Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:9712484-11472566

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zmynd11 13 9684833 to 9765330 80497 - protein coding gene zinc finger, MYND domain containing 11
Gm47802 13 9733897 to 9738234 4337 + antisense lncRNA gene predicted gene, 47802
Gm47826 13 9753741 to 9756879 3138 - unclassified gene predicted gene, 47826
Tssr121354 13 9754164 to 9754167 3 - TSS region transcription start site region 121354
Cpgi5270 13 9763502 to 9765357 1855 CpG island CpG island 5270
Tssr121355 13 9764371 to 9764421 50 - TSS region transcription start site region 121355
Tssr121356 13 9764431 to 9764475 44 - TSS region transcription start site region 121356
Tssr121357 13 9764584 to 9764595 11 - TSS region transcription start site region 121357
Tssr121358 13 9764865 to 9764941 76 - TSS region transcription start site region 121358
Tssr121359 13 9764943 to 9764994 51 - TSS region transcription start site region 121359
Tssr121360 13 9765137 to 9765184 47 - TSS region transcription start site region 121360
Tssr121361 13 9765240 to 9765257 17 - TSS region transcription start site region 121361
Tssr121362 13 9765361 to 9765370 9 - TSS region transcription start site region 121362
Gm40665 13 9796447 to 9801823 5376 + lncRNA gene predicted gene, 40665
Gm47401 13 9820511 to 9820733 222 + pseudogene predicted gene, 47401
Gm24187 13 9834469 to 9834525 56 - miRNA gene predicted gene, 24187
Tssr118334 13 9883298 to 9883308 10 + TSS region transcription start site region 118334
Gm47406 13 9892910 to 9894050 1140 + pseudogene predicted gene, 47406
D13Mit215 13 10046277 to 10046502 225 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 215
Gm47411 13 10048667 to 10051848 3181 - unclassified gene predicted gene, 47411
Gm47405 13 10064758 to 10070866 6108 - sense intronic lncRNA gene predicted gene, 47405
D13Mit172 13 10081042 to 10081188 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 172
9330159N22Rik 13 10164744 to 10165774 1030 - unclassified gene RIKEN cDNA 9330159N22 gene
Gm47404 13 10175784 to 10180807 5023 - sense intronic lncRNA gene predicted gene, 47404
Gm26861 13 10359165 to 10673847 314682 + antisense lncRNA gene predicted gene, 26861
Cpgi5271 13 10360077 to 10361200 1123 CpG island CpG island 5271
Tssr121363 13 10360810 to 10360853 43 - TSS region transcription start site region 121363
Chrm3 13 10360847 to 9875486 -485361 - protein coding gene cholinergic receptor, muscarinic 3, cardiac
Tssr121364 13 10360915 to 10360941 26 - TSS region transcription start site region 121364
Tssr121365 13 10360942 to 10360970 28 - TSS region transcription start site region 121365
Gm47407 13 10517687 to 10538811 21124 + lincRNA gene predicted gene, 47407
D13Mit216 13 10533271 to 10533390 119 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 216
Gm36525 13 10539738 to 10557707 17969 - lincRNA gene predicted gene, 36525
Tssr3991 13 10581557 to 10581559 2 + TSS region transcription start site region 3991
Gm23415 13 10592484 to 10592566 82 - miRNA gene predicted gene, 23415
Gm40666 13 10674389 to 10676726 2337 + lncRNA gene predicted gene, 40666
Gm47408 13 10700161 to 10830778 130617 + lincRNA gene predicted gene, 47408
Tssr3992 13 10889046 to 10889047 1 - TSS region transcription start site region 3992
Tssr3993 13 10947419 to 10947420 1 - TSS region transcription start site region 3993
Gm47486 13 10974423 to 10979945 5522 + lincRNA gene predicted gene, 47486
D13Mit304 13 11082352 to 11082454 102 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 304
Tssr118335 13 11345599 to 11345603 4 + TSS region transcription start site region 118335
Gm25496 13 11426779 to 11426898 119 - snoRNA gene predicted gene, 25496