Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:96468289-97189794

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ankdd1b 13 96416134 to 96471198 55064 - protein coding gene ankyrin repeat and death domain containing 1B
Tssr4145 13 96470769 to 96470774 5 + TSS region transcription start site region 4145
Tssr123560 13 96471179 to 96471190 11 - TSS region transcription start site region 123560
Tssr123561 13 96471214 to 96471224 10 - TSS region transcription start site region 123561
Polk 13 96480690 to 96542579 61889 - protein coding gene polymerase (DNA directed), kappa
Gm17622 13 96490733 to 96491120 387 + protein coding gene predicted gene, 17622
D13Mit111 13 96536912 to 96537061 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 111
Cpgi5983 13 96542216 to 96543670 1454 CpG island CpG island 5983
Tssr123562 13 96542322 to 96542333 11 - TSS region transcription start site region 123562
Tssr123563 13 96542334 to 96542345 11 - TSS region transcription start site region 123563
Tssr123564 13 96542434 to 96542445 11 - TSS region transcription start site region 123564
Tssr123565 13 96542479 to 96542523 44 - TSS region transcription start site region 123565
Tssr120735 13 96542517 to 96542522 5 + TSS region transcription start site region 120735
Tssr120736 13 96542541 to 96542562 21 + TSS region transcription start site region 120736
Tssr123566 13 96542554 to 96542567 13 - TSS region transcription start site region 123566
Tssr120737 13 96542602 to 96542626 24 + TSS region transcription start site region 120737
Tssr120738 13 96542727 to 96542775 48 + TSS region transcription start site region 120738
Col4a3bp 13 96542735 to 96640167 97432 + protein coding gene collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Gm48133 13 96542993 to 96543652 659 - antisense lncRNA gene predicted gene, 48133
Tssr120739 13 96543074 to 96543083 9 + TSS region transcription start site region 120739
Gm48138 13 96556232 to 96559111 2879 + unclassified gene predicted gene, 48138
Tssr120740 13 96565404 to 96565410 6 + TSS region transcription start site region 120740
Gm46436 13 96576630 to 96577923 1293 + lncRNA gene predicted gene, 46436
Tssr120741 13 96603063 to 96603074 11 + TSS region transcription start site region 120741
Gm48139 13 96605677 to 96609591 3914 + unclassified gene predicted gene, 48139
Tssr120742 13 96638963 to 96638967 4 + TSS region transcription start site region 120742
Hmgcr 13 96648967 to 96670936 21969 - protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A reductase
Tssr123567 13 96649829 to 96649837 8 - TSS region transcription start site region 123567
Tssr123568 13 96658672 to 96658700 28 - TSS region transcription start site region 123568
Tssr123569 13 96666709 to 96666727 18 - TSS region transcription start site region 123569
Cpgi5984 13 96670316 to 96671412 1096 CpG island CpG island 5984
Tssr123570 13 96670815 to 96670829 14 - TSS region transcription start site region 123570
Tssr123571 13 96670838 to 96670903 65 - TSS region transcription start site region 123571
Tssr123572 13 96671499 to 96671511 12 - TSS region transcription start site region 123572
Tssr123573 13 96671602 to 96671633 31 - TSS region transcription start site region 123573
Gm48575 13 96677469 to 96678123 654 - pseudogene predicted gene, 48575
Gm33171 13 96698023 to 96703747 5724 + lncRNA gene predicted gene, 33171
Cpgi5985 13 96748258 to 96748759 501 CpG island CpG island 5985
Tssr120743 13 96748287 to 96748306 19 + TSS region transcription start site region 120743
Ankrd31 13 96748289 to 96909794 161505 + protein coding gene ankyrin repeat domain 31
Tssr120744 13 96748307 to 96748314 7 + TSS region transcription start site region 120744
Tssr120745 13 96748318 to 96748347 29 + TSS region transcription start site region 120745
D13Mit128 13 96770446 to 96770560 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 128
Gm48580 13 96776466 to 96777930 1464 - pseudogene predicted gene, 48580
D13Ertd476e 13 96780405 to 96780654 249 DNA segment DNA segment, Chr 13, ERATO Doi 476, expressed
Tssr4146 13 96832374 to 96832379 5 + TSS region transcription start site region 4146
Gm48579 13 96870300 to 96870606 306 - pseudogene predicted gene, 48579
Gm27792 13 96897276 to 96897390 114 + rRNA gene predicted gene, 27792
Cpgi5986 13 96924371 to 96925584 1213 CpG island CpG island 5986
Tssr120746 13 96924656 to 96924659 3 + TSS region transcription start site region 120746
Tssr120747 13 96924674 to 96924694 20 + TSS region transcription start site region 120747
Gcnt4 13 96924689 to 96950906 26217 + protein coding gene glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
Tssr120748 13 96924704 to 96924730 26 + TSS region transcription start site region 120748
Tssr4147 13 96924762 to 96924765 3 + TSS region transcription start site region 4147
Gm48597 13 96950372 to 96950914 542 - antisense lncRNA gene predicted gene, 48597
Gm41027 13 96965977 to 96984375 18398 - lncRNA gene predicted gene, 41027
Cpgi5987 13 97007274 to 97007500 226 CpG island CpG island 5987
Gm48609 13 97014885 to 97015299 414 - pseudogene predicted gene, 48609
Tssr123574 13 97015304 to 97015316 12 - TSS region transcription start site region 123574
Gm41028 13 97016271 to 97059235 42964 + lncRNA gene predicted gene, 41028
1700029F12Rik 13 97021864 to 97034362 12498 - protein coding gene RIKEN cDNA 1700029F12 gene
Tssr123575 13 97022314 to 97022324 10 - TSS region transcription start site region 123575
Tssr123576 13 97022395 to 97022408 13 - TSS region transcription start site region 123576
Tssr123577 13 97022453 to 97022461 8 - TSS region transcription start site region 123577
Tssr123578 13 97030603 to 97030638 35 - TSS region transcription start site region 123578
Tssr123579 13 97034341 to 97034365 24 - TSS region transcription start site region 123579
Tssr123580 13 97034367 to 97034382 15 - TSS region transcription start site region 123580
Tssr123581 13 97034384 to 97034388 4 - TSS region transcription start site region 123581
Tssr123582 13 97035282 to 97035295 13 - TSS region transcription start site region 123582
Tssr123583 13 97035300 to 97035309 9 - TSS region transcription start site region 123583
Tssr120749 13 97065604 to 97065611 7 + TSS region transcription start site region 120749
Tssr120750 13 97067266 to 97067281 15 + TSS region transcription start site region 120750
Fam169a 13 97067287 to 97130447 63160 + protein coding gene family with sequence similarity 169, member A
Cpgi5988 13 97070950 to 97072364 1414 CpG island CpG island 5988
Tssr120751 13 97071288 to 97071317 29 + TSS region transcription start site region 120751
Tssr120752 13 97071331 to 97071356 25 + TSS region transcription start site region 120752
Tssr120753 13 97071408 to 97071424 16 + TSS region transcription start site region 120753
Tssr120754 13 97071434 to 97071447 13 + TSS region transcription start site region 120754
Tssr120755 13 97071563 to 97071626 63 + TSS region transcription start site region 120755
Tssr120756 13 97071627 to 97071637 10 + TSS region transcription start site region 120756
Tssr120757 13 97073563 to 97073570 7 + TSS region transcription start site region 120757
Tssr120758 13 97088483 to 97088489 6 + TSS region transcription start site region 120758
Tssr120759 13 97088544 to 97088582 38 + TSS region transcription start site region 120759
Gm6169 13 97098208 to 97099237 1029 - pseudogene predicted gene 6169
Tssr120760 13 97128655 to 97128673 18 + TSS region transcription start site region 120760
Nsa2 13 97129427 to 97137926 8499 - protein coding gene NSA2 ribosome biogenesis homolog
Cpgi5989 13 97137502 to 97138347 845 CpG island CpG island 5989
Tssr123584 13 97137877 to 97137916 39 - TSS region transcription start site region 123584
Tssr123585 13 97137922 to 97137942 20 - TSS region transcription start site region 123585
Gfm2 13 97137937 to 97181195 43258 + protein coding gene G elongation factor, mitochondrial 2
Tssr120761 13 97137967 to 97138013 46 + TSS region transcription start site region 120761
Hexb 13 97176331 to 97198357 22026 - protein coding gene hexosaminidase B