Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:96507877-97767916

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Polk 13 96480690 to 96542579 61889 - protein coding gene polymerase (DNA directed), kappa
D13Mit111 13 96536912 to 96537061 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 111
Cpgi5983 13 96542216 to 96543670 1454 CpG island CpG island 5983
Tssr123562 13 96542322 to 96542333 11 - TSS region transcription start site region 123562
Tssr123563 13 96542334 to 96542345 11 - TSS region transcription start site region 123563
Tssr123564 13 96542434 to 96542445 11 - TSS region transcription start site region 123564
Tssr123565 13 96542479 to 96542523 44 - TSS region transcription start site region 123565
Tssr120735 13 96542517 to 96542522 5 + TSS region transcription start site region 120735
Tssr120736 13 96542541 to 96542562 21 + TSS region transcription start site region 120736
Tssr123566 13 96542554 to 96542567 13 - TSS region transcription start site region 123566
Tssr120737 13 96542602 to 96542626 24 + TSS region transcription start site region 120737
Tssr120738 13 96542727 to 96542775 48 + TSS region transcription start site region 120738
Col4a3bp 13 96542735 to 96640167 97432 + protein coding gene collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Gm48133 13 96542993 to 96543652 659 - antisense lncRNA gene predicted gene, 48133
Tssr120739 13 96543074 to 96543083 9 + TSS region transcription start site region 120739
Gm48138 13 96556232 to 96559111 2879 + unclassified gene predicted gene, 48138
Tssr120740 13 96565404 to 96565410 6 + TSS region transcription start site region 120740
Gm46436 13 96576630 to 96577923 1293 + lncRNA gene predicted gene, 46436
Tssr120741 13 96603063 to 96603074 11 + TSS region transcription start site region 120741
Gm48139 13 96605677 to 96609591 3914 + unclassified gene predicted gene, 48139
Tssr120742 13 96638963 to 96638967 4 + TSS region transcription start site region 120742
Hmgcr 13 96648967 to 96670936 21969 - protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A reductase
Tssr123567 13 96649829 to 96649837 8 - TSS region transcription start site region 123567
Tssr123568 13 96658672 to 96658700 28 - TSS region transcription start site region 123568
Tssr123569 13 96666709 to 96666727 18 - TSS region transcription start site region 123569
Cpgi5984 13 96670316 to 96671412 1096 CpG island CpG island 5984
Tssr123570 13 96670815 to 96670829 14 - TSS region transcription start site region 123570
Tssr123571 13 96670838 to 96670903 65 - TSS region transcription start site region 123571
Tssr123572 13 96671499 to 96671511 12 - TSS region transcription start site region 123572
Tssr123573 13 96671602 to 96671633 31 - TSS region transcription start site region 123573
Gm48575 13 96677469 to 96678123 654 - pseudogene predicted gene, 48575
Gm33171 13 96698023 to 96703747 5724 + lncRNA gene predicted gene, 33171
Cpgi5985 13 96748258 to 96748759 501 CpG island CpG island 5985
Tssr120743 13 96748287 to 96748306 19 + TSS region transcription start site region 120743
Ankrd31 13 96748289 to 96909794 161505 + protein coding gene ankyrin repeat domain 31
Tssr120744 13 96748307 to 96748314 7 + TSS region transcription start site region 120744
Tssr120745 13 96748318 to 96748347 29 + TSS region transcription start site region 120745
D13Mit128 13 96770446 to 96770560 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 128
Gm48580 13 96776466 to 96777930 1464 - pseudogene predicted gene, 48580
D13Ertd476e 13 96780405 to 96780654 249 DNA segment DNA segment, Chr 13, ERATO Doi 476, expressed
Tssr4146 13 96832374 to 96832379 5 + TSS region transcription start site region 4146
Gm48579 13 96870300 to 96870606 306 - pseudogene predicted gene, 48579
Gm27792 13 96897276 to 96897390 114 + rRNA gene predicted gene, 27792
Cpgi5986 13 96924371 to 96925584 1213 CpG island CpG island 5986
Tssr120746 13 96924656 to 96924659 3 + TSS region transcription start site region 120746
Tssr120747 13 96924674 to 96924694 20 + TSS region transcription start site region 120747
Gcnt4 13 96924689 to 96950906 26217 + protein coding gene glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
Tssr120748 13 96924704 to 96924730 26 + TSS region transcription start site region 120748
Tssr4147 13 96924762 to 96924765 3 + TSS region transcription start site region 4147
Gm48597 13 96950372 to 96950914 542 - antisense lncRNA gene predicted gene, 48597
Gm41027 13 96965977 to 96984375 18398 - lncRNA gene predicted gene, 41027
Cpgi5987 13 97007274 to 97007500 226 CpG island CpG island 5987
Gm48609 13 97014885 to 97015299 414 - pseudogene predicted gene, 48609
Tssr123574 13 97015304 to 97015316 12 - TSS region transcription start site region 123574
Gm41028 13 97016271 to 97059235 42964 + lncRNA gene predicted gene, 41028
1700029F12Rik 13 97021864 to 97034362 12498 - protein coding gene RIKEN cDNA 1700029F12 gene
Tssr123575 13 97022314 to 97022324 10 - TSS region transcription start site region 123575
Tssr123576 13 97022395 to 97022408 13 - TSS region transcription start site region 123576
Tssr123577 13 97022453 to 97022461 8 - TSS region transcription start site region 123577
Tssr123578 13 97030603 to 97030638 35 - TSS region transcription start site region 123578
Tssr123579 13 97034341 to 97034365 24 - TSS region transcription start site region 123579
Tssr123580 13 97034367 to 97034382 15 - TSS region transcription start site region 123580
Tssr123581 13 97034384 to 97034388 4 - TSS region transcription start site region 123581
Tssr123582 13 97035282 to 97035295 13 - TSS region transcription start site region 123582
Tssr123583 13 97035300 to 97035309 9 - TSS region transcription start site region 123583
Tssr120749 13 97065604 to 97065611 7 + TSS region transcription start site region 120749
Tssr120750 13 97067266 to 97067281 15 + TSS region transcription start site region 120750
Fam169a 13 97067287 to 97130447 63160 + protein coding gene family with sequence similarity 169, member A
Cpgi5988 13 97070950 to 97072364 1414 CpG island CpG island 5988
Tssr120751 13 97071288 to 97071317 29 + TSS region transcription start site region 120751
Tssr120752 13 97071331 to 97071356 25 + TSS region transcription start site region 120752
Tssr120753 13 97071408 to 97071424 16 + TSS region transcription start site region 120753
Tssr120754 13 97071434 to 97071447 13 + TSS region transcription start site region 120754
Tssr120755 13 97071563 to 97071626 63 + TSS region transcription start site region 120755
Tssr120756 13 97071627 to 97071637 10 + TSS region transcription start site region 120756
Tssr120757 13 97073563 to 97073570 7 + TSS region transcription start site region 120757
Tssr120758 13 97088483 to 97088489 6 + TSS region transcription start site region 120758
Tssr120759 13 97088544 to 97088582 38 + TSS region transcription start site region 120759
Gm6169 13 97098208 to 97099237 1029 - pseudogene predicted gene 6169
Tssr120760 13 97128655 to 97128673 18 + TSS region transcription start site region 120760
Nsa2 13 97129427 to 97137926 8499 - protein coding gene NSA2 ribosome biogenesis homolog
Cpgi5989 13 97137502 to 97138347 845 CpG island CpG island 5989
Tssr123584 13 97137877 to 97137916 39 - TSS region transcription start site region 123584
Tssr123585 13 97137922 to 97137942 20 - TSS region transcription start site region 123585
Gfm2 13 97137937 to 97181195 43258 + protein coding gene G elongation factor, mitochondrial 2
Tssr120761 13 97137967 to 97138013 46 + TSS region transcription start site region 120761
Hexb 13 97176331 to 97198357 22026 - protein coding gene hexosaminidase B
Tssr120762 13 97190536 to 97190575 39 + TSS region transcription start site region 120762
Tssr123586 13 97190566 to 97190610 44 - TSS region transcription start site region 123586
Tssr123587 13 97190634 to 97190639 5 - TSS region transcription start site region 123587
Cpgi5990 13 97197805 to 97198564 759 CpG island CpG island 5990
Tssr123588 13 97198273 to 97198282 9 - TSS region transcription start site region 123588
Tssr123589 13 97198287 to 97198337 50 - TSS region transcription start site region 123589
Tssr123590 13 97198351 to 97198362 11 - TSS region transcription start site region 123590
Tssr120763 13 97199431 to 97199436 5 + TSS region transcription start site region 120763
Gm48881 13 97202247 to 97202975 728 - pseudogene predicted gene, 48881
Tssr123591 13 97202956 to 97202957 1 - TSS region transcription start site region 123591
Tssr123592 13 97207031 to 97207035 4 - TSS region transcription start site region 123592
Tssr123593 13 97207049 to 97207058 9 - TSS region transcription start site region 123593
Tssr123594 13 97207074 to 97207080 6 - TSS region transcription start site region 123594
Tssr123595 13 97207084 to 97207089 5 - TSS region transcription start site region 123595
Cpgi5991 13 97240253 to 97242212 1959 CpG island CpG island 5991
Tssr120764 13 97240447 to 97240465 18 + TSS region transcription start site region 120764
Tssr120765 13 97241096 to 97241116 20 + TSS region transcription start site region 120765
Enc1 13 97241105 to 97253034 11929 + protein coding gene ectodermal-neural cortex 1
Tssr120766 13 97241122 to 97241129 7 + TSS region transcription start site region 120766
Tssr120767 13 97241214 to 97241232 18 + TSS region transcription start site region 120767
Tssr120768 13 97241252 to 97241268 16 + TSS region transcription start site region 120768
Tssr120769 13 97242030 to 97242077 47 + TSS region transcription start site region 120769
Tssr120770 13 97243940 to 97243976 36 + TSS region transcription start site region 120770
Tssr120771 13 97244058 to 97244065 7 + TSS region transcription start site region 120771
Tssr120772 13 97245975 to 97245987 12 + TSS region transcription start site region 120772
Cpgi5992 13 97246369 to 97246672 303 CpG island CpG island 5992
Tssr120773 13 97250720 to 97250722 2 + TSS region transcription start site region 120773
Tssr120774 13 97251364 to 97251370 6 + TSS region transcription start site region 120774
C430039J16Rik 13 97283183 to 97285560 2377 + lincRNA gene RIKEN cDNA C430039J16 gene
Tssr120775 13 97292174 to 97292177 3 + TSS region transcription start site region 120775
Gm33390 13 97293714 to 97299131 5417 - lncRNA gene predicted gene, 33390
Tssr120776 13 97294022 to 97294025 3 + TSS region transcription start site region 120776
Gm33447 13 97376234 to 97380465 4231 + lincRNA gene predicted gene, 33447
Tssr120777 13 97434921 to 97434941 20 + TSS region transcription start site region 120777
Lncenc1 13 97434970 to 97497007 62037 + lincRNA gene long non-coding RNA, embryonic stem cells expressed 1
Tssr123596 13 97435061 to 97435070 9 - TSS region transcription start site region 123596
Tssr123597 13 97435921 to 97435959 38 - TSS region transcription start site region 123597
Cpgi5993 13 97435989 to 97436195 206 CpG island CpG island 5993
Gm8756 13 97458149 to 97459077 928 - pseudogene predicted gene 8756
Tssr123598 13 97482508 to 97482521 13 - TSS region transcription start site region 123598
Tssr123599 13 97482538 to 97482550 12 - TSS region transcription start site region 123599
Tssr123600 13 97482576 to 97482598 22 - TSS region transcription start site region 123600
Tssr120778 13 97482695 to 97482706 11 + TSS region transcription start site region 120778
Tssr120779 13 97482747 to 97482759 12 + TSS region transcription start site region 120779
Cpgi5994 13 97484663 to 97484977 314 CpG island CpG island 5994
Tssr120780 13 97493576 to 97493605 29 + TSS region transcription start site region 120780
Tssr120781 13 97495073 to 97495089 16 + TSS region transcription start site region 120781
Tssr120782 13 97495250 to 97495259 9 + TSS region transcription start site region 120782
Tssr120783 13 97495931 to 97495945 14 + TSS region transcription start site region 120783
Tssr120784 13 97511151 to 97511180 29 + TSS region transcription start site region 120784
Gm2379 13 97511204 to 97515730 4526 + lincRNA gene predicted gene 2379
9330199F22Rik 13 97511499 to 97513239 1740 unclassified gene RIKEN cDNA 9330199F22 gene
Gm41030 13 97523200 to 97527455 4255 - lincRNA gene predicted gene, 41030
Gm41029 13 97532569 to 97538675 6106 - lncRNA gene predicted gene, 41029
Gm48090 13 97541712 to 97543335 1623 - unclassified gene predicted gene, 48090
Tssr120785 13 97559941 to 97559978 37 + TSS region transcription start site region 120785
Tssr120786 13 97559994 to 97560008 14 + TSS region transcription start site region 120786
Gm5086 13 97560000 to 97583994 23994 + lincRNA gene predicted gene 5086
Tssr120787 13 97560022 to 97560034 12 + TSS region transcription start site region 120787
Tssr120788 13 97579738 to 97579742 4 + TSS region transcription start site region 120788
Tssr123601 13 97588077 to 97588122 45 - TSS region transcription start site region 123601
D13Mit147 13 97589125 to 97589232 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 147
Tssr120789 13 97589969 to 97589975 6 + TSS region transcription start site region 120789
Tssr120790 13 97600256 to 97600289 33 + TSS region transcription start site region 120790
Gm34087 13 97602610 to 97622876 20266 - lncRNA gene predicted gene, 34087
D13Mit194 13 97608214 to 97608360 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 194
Gm48070 13 97609536 to 97609817 281 + pseudogene predicted gene, 48070
D13Mit259 13 97641480 to 97641573 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 259
Tssr123602 13 97711179 to 97711188 9 - TSS region transcription start site region 123602
Tssr123603 13 97711199 to 97711213 14 - TSS region transcription start site region 123603
Tssr123604 13 97711223 to 97711228 5 - TSS region transcription start site region 123604
5330416C01Rik 13 97733498 to 97747411 13913 - lincRNA gene RIKEN cDNA 5330416C01 gene
Tssr123605 13 97747373 to 97747384 11 - TSS region transcription start site region 123605
Tssr123606 13 97747399 to 97747414 15 - TSS region transcription start site region 123606
Gm26619 13 97751112 to 97760965 9853 + lincRNA gene predicted gene, 26619
Gm10260 13 97760087 to 97760609 522 - pseudogene predicted gene 10260
Tssr123607 13 97760632 to 97760633 1 - TSS region transcription start site region 123607