Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:97631475-98402001

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit259 13 97641480 to 97641573 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 259
Tssr123602 13 97711179 to 97711188 9 - TSS region transcription start site region 123602
Tssr123603 13 97711199 to 97711213 14 - TSS region transcription start site region 123603
Tssr123604 13 97711223 to 97711228 5 - TSS region transcription start site region 123604
5330416C01Rik 13 97733498 to 97747411 13913 - lincRNA gene RIKEN cDNA 5330416C01 gene
Tssr123605 13 97747373 to 97747384 11 - TSS region transcription start site region 123605
Tssr123606 13 97747399 to 97747414 15 - TSS region transcription start site region 123606
Gm26619 13 97751112 to 97760965 9853 + lincRNA gene predicted gene, 26619
Gm10260 13 97760087 to 97760609 522 - pseudogene predicted gene 10260
Tssr123607 13 97760632 to 97760633 1 - TSS region transcription start site region 123607
Tssr123608 13 97781212 to 97781221 9 - TSS region transcription start site region 123608
Gm47577 13 97790564 to 97793258 2694 + unclassified gene predicted gene, 47577
Gm41031 13 97808993 to 97826055 17062 - lincRNA gene predicted gene, 41031
Tssr123609 13 97820520 to 97820530 10 - TSS region transcription start site region 123609
Tssr120791 13 97844773 to 97844782 9 + TSS region transcription start site region 120791
Tssr120792 13 97847932 to 97847944 12 + TSS region transcription start site region 120792
Gm34388 13 97865841 to 97876662 10821 - lincRNA gene predicted gene, 34388
Arhgef28 13 97899469 to 98206439 306970 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 28
Tssr120793 13 97919854 to 97919863 9 + TSS region transcription start site region 120793
Cpgi5995 13 97930827 to 97931157 330 CpG island CpG island 5995
Tssr123610 13 97967634 to 97967667 33 - TSS region transcription start site region 123610
4930448O17Rik 13 97980801 to 97981441 640 unclassified gene RIKEN cDNA 4930448O17 gene
Tssr123611 13 98013377 to 98013382 5 - TSS region transcription start site region 123611
Tssr123612 13 98014993 to 98015023 30 - TSS region transcription start site region 123612
Tssr123613 13 98016102 to 98016159 57 - TSS region transcription start site region 123613
Tssr123614 13 98016175 to 98016184 9 - TSS region transcription start site region 123614
Tssr123615 13 98016186 to 98016200 14 - TSS region transcription start site region 123615
Tssr123616 13 98016204 to 98016215 11 - TSS region transcription start site region 123616
Tssr123617 13 98016237 to 98016242 5 - TSS region transcription start site region 123617
Tssr123618 13 98016263 to 98016283 20 - TSS region transcription start site region 123618
Cpgi5996 13 98016475 to 98017001 526 CpG island CpG island 5996
Tssr123619 13 98030073 to 98030127 54 - TSS region transcription start site region 123619
Gm34469 13 98170451 to 98178479 8028 + lncRNA gene predicted gene, 34469
Cpgi5997 13 98171301 to 98171565 264 CpG island CpG island 5997
Cpgi5998 13 98205673 to 98206776 1103 CpG island CpG island 5998
Tssr123620 13 98206137 to 98206148 11 - TSS region transcription start site region 123620
Tssr123621 13 98206151 to 98206186 35 - TSS region transcription start site region 123621
Utp15 13 98246845 to 98262992 16147 - protein coding gene UTP15 small subunit processome component
Cpgi5999 13 98262676 to 98263720 1044 CpG island CpG island 5999
Tssr123622 13 98262946 to 98263020 74 - TSS region transcription start site region 123622
Tssr123623 13 98263026 to 98263047 21 - TSS region transcription start site region 123623
Ankra2 13 98263076 to 98274754 11678 + protein coding gene ankyrin repeat, family A (RFXANK-like), 2
Tssr120794 13 98263105 to 98263177 72 + TSS region transcription start site region 120794
Tssr120795 13 98263187 to 98263221 34 + TSS region transcription start site region 120795
Tssr120796 13 98263262 to 98263302 40 + TSS region transcription start site region 120796
Tssr120797 13 98263326 to 98263337 11 + TSS region transcription start site region 120797
Gm21976 13 98279887 to 98307154 27267 + protein coding gene predicted gene 21976
Btf3 13 98309897 to 98317006 7109 - protein coding gene basic transcription factor 3
Cpgi6000 13 98316331 to 98317313 982 CpG island CpG island 6000
Tssr120798 13 98316362 to 98316368 6 + TSS region transcription start site region 120798
Tssr120799 13 98316384 to 98316406 22 + TSS region transcription start site region 120799
Tssr120800 13 98316415 to 98316421 6 + TSS region transcription start site region 120800
Tssr120801 13 98316433 to 98316441 8 + TSS region transcription start site region 120801
Tssr123624 13 98316745 to 98316784 39 - TSS region transcription start site region 123624
Tssr123625 13 98316864 to 98316890 26 - TSS region transcription start site region 123625
Tssr123626 13 98316975 to 98317003 28 - TSS region transcription start site region 123626
Tssr120802 13 98317069 to 98317089 20 + TSS region transcription start site region 120802
Gm9828 13 98317116 to 98324415 7299 + bidirectional promoter lncRNA gene predicted gene 9828
Cpgi6001 13 98353989 to 98356291 2302 CpG island CpG island 6001
Tssr120803 13 98354234 to 98354250 16 + TSS region transcription start site region 120803
Foxd1 13 98354245 to 98356705 2460 + protein coding gene forkhead box D1
Tssr120804 13 98354281 to 98354288 7 + TSS region transcription start site region 120804
Tssr120805 13 98354388 to 98354399 11 + TSS region transcription start site region 120805
Tssr120806 13 98354440 to 98354451 11 + TSS region transcription start site region 120806
Tssr120807 13 98354774 to 98354790 16 + TSS region transcription start site region 120807
Tssr120808 13 98354802 to 98354809 7 + TSS region transcription start site region 120808
Tssr120809 13 98354981 to 98354997 16 + TSS region transcription start site region 120809
Tssr120810 13 98355084 to 98355096 12 + TSS region transcription start site region 120810
Tssr120811 13 98355102 to 98355114 12 + TSS region transcription start site region 120811
Tssr120812 13 98356235 to 98356238 3 + TSS region transcription start site region 120812
Cpgi6002 13 98365705 to 98367114 1409 CpG island CpG island 6002
Cpgi6003 13 98390920 to 98391610 690 CpG island CpG island 6003