Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:96124526-96724827

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sv2c 13 95959443 to 96132577 173134 - protein coding gene synaptic vesicle glycoprotein 2c
Cpgi5981 13 96131000 to 96133762 2762 CpG island CpG island 5981
Tssr123554 13 96132521 to 96132530 9 - TSS region transcription start site region 123554
Tssr123555 13 96132543 to 96132567 24 - TSS region transcription start site region 123555
Tssr123556 13 96132568 to 96132628 60 - TSS region transcription start site region 123556
Tssr123557 13 96132669 to 96132687 18 - TSS region transcription start site region 123557
Tssr123558 13 96132700 to 96132711 11 - TSS region transcription start site region 123558
Gm29543 13 96133369 to 96134335 966 + lincRNA gene predicted gene 29543
Gm25213 13 96357111 to 96357223 112 + miRNA gene predicted gene, 25213
Gm8712 13 96376930 to 96377630 700 + pseudogene predicted gene 8712
Cpgi5982 13 96388216 to 96388717 501 CpG island CpG island 5982
Poc5 13 96388294 to 96417211 28917 + protein coding gene POC5 centriolar protein
Tssr120732 13 96388305 to 96388338 33 + TSS region transcription start site region 120732
Tssr120733 13 96388345 to 96388380 35 + TSS region transcription start site region 120733
Tssr120734 13 96388387 to 96388401 14 + TSS region transcription start site region 120734
Ankdd1b 13 96416134 to 96471198 55064 - protein coding gene ankyrin repeat and death domain containing 1B
D13Gor3 13 96424526 to 96424827 301 DNA segment DNA segment, Chr 13, Gorin 3
Tssr123559 13 96435956 to 96435967 11 - TSS region transcription start site region 123559
Tssr4145 13 96470769 to 96470774 5 + TSS region transcription start site region 4145
Tssr123560 13 96471179 to 96471190 11 - TSS region transcription start site region 123560
Tssr123561 13 96471214 to 96471224 10 - TSS region transcription start site region 123561
Polk 13 96480690 to 96542579 61889 - protein coding gene polymerase (DNA directed), kappa
Gm17622 13 96490733 to 96491120 387 + protein coding gene predicted gene, 17622
D13Mit111 13 96536912 to 96537061 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 111
Cpgi5983 13 96542216 to 96543670 1454 CpG island CpG island 5983
Tssr123562 13 96542322 to 96542333 11 - TSS region transcription start site region 123562
Tssr123563 13 96542334 to 96542345 11 - TSS region transcription start site region 123563
Tssr123564 13 96542434 to 96542445 11 - TSS region transcription start site region 123564
Tssr123565 13 96542479 to 96542523 44 - TSS region transcription start site region 123565
Tssr120735 13 96542517 to 96542522 5 + TSS region transcription start site region 120735
Tssr120736 13 96542541 to 96542562 21 + TSS region transcription start site region 120736
Tssr123566 13 96542554 to 96542567 13 - TSS region transcription start site region 123566
Tssr120737 13 96542602 to 96542626 24 + TSS region transcription start site region 120737
Tssr120738 13 96542727 to 96542775 48 + TSS region transcription start site region 120738
Col4a3bp 13 96542735 to 96640167 97432 + protein coding gene collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Gm48133 13 96542993 to 96543652 659 - antisense lncRNA gene predicted gene, 48133
Tssr120739 13 96543074 to 96543083 9 + TSS region transcription start site region 120739
Gm48138 13 96556232 to 96559111 2879 + unclassified gene predicted gene, 48138
Tssr120740 13 96565404 to 96565410 6 + TSS region transcription start site region 120740
Gm46436 13 96576630 to 96577923 1293 + lncRNA gene predicted gene, 46436
Tssr120741 13 96603063 to 96603074 11 + TSS region transcription start site region 120741
Gm48139 13 96605677 to 96609591 3914 + unclassified gene predicted gene, 48139
Tssr120742 13 96638963 to 96638967 4 + TSS region transcription start site region 120742
Hmgcr 13 96648967 to 96670936 21969 - protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A reductase
Tssr123567 13 96649829 to 96649837 8 - TSS region transcription start site region 123567
Tssr123568 13 96658672 to 96658700 28 - TSS region transcription start site region 123568
Tssr123569 13 96666709 to 96666727 18 - TSS region transcription start site region 123569
Cpgi5984 13 96670316 to 96671412 1096 CpG island CpG island 5984
Tssr123570 13 96670815 to 96670829 14 - TSS region transcription start site region 123570
Tssr123571 13 96670838 to 96670903 65 - TSS region transcription start site region 123571
Tssr123572 13 96671499 to 96671511 12 - TSS region transcription start site region 123572
Tssr123573 13 96671602 to 96671633 31 - TSS region transcription start site region 123573
Gm48575 13 96677469 to 96678123 654 - pseudogene predicted gene, 48575
Gm33171 13 96698023 to 96703747 5724 + lncRNA gene predicted gene, 33171