13 98926636 to 98926688 52 - TSS region transcription start site region 123672
Gm35215 13 98936763 to 98945916 9153 - lincRNA gene predicted gene, 35215
Gm47052 13 98973378 to 98973742 364 + pseudogene predicted gene, 47052
1700024P04Rik 13 98984090 to 98984565 475 - protein coding gene RIKEN cDNA 1700024P04 gene
Tssr123673 13 98984558 to 98984571 13 - TSS region transcription start site region 123673
Tssr123674 13 98984601 to 98984605 4 - TSS region transcription start site region 123674
Gm41035 13 98987600 to 98990984 3384 - protein coding gene predicted gene, 41035
Gm35279 13 98994151 to 98997418 3267 + lincRNA gene predicted gene, 35279
Tssr120818 13 99007081 to 99007086 5 + TSS region transcription start site region 120818
A930014D07Rik 13 99007099 to 99021695 14596 + lincRNA gene RIKEN cDNA A930014D07 gene
Cpgi6016 13 99028453 to 99028604 151 CpG island CpG island 6016
Gm47057 13 99034309 to 99034848 539 - pseudogene predicted gene, 47057
Gm24733 13 99040398 to 99040650 252 - unclassified non-coding RNA gene predicted gene, 24733
Gm35493 13 99073062 to 99074034 972 + lncRNA gene predicted gene, 35493
2310020H05Rik 13 99076528 to 99087921 11393 - lincRNA gene RIKEN cDNA 2310020H05 gene
Tssr123675 13 99087902 to 99087926 24 - TSS region transcription start site region 123675
Tssr120819 13 99100698 to 99100719 21 + TSS region transcription start site region 120819
Gm807 13 99100706 to 99107580 6874 + lincRNA gene predicted gene 807
Gm45938 13 99110537 to 99122458 11921 + lncRNA gene predicted gene, 45938
Cpgi6017 13 99152615 to 99152841 226 CpG island CpG island 6017
Gm41036 13 99173120 to 99176459 3339 - lncRNA gene predicted gene, 41036
Tssr120820 13 99184685 to 99184726 41 + TSS region transcription start site region 120820
Tssr120821 13 99184733 to 99184755 22 + TSS region transcription start site region 120821
Zfp366 13 99184823 to 99247032 62209 + protein coding gene zinc finger protein 366
Tssr4148 13 99206176 to 99206179 3 + TSS region transcription start site region 4148
D13Mit109 13 99220877 to 99220989 112 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 109
Cpgi6018 13 99228552 to 99229572 1020 CpG island CpG island 6018
Tssr120822 13 99230271 to 99230275 4 + TSS region transcription start site region 120822
D13Dcr14 13 99233183 to 99233278 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 14
Cpgi6019 13 99246114 to 99246270 156 CpG island CpG island 6019
Tssr120823 13 99247682 to 99247693 11 + TSS region transcription start site region 120823
Tssr120824 13 99247695 to 99247707 12 + TSS region transcription start site region 120824
Tssr120825 13 99247776 to 99247792 16 + TSS region transcription start site region 120825
Tssr120826 13 99247828 to 99247882 54 + TSS region transcription start site region 120826
Tssr120827 13 99247898 to 99247909 11 + TSS region transcription start site region 120827
Tssr120828 13 99248012 to 99248029 17 + TSS region transcription start site region 120828
Ptcd2 13 99319649 to 99344678 25029 - protein coding gene pentatricopeptide repeat domain 2
Cpgi6020 13 99344303 to 99345021 718 CpG island CpG island 6020
Tssr123676 13 99344620 to 99344631 11 - TSS region transcription start site region 123676
Tssr123677 13 99344652 to 99344706 54 - TSS region transcription start site region 123677
Tssr120829 13 99344775 to 99344806 31 + TSS region transcription start site region 120829
Mrps27 13 99344786 to 99415562 70776 + protein coding gene mitochondrial ribosomal protein S27
Cpgi6021 13 99353079 to 99353574 495 CpG island CpG island 6021
Gm41038 13 99354717 to 99362958 8241 + lncRNA gene predicted gene, 41038
Tssr120830 13 99369758 to 99369764 6 + TSS region transcription start site region 120830
Gm41037 13 99396390 to 99409815 13425 - lncRNA gene predicted gene, 41037