Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:96787695-98177706

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ankrd31 13 96748289 to 96909794 161505 + protein coding gene ankyrin repeat domain 31
Tssr4146 13 96832374 to 96832379 5 + TSS region transcription start site region 4146
Gm48579 13 96870300 to 96870606 306 - pseudogene predicted gene, 48579
Gm27792 13 96897276 to 96897390 114 + rRNA gene predicted gene, 27792
Cpgi5986 13 96924371 to 96925584 1213 CpG island CpG island 5986
Tssr120746 13 96924656 to 96924659 3 + TSS region transcription start site region 120746
Tssr120747 13 96924674 to 96924694 20 + TSS region transcription start site region 120747
Gcnt4 13 96924689 to 96950906 26217 + protein coding gene glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
Tssr120748 13 96924704 to 96924730 26 + TSS region transcription start site region 120748
Tssr4147 13 96924762 to 96924765 3 + TSS region transcription start site region 4147
Gm48597 13 96950372 to 96950914 542 - antisense lncRNA gene predicted gene, 48597
Gm41027 13 96965977 to 96984375 18398 - lncRNA gene predicted gene, 41027
Cpgi5987 13 97007274 to 97007500 226 CpG island CpG island 5987
Gm48609 13 97014885 to 97015299 414 - pseudogene predicted gene, 48609
Tssr123574 13 97015304 to 97015316 12 - TSS region transcription start site region 123574
Gm41028 13 97016271 to 97059235 42964 + lncRNA gene predicted gene, 41028
1700029F12Rik 13 97021864 to 97034362 12498 - protein coding gene RIKEN cDNA 1700029F12 gene
Tssr123575 13 97022314 to 97022324 10 - TSS region transcription start site region 123575
Tssr123576 13 97022395 to 97022408 13 - TSS region transcription start site region 123576
Tssr123577 13 97022453 to 97022461 8 - TSS region transcription start site region 123577
Tssr123578 13 97030603 to 97030638 35 - TSS region transcription start site region 123578
Tssr123579 13 97034341 to 97034365 24 - TSS region transcription start site region 123579
Tssr123580 13 97034367 to 97034382 15 - TSS region transcription start site region 123580
Tssr123581 13 97034384 to 97034388 4 - TSS region transcription start site region 123581
Tssr123582 13 97035282 to 97035295 13 - TSS region transcription start site region 123582
Tssr123583 13 97035300 to 97035309 9 - TSS region transcription start site region 123583
Tssr120749 13 97065604 to 97065611 7 + TSS region transcription start site region 120749
Tssr120750 13 97067266 to 97067281 15 + TSS region transcription start site region 120750
Fam169a 13 97067287 to 97130447 63160 + protein coding gene family with sequence similarity 169, member A
Cpgi5988 13 97070950 to 97072364 1414 CpG island CpG island 5988
Tssr120751 13 97071288 to 97071317 29 + TSS region transcription start site region 120751
Tssr120752 13 97071331 to 97071356 25 + TSS region transcription start site region 120752
Tssr120753 13 97071408 to 97071424 16 + TSS region transcription start site region 120753
Tssr120754 13 97071434 to 97071447 13 + TSS region transcription start site region 120754
Tssr120755 13 97071563 to 97071626 63 + TSS region transcription start site region 120755
Tssr120756 13 97071627 to 97071637 10 + TSS region transcription start site region 120756
Tssr120757 13 97073563 to 97073570 7 + TSS region transcription start site region 120757
Tssr120758 13 97088483 to 97088489 6 + TSS region transcription start site region 120758
Tssr120759 13 97088544 to 97088582 38 + TSS region transcription start site region 120759
Gm6169 13 97098208 to 97099237 1029 - pseudogene predicted gene 6169
Tssr120760 13 97128655 to 97128673 18 + TSS region transcription start site region 120760
Nsa2 13 97129427 to 97137926 8499 - protein coding gene NSA2 ribosome biogenesis homolog
Cpgi5989 13 97137502 to 97138347 845 CpG island CpG island 5989
Tssr123584 13 97137877 to 97137916 39 - TSS region transcription start site region 123584
Tssr123585 13 97137922 to 97137942 20 - TSS region transcription start site region 123585
Gfm2 13 97137937 to 97181195 43258 + protein coding gene G elongation factor, mitochondrial 2
Tssr120761 13 97137967 to 97138013 46 + TSS region transcription start site region 120761
Hexb 13 97176331 to 97198357 22026 - protein coding gene hexosaminidase B
Tssr120762 13 97190536 to 97190575 39 + TSS region transcription start site region 120762
Tssr123586 13 97190566 to 97190610 44 - TSS region transcription start site region 123586
Tssr123587 13 97190634 to 97190639 5 - TSS region transcription start site region 123587
Cpgi5990 13 97197805 to 97198564 759 CpG island CpG island 5990
Tssr123588 13 97198273 to 97198282 9 - TSS region transcription start site region 123588
Tssr123589 13 97198287 to 97198337 50 - TSS region transcription start site region 123589
Tssr123590 13 97198351 to 97198362 11 - TSS region transcription start site region 123590
Tssr120763 13 97199431 to 97199436 5 + TSS region transcription start site region 120763
Gm48881 13 97202247 to 97202975 728 - pseudogene predicted gene, 48881
Tssr123591 13 97202956 to 97202957 1 - TSS region transcription start site region 123591
Tssr123592 13 97207031 to 97207035 4 - TSS region transcription start site region 123592
Tssr123593 13 97207049 to 97207058 9 - TSS region transcription start site region 123593
Tssr123594 13 97207074 to 97207080 6 - TSS region transcription start site region 123594
Tssr123595 13 97207084 to 97207089 5 - TSS region transcription start site region 123595
Cpgi5991 13 97240253 to 97242212 1959 CpG island CpG island 5991
Tssr120764 13 97240447 to 97240465 18 + TSS region transcription start site region 120764
Tssr120765 13 97241096 to 97241116 20 + TSS region transcription start site region 120765
Enc1 13 97241105 to 97253034 11929 + protein coding gene ectodermal-neural cortex 1
Tssr120766 13 97241122 to 97241129 7 + TSS region transcription start site region 120766
Tssr120767 13 97241214 to 97241232 18 + TSS region transcription start site region 120767
Tssr120768 13 97241252 to 97241268 16 + TSS region transcription start site region 120768
Tssr120769 13 97242030 to 97242077 47 + TSS region transcription start site region 120769
Tssr120770 13 97243940 to 97243976 36 + TSS region transcription start site region 120770
Tssr120771 13 97244058 to 97244065 7 + TSS region transcription start site region 120771
Tssr120772 13 97245975 to 97245987 12 + TSS region transcription start site region 120772
Cpgi5992 13 97246369 to 97246672 303 CpG island CpG island 5992
Tssr120773 13 97250720 to 97250722 2 + TSS region transcription start site region 120773
Tssr120774 13 97251364 to 97251370 6 + TSS region transcription start site region 120774
C430039J16Rik 13 97283183 to 97285560 2377 + lincRNA gene RIKEN cDNA C430039J16 gene
Tssr120775 13 97292174 to 97292177 3 + TSS region transcription start site region 120775
Gm33390 13 97293714 to 97299131 5417 - lncRNA gene predicted gene, 33390
Tssr120776 13 97294022 to 97294025 3 + TSS region transcription start site region 120776
Gm33447 13 97376234 to 97380465 4231 + lincRNA gene predicted gene, 33447
Tssr120777 13 97434921 to 97434941 20 + TSS region transcription start site region 120777
Lncenc1 13 97434970 to 97497007 62037 + lincRNA gene long non-coding RNA, embryonic stem cells expressed 1
Tssr123596 13 97435061 to 97435070 9 - TSS region transcription start site region 123596
Tssr123597 13 97435921 to 97435959 38 - TSS region transcription start site region 123597
Cpgi5993 13 97435989 to 97436195 206 CpG island CpG island 5993
Gm8756 13 97458149 to 97459077 928 - pseudogene predicted gene 8756
Tssr123598 13 97482508 to 97482521 13 - TSS region transcription start site region 123598
Tssr123599 13 97482538 to 97482550 12 - TSS region transcription start site region 123599
Tssr123600 13 97482576 to 97482598 22 - TSS region transcription start site region 123600
Tssr120778 13 97482695 to 97482706 11 + TSS region transcription start site region 120778
Tssr120779 13 97482747 to 97482759 12 + TSS region transcription start site region 120779
Cpgi5994 13 97484663 to 97484977 314 CpG island CpG island 5994
Tssr120780 13 97493576 to 97493605 29 + TSS region transcription start site region 120780
Tssr120781 13 97495073 to 97495089 16 + TSS region transcription start site region 120781
Tssr120782 13 97495250 to 97495259 9 + TSS region transcription start site region 120782
Tssr120783 13 97495931 to 97495945 14 + TSS region transcription start site region 120783
Tssr120784 13 97511151 to 97511180 29 + TSS region transcription start site region 120784
Gm2379 13 97511204 to 97515730 4526 + lincRNA gene predicted gene 2379
9330199F22Rik 13 97511499 to 97513239 1740 unclassified gene RIKEN cDNA 9330199F22 gene
Gm41030 13 97523200 to 97527455 4255 - lincRNA gene predicted gene, 41030
Gm41029 13 97532569 to 97538675 6106 - lncRNA gene predicted gene, 41029
Gm48090 13 97541712 to 97543335 1623 - unclassified gene predicted gene, 48090
Tssr120785 13 97559941 to 97559978 37 + TSS region transcription start site region 120785
Tssr120786 13 97559994 to 97560008 14 + TSS region transcription start site region 120786
Gm5086 13 97560000 to 97583994 23994 + lincRNA gene predicted gene 5086
Tssr120787 13 97560022 to 97560034 12 + TSS region transcription start site region 120787
Tssr120788 13 97579738 to 97579742 4 + TSS region transcription start site region 120788
Tssr123601 13 97588077 to 97588122 45 - TSS region transcription start site region 123601
D13Mit147 13 97589125 to 97589232 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 147
Tssr120789 13 97589969 to 97589975 6 + TSS region transcription start site region 120789
Tssr120790 13 97600256 to 97600289 33 + TSS region transcription start site region 120790
Gm34087 13 97602610 to 97622876 20266 - lncRNA gene predicted gene, 34087
D13Mit194 13 97608214 to 97608360 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 194
Gm48070 13 97609536 to 97609817 281 + pseudogene predicted gene, 48070
D13Mit259 13 97641480 to 97641573 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 259
Tssr123602 13 97711179 to 97711188 9 - TSS region transcription start site region 123602
Tssr123603 13 97711199 to 97711213 14 - TSS region transcription start site region 123603
Tssr123604 13 97711223 to 97711228 5 - TSS region transcription start site region 123604
5330416C01Rik 13 97733498 to 97747411 13913 - lincRNA gene RIKEN cDNA 5330416C01 gene
Tssr123605 13 97747373 to 97747384 11 - TSS region transcription start site region 123605
Tssr123606 13 97747399 to 97747414 15 - TSS region transcription start site region 123606
Gm26619 13 97751112 to 97760965 9853 + lincRNA gene predicted gene, 26619
Gm10260 13 97760087 to 97760609 522 - pseudogene predicted gene 10260
Tssr123607 13 97760632 to 97760633 1 - TSS region transcription start site region 123607
Tssr123608 13 97781212 to 97781221 9 - TSS region transcription start site region 123608
Gm47577 13 97790564 to 97793258 2694 + unclassified gene predicted gene, 47577
Gm41031 13 97808993 to 97826055 17062 - lincRNA gene predicted gene, 41031
Tssr123609 13 97820520 to 97820530 10 - TSS region transcription start site region 123609
Tssr120791 13 97844773 to 97844782 9 + TSS region transcription start site region 120791
Tssr120792 13 97847932 to 97847944 12 + TSS region transcription start site region 120792
Gm34388 13 97865841 to 97876662 10821 - lincRNA gene predicted gene, 34388
Arhgef28 13 97899469 to 98206439 306970 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 28
Tssr120793 13 97919854 to 97919863 9 + TSS region transcription start site region 120793
Cpgi5995 13 97930827 to 97931157 330 CpG island CpG island 5995
Tssr123610 13 97967634 to 97967667 33 - TSS region transcription start site region 123610
4930448O17Rik 13 97980801 to 97981441 640 unclassified gene RIKEN cDNA 4930448O17 gene
Tssr123611 13 98013377 to 98013382 5 - TSS region transcription start site region 123611
Tssr123612 13 98014993 to 98015023 30 - TSS region transcription start site region 123612
Tssr123613 13 98016102 to 98016159 57 - TSS region transcription start site region 123613
Tssr123614 13 98016175 to 98016184 9 - TSS region transcription start site region 123614
Tssr123615 13 98016186 to 98016200 14 - TSS region transcription start site region 123615
Tssr123616 13 98016204 to 98016215 11 - TSS region transcription start site region 123616
Tssr123617 13 98016237 to 98016242 5 - TSS region transcription start site region 123617
Tssr123618 13 98016263 to 98016283 20 - TSS region transcription start site region 123618
Cpgi5996 13 98016475 to 98017001 526 CpG island CpG island 5996
Tssr123619 13 98030073 to 98030127 54 - TSS region transcription start site region 123619
Gm34469 13 98170451 to 98178479 8028 + lncRNA gene predicted gene, 34469
Cpgi5997 13 98171301 to 98171565 264 CpG island CpG island 5997