Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:96716176-101696179

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671 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5985 13 96748258 to 96748759 501 CpG island CpG island 5985
Tssr120743 13 96748287 to 96748306 19 + TSS region transcription start site region 120743
Ankrd31 13 96748289 to 96909794 161505 + protein coding gene ankyrin repeat domain 31
Tssr120744 13 96748307 to 96748314 7 + TSS region transcription start site region 120744
Tssr120745 13 96748318 to 96748347 29 + TSS region transcription start site region 120745
D13Mit128 13 96770446 to 96770560 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 128
Gm48580 13 96776466 to 96777930 1464 - pseudogene predicted gene, 48580
D13Ertd476e 13 96780405 to 96780654 249 DNA segment DNA segment, Chr 13, ERATO Doi 476, expressed
Tssr4146 13 96832374 to 96832379 5 + TSS region transcription start site region 4146
Gm48579 13 96870300 to 96870606 306 - pseudogene predicted gene, 48579
Gm27792 13 96897276 to 96897390 114 + rRNA gene predicted gene, 27792
Cpgi5986 13 96924371 to 96925584 1213 CpG island CpG island 5986
Tssr120746 13 96924656 to 96924659 3 + TSS region transcription start site region 120746
Tssr120747 13 96924674 to 96924694 20 + TSS region transcription start site region 120747
Gcnt4 13 96924689 to 96950906 26217 + protein coding gene glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
Tssr120748 13 96924704 to 96924730 26 + TSS region transcription start site region 120748
Tssr4147 13 96924762 to 96924765 3 + TSS region transcription start site region 4147
Gm48597 13 96950372 to 96950914 542 - antisense lncRNA gene predicted gene, 48597
Gm41027 13 96965977 to 96984375 18398 - lncRNA gene predicted gene, 41027
Cpgi5987 13 97007274 to 97007500 226 CpG island CpG island 5987
Gm48609 13 97014885 to 97015299 414 - pseudogene predicted gene, 48609
Tssr123574 13 97015304 to 97015316 12 - TSS region transcription start site region 123574
Gm41028 13 97016271 to 97059235 42964 + lncRNA gene predicted gene, 41028
1700029F12Rik 13 97021864 to 97034362 12498 - protein coding gene RIKEN cDNA 1700029F12 gene
Tssr123575 13 97022314 to 97022324 10 - TSS region transcription start site region 123575
Tssr123576 13 97022395 to 97022408 13 - TSS region transcription start site region 123576
Tssr123577 13 97022453 to 97022461 8 - TSS region transcription start site region 123577
Tssr123578 13 97030603 to 97030638 35 - TSS region transcription start site region 123578
Tssr123579 13 97034341 to 97034365 24 - TSS region transcription start site region 123579
Tssr123580 13 97034367 to 97034382 15 - TSS region transcription start site region 123580
Tssr123581 13 97034384 to 97034388 4 - TSS region transcription start site region 123581
Tssr123582 13 97035282 to 97035295 13 - TSS region transcription start site region 123582
Tssr123583 13 97035300 to 97035309 9 - TSS region transcription start site region 123583
Tssr120749 13 97065604 to 97065611 7 + TSS region transcription start site region 120749
Tssr120750 13 97067266 to 97067281 15 + TSS region transcription start site region 120750
Fam169a 13 97067287 to 97130447 63160 + protein coding gene family with sequence similarity 169, member A
Cpgi5988 13 97070950 to 97072364 1414 CpG island CpG island 5988
Tssr120751 13 97071288 to 97071317 29 + TSS region transcription start site region 120751
Tssr120752 13 97071331 to 97071356 25 + TSS region transcription start site region 120752
Tssr120753 13 97071408 to 97071424 16 + TSS region transcription start site region 120753
Tssr120754 13 97071434 to 97071447 13 + TSS region transcription start site region 120754
Tssr120755 13 97071563 to 97071626 63 + TSS region transcription start site region 120755
Tssr120756 13 97071627 to 97071637 10 + TSS region transcription start site region 120756
Tssr120757 13 97073563 to 97073570 7 + TSS region transcription start site region 120757
Tssr120758 13 97088483 to 97088489 6 + TSS region transcription start site region 120758
Tssr120759 13 97088544 to 97088582 38 + TSS region transcription start site region 120759
Gm6169 13 97098208 to 97099237 1029 - pseudogene predicted gene 6169
Tssr120760 13 97128655 to 97128673 18 + TSS region transcription start site region 120760
Nsa2 13 97129427 to 97137926 8499 - protein coding gene NSA2 ribosome biogenesis homolog
Cpgi5989 13 97137502 to 97138347 845 CpG island CpG island 5989
Tssr123584 13 97137877 to 97137916 39 - TSS region transcription start site region 123584
Tssr123585 13 97137922 to 97137942 20 - TSS region transcription start site region 123585
Gfm2 13 97137937 to 97181195 43258 + protein coding gene G elongation factor, mitochondrial 2
Tssr120761 13 97137967 to 97138013 46 + TSS region transcription start site region 120761
Hexb 13 97176331 to 97198357 22026 - protein coding gene hexosaminidase B
Tssr120762 13 97190536 to 97190575 39 + TSS region transcription start site region 120762
Tssr123586 13 97190566 to 97190610 44 - TSS region transcription start site region 123586
Tssr123587 13 97190634 to 97190639 5 - TSS region transcription start site region 123587
Cpgi5990 13 97197805 to 97198564 759 CpG island CpG island 5990
Tssr123588 13 97198273 to 97198282 9 - TSS region transcription start site region 123588
Tssr123589 13 97198287 to 97198337 50 - TSS region transcription start site region 123589
Tssr123590 13 97198351 to 97198362 11 - TSS region transcription start site region 123590
Tssr120763 13 97199431 to 97199436 5 + TSS region transcription start site region 120763
Gm48881 13 97202247 to 97202975 728 - pseudogene predicted gene, 48881
Tssr123591 13 97202956 to 97202957 1 - TSS region transcription start site region 123591
Tssr123592 13 97207031 to 97207035 4 - TSS region transcription start site region 123592
Tssr123593 13 97207049 to 97207058 9 - TSS region transcription start site region 123593
Tssr123594 13 97207074 to 97207080 6 - TSS region transcription start site region 123594
Tssr123595 13 97207084 to 97207089 5 - TSS region transcription start site region 123595
Cpgi5991 13 97240253 to 97242212 1959 CpG island CpG island 5991
Tssr120764 13 97240447 to 97240465 18 + TSS region transcription start site region 120764
Tssr120765 13 97241096 to 97241116 20 + TSS region transcription start site region 120765
Enc1 13 97241105 to 97253034 11929 + protein coding gene ectodermal-neural cortex 1
Tssr120766 13 97241122 to 97241129 7 + TSS region transcription start site region 120766
Tssr120767 13 97241214 to 97241232 18 + TSS region transcription start site region 120767
Tssr120768 13 97241252 to 97241268 16 + TSS region transcription start site region 120768
Tssr120769 13 97242030 to 97242077 47 + TSS region transcription start site region 120769
Tssr120770 13 97243940 to 97243976 36 + TSS region transcription start site region 120770
Tssr120771 13 97244058 to 97244065 7 + TSS region transcription start site region 120771
Tssr120772 13 97245975 to 97245987 12 + TSS region transcription start site region 120772
Cpgi5992 13 97246369 to 97246672 303 CpG island CpG island 5992
Tssr120773 13 97250720 to 97250722 2 + TSS region transcription start site region 120773
Tssr120774 13 97251364 to 97251370 6 + TSS region transcription start site region 120774
C430039J16Rik 13 97283183 to 97285560 2377 + lincRNA gene RIKEN cDNA C430039J16 gene
Tssr120775 13 97292174 to 97292177 3 + TSS region transcription start site region 120775
Gm33390 13 97293714 to 97299131 5417 - lncRNA gene predicted gene, 33390
Tssr120776 13 97294022 to 97294025 3 + TSS region transcription start site region 120776
Gm33447 13 97376234 to 97380465 4231 + lincRNA gene predicted gene, 33447
Tssr120777 13 97434921 to 97434941 20 + TSS region transcription start site region 120777
Lncenc1 13 97434970 to 97497007 62037 + lincRNA gene long non-coding RNA, embryonic stem cells expressed 1
Tssr123596 13 97435061 to 97435070 9 - TSS region transcription start site region 123596
Tssr123597 13 97435921 to 97435959 38 - TSS region transcription start site region 123597
Cpgi5993 13 97435989 to 97436195 206 CpG island CpG island 5993
Gm8756 13 97458149 to 97459077 928 - pseudogene predicted gene 8756
Tssr123598 13 97482508 to 97482521 13 - TSS region transcription start site region 123598
Tssr123599 13 97482538 to 97482550 12 - TSS region transcription start site region 123599
Tssr123600 13 97482576 to 97482598 22 - TSS region transcription start site region 123600
Tssr120778 13 97482695 to 97482706 11 + TSS region transcription start site region 120778
Tssr120779 13 97482747 to 97482759 12 + TSS region transcription start site region 120779
Cpgi5994 13 97484663 to 97484977 314 CpG island CpG island 5994
Tssr120780 13 97493576 to 97493605 29 + TSS region transcription start site region 120780
Tssr120781 13 97495073 to 97495089 16 + TSS region transcription start site region 120781
Tssr120782 13 97495250 to 97495259 9 + TSS region transcription start site region 120782
Tssr120783 13 97495931 to 97495945 14 + TSS region transcription start site region 120783
Tssr120784 13 97511151 to 97511180 29 + TSS region transcription start site region 120784
Gm2379 13 97511204 to 97515730 4526 + lincRNA gene predicted gene 2379
9330199F22Rik 13 97511499 to 97513239 1740 unclassified gene RIKEN cDNA 9330199F22 gene
Gm41030 13 97523200 to 97527455 4255 - lincRNA gene predicted gene, 41030
Gm41029 13 97532569 to 97538675 6106 - lncRNA gene predicted gene, 41029
Gm48090 13 97541712 to 97543335 1623 - unclassified gene predicted gene, 48090
Tssr120785 13 97559941 to 97559978 37 + TSS region transcription start site region 120785
Tssr120786 13 97559994 to 97560008 14 + TSS region transcription start site region 120786
Gm5086 13 97560000 to 97583994 23994 + lincRNA gene predicted gene 5086
Tssr120787 13 97560022 to 97560034 12 + TSS region transcription start site region 120787
Tssr120788 13 97579738 to 97579742 4 + TSS region transcription start site region 120788
Tssr123601 13 97588077 to 97588122 45 - TSS region transcription start site region 123601
D13Mit147 13 97589125 to 97589232 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 147
Tssr120789 13 97589969 to 97589975 6 + TSS region transcription start site region 120789
Tssr120790 13 97600256 to 97600289 33 + TSS region transcription start site region 120790
Gm34087 13 97602610 to 97622876 20266 - lncRNA gene predicted gene, 34087
D13Mit194 13 97608214 to 97608360 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 194
Gm48070 13 97609536 to 97609817 281 + pseudogene predicted gene, 48070
D13Mit259 13 97641480 to 97641573 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 259
Tssr123602 13 97711179 to 97711188 9 - TSS region transcription start site region 123602
Tssr123603 13 97711199 to 97711213 14 - TSS region transcription start site region 123603
Tssr123604 13 97711223 to 97711228 5 - TSS region transcription start site region 123604
5330416C01Rik 13 97733498 to 97747411 13913 - lincRNA gene RIKEN cDNA 5330416C01 gene
Tssr123605 13 97747373 to 97747384 11 - TSS region transcription start site region 123605
Tssr123606 13 97747399 to 97747414 15 - TSS region transcription start site region 123606
Gm26619 13 97751112 to 97760965 9853 + lincRNA gene predicted gene, 26619
Gm10260 13 97760087 to 97760609 522 - pseudogene predicted gene 10260
Tssr123607 13 97760632 to 97760633 1 - TSS region transcription start site region 123607
Tssr123608 13 97781212 to 97781221 9 - TSS region transcription start site region 123608
Gm47577 13 97790564 to 97793258 2694 + unclassified gene predicted gene, 47577
Gm41031 13 97808993 to 97826055 17062 - lincRNA gene predicted gene, 41031
Tssr123609 13 97820520 to 97820530 10 - TSS region transcription start site region 123609
Tssr120791 13 97844773 to 97844782 9 + TSS region transcription start site region 120791
Tssr120792 13 97847932 to 97847944 12 + TSS region transcription start site region 120792
Gm34388 13 97865841 to 97876662 10821 - lincRNA gene predicted gene, 34388
Arhgef28 13 97899469 to 98206439 306970 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 28
Tssr120793 13 97919854 to 97919863 9 + TSS region transcription start site region 120793
Cpgi5995 13 97930827 to 97931157 330 CpG island CpG island 5995
Tssr123610 13 97967634 to 97967667 33 - TSS region transcription start site region 123610
4930448O17Rik 13 97980801 to 97981441 640 unclassified gene RIKEN cDNA 4930448O17 gene
Tssr123611 13 98013377 to 98013382 5 - TSS region transcription start site region 123611
Tssr123612 13 98014993 to 98015023 30 - TSS region transcription start site region 123612
Tssr123613 13 98016102 to 98016159 57 - TSS region transcription start site region 123613
Tssr123614 13 98016175 to 98016184 9 - TSS region transcription start site region 123614
Tssr123615 13 98016186 to 98016200 14 - TSS region transcription start site region 123615
Tssr123616 13 98016204 to 98016215 11 - TSS region transcription start site region 123616
Tssr123617 13 98016237 to 98016242 5 - TSS region transcription start site region 123617
Tssr123618 13 98016263 to 98016283 20 - TSS region transcription start site region 123618
Cpgi5996 13 98016475 to 98017001 526 CpG island CpG island 5996
Tssr123619 13 98030073 to 98030127 54 - TSS region transcription start site region 123619
Gm34469 13 98170451 to 98178479 8028 + lncRNA gene predicted gene, 34469
Cpgi5997 13 98171301 to 98171565 264 CpG island CpG island 5997
Cpgi5998 13 98205673 to 98206776 1103 CpG island CpG island 5998
Tssr123620 13 98206137 to 98206148 11 - TSS region transcription start site region 123620
Tssr123621 13 98206151 to 98206186 35 - TSS region transcription start site region 123621
Utp15 13 98246845 to 98262992 16147 - protein coding gene UTP15 small subunit processome component
Cpgi5999 13 98262676 to 98263720 1044 CpG island CpG island 5999
Tssr123622 13 98262946 to 98263020 74 - TSS region transcription start site region 123622
Tssr123623 13 98263026 to 98263047 21 - TSS region transcription start site region 123623
Ankra2 13 98263076 to 98274754 11678 + protein coding gene ankyrin repeat, family A (RFXANK-like), 2
Tssr120794 13 98263105 to 98263177 72 + TSS region transcription start site region 120794
Tssr120795 13 98263187 to 98263221 34 + TSS region transcription start site region 120795
Tssr120796 13 98263262 to 98263302 40 + TSS region transcription start site region 120796
Tssr120797 13 98263326 to 98263337 11 + TSS region transcription start site region 120797
Gm21976 13 98279887 to 98307154 27267 + protein coding gene predicted gene 21976
Btf3 13 98309897 to 98317006 7109 - protein coding gene basic transcription factor 3
Cpgi6000 13 98316331 to 98317313 982 CpG island CpG island 6000
Tssr120798 13 98316362 to 98316368 6 + TSS region transcription start site region 120798
Tssr120799 13 98316384 to 98316406 22 + TSS region transcription start site region 120799
Tssr120800 13 98316415 to 98316421 6 + TSS region transcription start site region 120800
Tssr120801 13 98316433 to 98316441 8 + TSS region transcription start site region 120801
Tssr123624 13 98316745 to 98316784 39 - TSS region transcription start site region 123624
Tssr123625 13 98316864 to 98316890 26 - TSS region transcription start site region 123625
Tssr123626 13 98316975 to 98317003 28 - TSS region transcription start site region 123626
Tssr120802 13 98317069 to 98317089 20 + TSS region transcription start site region 120802
Gm9828 13 98317116 to 98324415 7299 + bidirectional promoter lncRNA gene predicted gene 9828
Cpgi6001 13 98353989 to 98356291 2302 CpG island CpG island 6001
Tssr120803 13 98354234 to 98354250 16 + TSS region transcription start site region 120803
Foxd1 13 98354245 to 98356705 2460 + protein coding gene forkhead box D1
Tssr120804 13 98354281 to 98354288 7 + TSS region transcription start site region 120804
Tssr120805 13 98354388 to 98354399 11 + TSS region transcription start site region 120805
Tssr120806 13 98354440 to 98354451 11 + TSS region transcription start site region 120806
Tssr120807 13 98354774 to 98354790 16 + TSS region transcription start site region 120807
Tssr120808 13 98354802 to 98354809 7 + TSS region transcription start site region 120808
Tssr120809 13 98354981 to 98354997 16 + TSS region transcription start site region 120809
Tssr120810 13 98355084 to 98355096 12 + TSS region transcription start site region 120810
Tssr120811 13 98355102 to 98355114 12 + TSS region transcription start site region 120811
Tssr120812 13 98356235 to 98356238 3 + TSS region transcription start site region 120812
Cpgi6002 13 98365705 to 98367114 1409 CpG island CpG island 6002
Cpgi6003 13 98390920 to 98391610 690 CpG island CpG island 6003
Gm2445 13 98402095 to 98403083 988 - pseudogene predicted gene 2445
2310005E17Rik 13 98424110 to 98435065 10955 - lincRNA gene RIKEN cDNA 2310005E17 gene
Gm46437 13 98429333 to 98430788 1455 + lncRNA gene predicted gene, 46437
Cpgi6004 13 98429960 to 98430481 521 CpG island CpG island 6004
Gm29501 13 98476598 to 98477459 861 - lincRNA gene predicted gene 29501
Gm10320 13 98489359 to 98489841 482 - protein coding gene predicted pseudogene 10320