Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:97559234-99149250

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr120785 13 97559941 to 97559978 37 + TSS region transcription start site region 120785
Tssr120786 13 97559994 to 97560008 14 + TSS region transcription start site region 120786
Gm5086 13 97560000 to 97583994 23994 + lincRNA gene predicted gene 5086
Tssr120787 13 97560022 to 97560034 12 + TSS region transcription start site region 120787
Tssr120788 13 97579738 to 97579742 4 + TSS region transcription start site region 120788
Tssr123601 13 97588077 to 97588122 45 - TSS region transcription start site region 123601
D13Mit147 13 97589125 to 97589232 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 147
Tssr120789 13 97589969 to 97589975 6 + TSS region transcription start site region 120789
Tssr120790 13 97600256 to 97600289 33 + TSS region transcription start site region 120790
Gm34087 13 97602610 to 97622876 20266 - lncRNA gene predicted gene, 34087
D13Mit194 13 97608214 to 97608360 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 194
Gm48070 13 97609536 to 97609817 281 + pseudogene predicted gene, 48070
D13Mit259 13 97641480 to 97641573 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 259
Tssr123602 13 97711179 to 97711188 9 - TSS region transcription start site region 123602
Tssr123603 13 97711199 to 97711213 14 - TSS region transcription start site region 123603
Tssr123604 13 97711223 to 97711228 5 - TSS region transcription start site region 123604
5330416C01Rik 13 97733498 to 97747411 13913 - lincRNA gene RIKEN cDNA 5330416C01 gene
Tssr123605 13 97747373 to 97747384 11 - TSS region transcription start site region 123605
Tssr123606 13 97747399 to 97747414 15 - TSS region transcription start site region 123606
Gm26619 13 97751112 to 97760965 9853 + lincRNA gene predicted gene, 26619
Gm10260 13 97760087 to 97760609 522 - pseudogene predicted gene 10260
Tssr123607 13 97760632 to 97760633 1 - TSS region transcription start site region 123607
Tssr123608 13 97781212 to 97781221 9 - TSS region transcription start site region 123608
Gm47577 13 97790564 to 97793258 2694 + unclassified gene predicted gene, 47577
Gm41031 13 97808993 to 97826055 17062 - lincRNA gene predicted gene, 41031
Tssr123609 13 97820520 to 97820530 10 - TSS region transcription start site region 123609
Tssr120791 13 97844773 to 97844782 9 + TSS region transcription start site region 120791
Tssr120792 13 97847932 to 97847944 12 + TSS region transcription start site region 120792
Gm34388 13 97865841 to 97876662 10821 - lincRNA gene predicted gene, 34388
Arhgef28 13 97899469 to 98206439 306970 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 28
Tssr120793 13 97919854 to 97919863 9 + TSS region transcription start site region 120793
Cpgi5995 13 97930827 to 97931157 330 CpG island CpG island 5995
Tssr123610 13 97967634 to 97967667 33 - TSS region transcription start site region 123610
4930448O17Rik 13 97980801 to 97981441 640 unclassified gene RIKEN cDNA 4930448O17 gene
Tssr123611 13 98013377 to 98013382 5 - TSS region transcription start site region 123611
Tssr123612 13 98014993 to 98015023 30 - TSS region transcription start site region 123612
Tssr123613 13 98016102 to 98016159 57 - TSS region transcription start site region 123613
Tssr123614 13 98016175 to 98016184 9 - TSS region transcription start site region 123614
Tssr123615 13 98016186 to 98016200 14 - TSS region transcription start site region 123615
Tssr123616 13 98016204 to 98016215 11 - TSS region transcription start site region 123616
Tssr123617 13 98016237 to 98016242 5 - TSS region transcription start site region 123617
Tssr123618 13 98016263 to 98016283 20 - TSS region transcription start site region 123618
Cpgi5996 13 98016475 to 98017001 526 CpG island CpG island 5996
Tssr123619 13 98030073 to 98030127 54 - TSS region transcription start site region 123619
Gm34469 13 98170451 to 98178479 8028 + lncRNA gene predicted gene, 34469
Cpgi5997 13 98171301 to 98171565 264 CpG island CpG island 5997
Cpgi5998 13 98205673 to 98206776 1103 CpG island CpG island 5998
Tssr123620 13 98206137 to 98206148 11 - TSS region transcription start site region 123620
Tssr123621 13 98206151 to 98206186 35 - TSS region transcription start site region 123621
Utp15 13 98246845 to 98262992 16147 - protein coding gene UTP15 small subunit processome component
Cpgi5999 13 98262676 to 98263720 1044 CpG island CpG island 5999
Tssr123622 13 98262946 to 98263020 74 - TSS region transcription start site region 123622
Tssr123623 13 98263026 to 98263047 21 - TSS region transcription start site region 123623
Ankra2 13 98263076 to 98274754 11678 + protein coding gene ankyrin repeat, family A (RFXANK-like), 2
Tssr120794 13 98263105 to 98263177 72 + TSS region transcription start site region 120794
Tssr120795 13 98263187 to 98263221 34 + TSS region transcription start site region 120795
Tssr120796 13 98263262 to 98263302 40 + TSS region transcription start site region 120796
Tssr120797 13 98263326 to 98263337 11 + TSS region transcription start site region 120797
Gm21976 13 98279887 to 98307154 27267 + protein coding gene predicted gene 21976
Btf3 13 98309897 to 98317006 7109 - protein coding gene basic transcription factor 3
Cpgi6000 13 98316331 to 98317313 982 CpG island CpG island 6000
Tssr120798 13 98316362 to 98316368 6 + TSS region transcription start site region 120798
Tssr120799 13 98316384 to 98316406 22 + TSS region transcription start site region 120799
Tssr120800 13 98316415 to 98316421 6 + TSS region transcription start site region 120800
Tssr120801 13 98316433 to 98316441 8 + TSS region transcription start site region 120801
Tssr123624 13 98316745 to 98316784 39 - TSS region transcription start site region 123624
Tssr123625 13 98316864 to 98316890 26 - TSS region transcription start site region 123625
Tssr123626 13 98316975 to 98317003 28 - TSS region transcription start site region 123626
Tssr120802 13 98317069 to 98317089 20 + TSS region transcription start site region 120802
Gm9828 13 98317116 to 98324415 7299 + bidirectional promoter lncRNA gene predicted gene 9828
Cpgi6001 13 98353989 to 98356291 2302 CpG island CpG island 6001
Tssr120803 13 98354234 to 98354250 16 + TSS region transcription start site region 120803
Foxd1 13 98354245 to 98356705 2460 + protein coding gene forkhead box D1
Tssr120804 13 98354281 to 98354288 7 + TSS region transcription start site region 120804
Tssr120805 13 98354388 to 98354399 11 + TSS region transcription start site region 120805
Tssr120806 13 98354440 to 98354451 11 + TSS region transcription start site region 120806
Tssr120807 13 98354774 to 98354790 16 + TSS region transcription start site region 120807
Tssr120808 13 98354802 to 98354809 7 + TSS region transcription start site region 120808
Tssr120809 13 98354981 to 98354997 16 + TSS region transcription start site region 120809
Tssr120810 13 98355084 to 98355096 12 + TSS region transcription start site region 120810
Tssr120811 13 98355102 to 98355114 12 + TSS region transcription start site region 120811
Tssr120812 13 98356235 to 98356238 3 + TSS region transcription start site region 120812
Cpgi6002 13 98365705 to 98367114 1409 CpG island CpG island 6002
Cpgi6003 13 98390920 to 98391610 690 CpG island CpG island 6003
Gm2445 13 98402095 to 98403083 988 - pseudogene predicted gene 2445
2310005E17Rik 13 98424110 to 98435065 10955 - lincRNA gene RIKEN cDNA 2310005E17 gene
Gm46437 13 98429333 to 98430788 1455 + lncRNA gene predicted gene, 46437
Cpgi6004 13 98429960 to 98430481 521 CpG island CpG island 6004
Gm29501 13 98476598 to 98477459 861 - lincRNA gene predicted gene 29501
Gm10320 13 98489359 to 98489841 482 - protein coding gene predicted pseudogene 10320
Cpgi6005 13 98502910 to 98503255 345 CpG island CpG island 6005
Cpgi6006 13 98504141 to 98505213 1072 CpG island CpG island 6006
Gm37425 13 98517364 to 98517938 574 - unclassified gene predicted gene, 37425
Cpgi6007 13 98517457 to 98517761 304 CpG island CpG island 6007
Gm41032 13 98529939 to 98536167 6228 - lncRNA gene predicted gene, 41032
Bdln11 13 98532770 to 98532770 0 QTL body length 11
Tssr123627 13 98535892 to 98535918 26 - TSS region transcription start site region 123627
Gm41033 13 98549116 to 98575040 25924 - lncRNA gene predicted gene, 41033
Tssr123628 13 98550771 to 98550776 5 - TSS region transcription start site region 123628
Gm48049 13 98557761 to 98558031 270 + pseudogene predicted gene, 48049
Gm22698 13 98560354 to 98560461 107 + miRNA gene predicted gene, 22698
Cpgi6008 13 98572654 to 98574147 1493 CpG island CpG island 6008
Cpgi6009 13 98588760 to 98589481 721 CpG island CpG island 6009
Gm48050 13 98608411 to 98617662 9251 - unclassified non-coding RNA gene predicted gene, 48050
Cpgi6010 13 98613218 to 98613571 353 CpG island CpG island 6010
Tssr120813 13 98613234 to 98613238 4 + TSS region transcription start site region 120813
Tssr120814 13 98613427 to 98613459 32 + TSS region transcription start site region 120814
Gm4815 13 98613501 to 98614491 990 + pseudogene predicted gene 4815
Tmem174 13 98634978 to 98637410 2432 - protein coding gene transmembrane protein 174
Cpgi6011 13 98636715 to 98637308 593 CpG island CpG island 6011
Tssr123629 13 98637330 to 98637350 20 - TSS region transcription start site region 123629
Tssr123630 13 98637354 to 98637373 19 - TSS region transcription start site region 123630
Tmem171 13 98686235 to 98694834 8599 - protein coding gene transmembrane protein 171
Tssr123631 13 98688452 to 98688480 28 - TSS region transcription start site region 123631
Tssr123632 13 98692151 to 98692185 34 - TSS region transcription start site region 123632
Tssr123633 13 98692195 to 98692217 22 - TSS region transcription start site region 123633
Tssr120815 13 98692304 to 98692322 18 + TSS region transcription start site region 120815
Tssr123634 13 98692715 to 98692725 10 - TSS region transcription start site region 123634
Tssr123635 13 98692725 to 98692734 9 - TSS region transcription start site region 123635
Tssr123636 13 98692759 to 98692787 28 - TSS region transcription start site region 123636
Tssr123637 13 98692789 to 98692807 18 - TSS region transcription start site region 123637
Tssr123638 13 98693119 to 98693145 26 - TSS region transcription start site region 123638
Cpgi6012 13 98694698 to 98695383 685 CpG island CpG island 6012
Tssr123639 13 98694769 to 98694796 27 - TSS region transcription start site region 123639
Tssr123640 13 98694806 to 98694819 13 - TSS region transcription start site region 123640
Tssr123641 13 98694825 to 98694847 22 - TSS region transcription start site region 123641
Tssr123642 13 98694893 to 98694905 12 - TSS region transcription start site region 123642
Tssr123643 13 98695024 to 98695038 14 - TSS region transcription start site region 123643
Tssr123644 13 98695560 to 98695578 18 - TSS region transcription start site region 123644
Tssr123645 13 98695684 to 98695692 8 - TSS region transcription start site region 123645
Gm9465 13 98713074 to 98716510 3436 - lincRNA gene predicted gene 9465
Fcho2 13 98723403 to 98815449 92046 - protein coding gene FCH domain only 2
Tssr123646 13 98725703 to 98725733 30 - TSS region transcription start site region 123646
Gm47550 13 98732986 to 98734690 1704 + unclassified gene predicted gene, 47550
Tssr123647 13 98754331 to 98754361 30 - TSS region transcription start site region 123647
D130062J10Rik 13 98798611 to 98801410 2799 - sense intronic lncRNA gene RIKEN cDNA D130062J10 gene
Gm47551 13 98801172 to 98803736 2564 + antisense lncRNA gene predicted gene, 47551
Tssr123648 13 98803785 to 98803808 23 - TSS region transcription start site region 123648
Tssr123649 13 98813298 to 98813302 4 - TSS region transcription start site region 123649
Cpgi6013 13 98814387 to 98815823 1436 CpG island CpG island 6013
Tssr123650 13 98815120 to 98815201 81 - TSS region transcription start site region 123650
Tssr123651 13 98815221 to 98815257 36 - TSS region transcription start site region 123651
Tssr123652 13 98815263 to 98815275 12 - TSS region transcription start site region 123652
Tssr123653 13 98815365 to 98815402 37 - TSS region transcription start site region 123653
Tssr123654 13 98815408 to 98815431 23 - TSS region transcription start site region 123654
Tssr123655 13 98815584 to 98815606 22 - TSS region transcription start site region 123655
Gm34995 13 98815741 to 98832137 16396 + lncRNA gene predicted gene, 34995
Tssr120816 13 98816722 to 98816738 16 + TSS region transcription start site region 120816
Gm18134 13 98816752 to 98817265 513 + pseudogene predicted gene, 18134
Tnpo1 13 98839019 to 98926384 87365 - protein coding gene transportin 1
Tssr123656 13 98839554 to 98839569 15 - TSS region transcription start site region 123656
Tssr123657 13 98840291 to 98840302 11 - TSS region transcription start site region 123657
Tssr123658 13 98840389 to 98840399 10 - TSS region transcription start site region 123658
Tssr123659 13 98842992 to 98843014 22 - TSS region transcription start site region 123659
Tssr123660 13 98846802 to 98846810 8 - TSS region transcription start site region 123660
8030448K23Rik 13 98871163 to 98874491 3328 unclassified gene RIKEN cDNA 8030448K23 gene
Tssr123661 13 98872203 to 98872225 22 - TSS region transcription start site region 123661
Tssr123662 13 98874854 to 98874858 4 - TSS region transcription start site region 123662
Tssr123663 13 98877878 to 98877882 4 - TSS region transcription start site region 123663
Cpgi6014 13 98890082 to 98891224 1142 CpG island CpG island 6014
Tssr123664 13 98890787 to 98890805 18 - TSS region transcription start site region 123664
Tssr123665 13 98890974 to 98891035 61 - TSS region transcription start site region 123665
Tssr123666 13 98891036 to 98891063 27 - TSS region transcription start site region 123666
Tssr120817 13 98904195 to 98904199 4 + TSS region transcription start site region 120817
Gm5453 13 98904224 to 98904670 446 + pseudogene predicted gene 5453
Tssr123667 13 98925613 to 98925624 11 - TSS region transcription start site region 123667
Cpgi6015 13 98925613 to 98926930 1317 CpG island CpG island 6015
Tssr123668 13 98926296 to 98926308 12 - TSS region transcription start site region 123668
Tssr123669 13 98926312 to 98926357 45 - TSS region transcription start site region 123669
Tssr123670 13 98926360 to 98926373 13 - TSS region transcription start site region 123670
Tssr123671 13 98926374 to 98926389 15 - TSS region transcription start site region 123671
Tssr123672 13 98926636 to 98926688 52 - TSS region transcription start site region 123672
Gm35215 13 98936763 to 98945916 9153 - lincRNA gene predicted gene, 35215
Gm47052 13 98973378 to 98973742 364 + pseudogene predicted gene, 47052
1700024P04Rik 13 98984090 to 98984565 475 - protein coding gene RIKEN cDNA 1700024P04 gene
Tssr123673 13 98984558 to 98984571 13 - TSS region transcription start site region 123673
Tssr123674 13 98984601 to 98984605 4 - TSS region transcription start site region 123674
Gm41035 13 98987600 to 98990984 3384 - protein coding gene predicted gene, 41035
Gm35279 13 98994151 to 98997418 3267 + lincRNA gene predicted gene, 35279
Tssr120818 13 99007081 to 99007086 5 + TSS region transcription start site region 120818
A930014D07Rik 13 99007099 to 99021695 14596 + lincRNA gene RIKEN cDNA A930014D07 gene
Cpgi6016 13 99028453 to 99028604 151 CpG island CpG island 6016
Gm47057 13 99034309 to 99034848 539 - pseudogene predicted gene, 47057
Gm24733 13 99040398 to 99040650 252 - unclassified non-coding RNA gene predicted gene, 24733
Gm35493 13 99073062 to 99074034 972 + lncRNA gene predicted gene, 35493
2310020H05Rik 13 99076528 to 99087921 11393 - lincRNA gene RIKEN cDNA 2310020H05 gene
Tssr123675 13 99087902 to 99087926 24 - TSS region transcription start site region 123675
Tssr120819 13 99100698 to 99100719 21 + TSS region transcription start site region 120819
Gm807 13 99100706 to 99107580 6874 + lincRNA gene predicted gene 807
Gm45938 13 99110537 to 99122458 11921 + lncRNA gene predicted gene, 45938