Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:97908076-98629754

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef28 13 97899469 to 98206439 306970 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 28
Tssr120793 13 97919854 to 97919863 9 + TSS region transcription start site region 120793
Cpgi5995 13 97930827 to 97931157 330 CpG island CpG island 5995
Tssr123610 13 97967634 to 97967667 33 - TSS region transcription start site region 123610
4930448O17Rik 13 97980801 to 97981441 640 unclassified gene RIKEN cDNA 4930448O17 gene
Tssr123611 13 98013377 to 98013382 5 - TSS region transcription start site region 123611
Tssr123612 13 98014993 to 98015023 30 - TSS region transcription start site region 123612
Tssr123613 13 98016102 to 98016159 57 - TSS region transcription start site region 123613
Tssr123614 13 98016175 to 98016184 9 - TSS region transcription start site region 123614
Tssr123615 13 98016186 to 98016200 14 - TSS region transcription start site region 123615
Tssr123616 13 98016204 to 98016215 11 - TSS region transcription start site region 123616
Tssr123617 13 98016237 to 98016242 5 - TSS region transcription start site region 123617
Tssr123618 13 98016263 to 98016283 20 - TSS region transcription start site region 123618
Cpgi5996 13 98016475 to 98017001 526 CpG island CpG island 5996
Tssr123619 13 98030073 to 98030127 54 - TSS region transcription start site region 123619
Gm34469 13 98170451 to 98178479 8028 + lncRNA gene predicted gene, 34469
Cpgi5997 13 98171301 to 98171565 264 CpG island CpG island 5997
Cpgi5998 13 98205673 to 98206776 1103 CpG island CpG island 5998
Tssr123620 13 98206137 to 98206148 11 - TSS region transcription start site region 123620
Tssr123621 13 98206151 to 98206186 35 - TSS region transcription start site region 123621
Utp15 13 98246845 to 98262992 16147 - protein coding gene UTP15 small subunit processome component
Cpgi5999 13 98262676 to 98263720 1044 CpG island CpG island 5999
Tssr123622 13 98262946 to 98263020 74 - TSS region transcription start site region 123622
Tssr123623 13 98263026 to 98263047 21 - TSS region transcription start site region 123623
Ankra2 13 98263076 to 98274754 11678 + protein coding gene ankyrin repeat, family A (RFXANK-like), 2
Tssr120794 13 98263105 to 98263177 72 + TSS region transcription start site region 120794
Tssr120795 13 98263187 to 98263221 34 + TSS region transcription start site region 120795
Tssr120796 13 98263262 to 98263302 40 + TSS region transcription start site region 120796
Tssr120797 13 98263326 to 98263337 11 + TSS region transcription start site region 120797
Gm21976 13 98279887 to 98307154 27267 + protein coding gene predicted gene 21976
Btf3 13 98309897 to 98317006 7109 - protein coding gene basic transcription factor 3
Cpgi6000 13 98316331 to 98317313 982 CpG island CpG island 6000
Tssr120798 13 98316362 to 98316368 6 + TSS region transcription start site region 120798
Tssr120799 13 98316384 to 98316406 22 + TSS region transcription start site region 120799
Tssr120800 13 98316415 to 98316421 6 + TSS region transcription start site region 120800
Tssr120801 13 98316433 to 98316441 8 + TSS region transcription start site region 120801
Tssr123624 13 98316745 to 98316784 39 - TSS region transcription start site region 123624
Tssr123625 13 98316864 to 98316890 26 - TSS region transcription start site region 123625
Tssr123626 13 98316975 to 98317003 28 - TSS region transcription start site region 123626
Tssr120802 13 98317069 to 98317089 20 + TSS region transcription start site region 120802
Gm9828 13 98317116 to 98324415 7299 + bidirectional promoter lncRNA gene predicted gene 9828
Cpgi6001 13 98353989 to 98356291 2302 CpG island CpG island 6001
Tssr120803 13 98354234 to 98354250 16 + TSS region transcription start site region 120803
Foxd1 13 98354245 to 98356705 2460 + protein coding gene forkhead box D1
Tssr120804 13 98354281 to 98354288 7 + TSS region transcription start site region 120804
Tssr120805 13 98354388 to 98354399 11 + TSS region transcription start site region 120805
Tssr120806 13 98354440 to 98354451 11 + TSS region transcription start site region 120806
Tssr120807 13 98354774 to 98354790 16 + TSS region transcription start site region 120807
Tssr120808 13 98354802 to 98354809 7 + TSS region transcription start site region 120808
Tssr120809 13 98354981 to 98354997 16 + TSS region transcription start site region 120809
Tssr120810 13 98355084 to 98355096 12 + TSS region transcription start site region 120810
Tssr120811 13 98355102 to 98355114 12 + TSS region transcription start site region 120811
Tssr120812 13 98356235 to 98356238 3 + TSS region transcription start site region 120812
Cpgi6002 13 98365705 to 98367114 1409 CpG island CpG island 6002
Cpgi6003 13 98390920 to 98391610 690 CpG island CpG island 6003
Gm2445 13 98402095 to 98403083 988 - pseudogene predicted gene 2445
2310005E17Rik 13 98424110 to 98435065 10955 - lincRNA gene RIKEN cDNA 2310005E17 gene
Gm46437 13 98429333 to 98430788 1455 + lncRNA gene predicted gene, 46437
Cpgi6004 13 98429960 to 98430481 521 CpG island CpG island 6004
Gm29501 13 98476598 to 98477459 861 - lincRNA gene predicted gene 29501
Gm10320 13 98489359 to 98489841 482 - protein coding gene predicted pseudogene 10320
Cpgi6005 13 98502910 to 98503255 345 CpG island CpG island 6005
Cpgi6006 13 98504141 to 98505213 1072 CpG island CpG island 6006
Gm37425 13 98517364 to 98517938 574 - unclassified gene predicted gene, 37425
Cpgi6007 13 98517457 to 98517761 304 CpG island CpG island 6007
Gm41032 13 98529939 to 98536167 6228 - lncRNA gene predicted gene, 41032
Bdln11 13 98532770 to 98532770 0 QTL body length 11
Tssr123627 13 98535892 to 98535918 26 - TSS region transcription start site region 123627
Gm41033 13 98549116 to 98575040 25924 - lncRNA gene predicted gene, 41033
Tssr123628 13 98550771 to 98550776 5 - TSS region transcription start site region 123628
Gm48049 13 98557761 to 98558031 270 + pseudogene predicted gene, 48049
Gm22698 13 98560354 to 98560461 107 + miRNA gene predicted gene, 22698
Cpgi6008 13 98572654 to 98574147 1493 CpG island CpG island 6008
Cpgi6009 13 98588760 to 98589481 721 CpG island CpG island 6009
Gm48050 13 98608411 to 98617662 9251 - unclassified non-coding RNA gene predicted gene, 48050
Cpgi6010 13 98613218 to 98613571 353 CpG island CpG island 6010
Tssr120813 13 98613234 to 98613238 4 + TSS region transcription start site region 120813
Tssr120814 13 98613427 to 98613459 32 + TSS region transcription start site region 120814
Gm4815 13 98613501 to 98614491 990 + pseudogene predicted gene 4815