Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:95780690-97242579

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq5 13 35876925 to 96102654 60225729 QTL spontaneous crescentic glomerulonephritis QTL 5
Cia28 13 56481436 to 96102654 39621218 QTL collagen induced arthritis QTL 28
Iqgap2 13 95627177 to 95891922 264745 - protein coding gene IQ motif containing GTPase activating protein 2
D13Mit145 13 95824704 to 95824847 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 145
Tssr120727 13 95845239 to 95845253 14 + TSS region transcription start site region 120727
Tssr123535 13 95883403 to 95883410 7 - TSS region transcription start site region 123535
Tssr123536 13 95884055 to 95884060 5 - TSS region transcription start site region 123536
Tssr123537 13 95889373 to 95889377 4 - TSS region transcription start site region 123537
Cpgi5978 13 95890855 to 95892602 1747 CpG island CpG island 5978
Tssr123538 13 95891714 to 95891733 19 - TSS region transcription start site region 123538
Tssr123539 13 95891881 to 95891902 21 - TSS region transcription start site region 123539
Tssr123540 13 95891905 to 95891929 24 - TSS region transcription start site region 123540
Tssr123541 13 95892199 to 95892213 14 - TSS region transcription start site region 123541
Tssr123542 13 95892279 to 95892286 7 - TSS region transcription start site region 123542
Tssr123543 13 95892502 to 95892519 17 - TSS region transcription start site region 123543
Tssr120728 13 95893462 to 95893508 46 + TSS region transcription start site region 120728
Gm24032 13 95896962 to 95897120 158 - snRNA gene predicted gene, 24032
Tssr123544 13 95897115 to 95897120 5 - TSS region transcription start site region 123544
Tssr123545 13 95912554 to 95912567 13 - TSS region transcription start site region 123545
Tssr123546 13 95912587 to 95912610 23 - TSS region transcription start site region 123546
Tssr4144 13 95918495 to 95918504 9 - TSS region transcription start site region 4144
Tssr123547 13 95957610 to 95957612 2 - TSS region transcription start site region 123547
Sv2c 13 95959443 to 96132577 173134 - protein coding gene synaptic vesicle glycoprotein 2c
Tssr120729 13 95960656 to 95960670 14 + TSS region transcription start site region 120729
Cpgi5979 13 95961230 to 95961679 449 CpG island CpG island 5979
Tssr123548 13 95961485 to 95961494 9 - TSS region transcription start site region 123548
Tssr123549 13 95961577 to 95961587 10 - TSS region transcription start site region 123549
Tssr123550 13 95961653 to 95961672 19 - TSS region transcription start site region 123550
D13Ertd324e 13 95983174 to 95983396 222 DNA segment DNA segment, Chr 13, ERATO Doi 324, expressed
Tssr120730 13 95988421 to 95988437 16 + TSS region transcription start site region 120730
Cpgi5980 13 95989690 to 95990106 416 CpG island CpG island 5980
Tssr123551 13 96011034 to 96011042 8 - TSS region transcription start site region 123551
Tssr120731 13 96011515 to 96011523 8 + TSS region transcription start site region 120731
Gm20075 13 96079233 to 96081375 2142 - pseudogene predicted gene, 20075
Tssr123552 13 96081278 to 96081302 24 - TSS region transcription start site region 123552
Tssr123553 13 96081363 to 96081376 13 - TSS region transcription start site region 123553
Gm17190 13 96082057 to 96082970 913 + pseudogene predicted gene 17190
Heal18 13 96102537 to 96102654 117 QTL wound healing regeneration 18
D13Mit144 13 96102537 to 96102654 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 144
Gm23955 13 96104463 to 96104562 99 - snRNA gene predicted gene, 23955
Cpgi5981 13 96131000 to 96133762 2762 CpG island CpG island 5981
Tssr123554 13 96132521 to 96132530 9 - TSS region transcription start site region 123554
Tssr123555 13 96132543 to 96132567 24 - TSS region transcription start site region 123555
Tssr123556 13 96132568 to 96132628 60 - TSS region transcription start site region 123556
Tssr123557 13 96132669 to 96132687 18 - TSS region transcription start site region 123557
Tssr123558 13 96132700 to 96132711 11 - TSS region transcription start site region 123558
Gm29543 13 96133369 to 96134335 966 + lincRNA gene predicted gene 29543
Gm25213 13 96357111 to 96357223 112 + miRNA gene predicted gene, 25213
Gm8712 13 96376930 to 96377630 700 + pseudogene predicted gene 8712
Cpgi5982 13 96388216 to 96388717 501 CpG island CpG island 5982
Poc5 13 96388294 to 96417211 28917 + protein coding gene POC5 centriolar protein
Tssr120732 13 96388305 to 96388338 33 + TSS region transcription start site region 120732
Tssr120733 13 96388345 to 96388380 35 + TSS region transcription start site region 120733
Tssr120734 13 96388387 to 96388401 14 + TSS region transcription start site region 120734
Ankdd1b 13 96416134 to 96471198 55064 - protein coding gene ankyrin repeat and death domain containing 1B
D13Gor3 13 96424526 to 96424827 301 DNA segment DNA segment, Chr 13, Gorin 3
Tssr123559 13 96435956 to 96435967 11 - TSS region transcription start site region 123559
Tssr4145 13 96470769 to 96470774 5 + TSS region transcription start site region 4145
Tssr123560 13 96471179 to 96471190 11 - TSS region transcription start site region 123560
Tssr123561 13 96471214 to 96471224 10 - TSS region transcription start site region 123561
Polk 13 96480690 to 96542579 61889 - protein coding gene polymerase (DNA directed), kappa
Gm17622 13 96490733 to 96491120 387 + protein coding gene predicted gene, 17622
D13Mit111 13 96536912 to 96537061 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 111
Cpgi5983 13 96542216 to 96543670 1454 CpG island CpG island 5983
Tssr123562 13 96542322 to 96542333 11 - TSS region transcription start site region 123562
Tssr123563 13 96542334 to 96542345 11 - TSS region transcription start site region 123563
Tssr123564 13 96542434 to 96542445 11 - TSS region transcription start site region 123564
Tssr123565 13 96542479 to 96542523 44 - TSS region transcription start site region 123565
Tssr120735 13 96542517 to 96542522 5 + TSS region transcription start site region 120735
Tssr120736 13 96542541 to 96542562 21 + TSS region transcription start site region 120736
Tssr123566 13 96542554 to 96542567 13 - TSS region transcription start site region 123566
Tssr120737 13 96542602 to 96542626 24 + TSS region transcription start site region 120737
Tssr120738 13 96542727 to 96542775 48 + TSS region transcription start site region 120738
Col4a3bp 13 96542735 to 96640167 97432 + protein coding gene collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Gm48133 13 96542993 to 96543652 659 - antisense lncRNA gene predicted gene, 48133
Tssr120739 13 96543074 to 96543083 9 + TSS region transcription start site region 120739
Gm48138 13 96556232 to 96559111 2879 + unclassified gene predicted gene, 48138
Tssr120740 13 96565404 to 96565410 6 + TSS region transcription start site region 120740
Gm46436 13 96576630 to 96577923 1293 + lncRNA gene predicted gene, 46436
Tssr120741 13 96603063 to 96603074 11 + TSS region transcription start site region 120741
Gm48139 13 96605677 to 96609591 3914 + unclassified gene predicted gene, 48139
Tssr120742 13 96638963 to 96638967 4 + TSS region transcription start site region 120742
Hmgcr 13 96648967 to 96670936 21969 - protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A reductase
Tssr123567 13 96649829 to 96649837 8 - TSS region transcription start site region 123567
Tssr123568 13 96658672 to 96658700 28 - TSS region transcription start site region 123568
Tssr123569 13 96666709 to 96666727 18 - TSS region transcription start site region 123569
Cpgi5984 13 96670316 to 96671412 1096 CpG island CpG island 5984
Tssr123570 13 96670815 to 96670829 14 - TSS region transcription start site region 123570
Tssr123571 13 96670838 to 96670903 65 - TSS region transcription start site region 123571
Tssr123572 13 96671499 to 96671511 12 - TSS region transcription start site region 123572
Tssr123573 13 96671602 to 96671633 31 - TSS region transcription start site region 123573
Gm48575 13 96677469 to 96678123 654 - pseudogene predicted gene, 48575
Gm33171 13 96698023 to 96703747 5724 + lncRNA gene predicted gene, 33171
Cpgi5985 13 96748258 to 96748759 501 CpG island CpG island 5985
Tssr120743 13 96748287 to 96748306 19 + TSS region transcription start site region 120743
Ankrd31 13 96748289 to 96909794 161505 + protein coding gene ankyrin repeat domain 31
Tssr120744 13 96748307 to 96748314 7 + TSS region transcription start site region 120744
Tssr120745 13 96748318 to 96748347 29 + TSS region transcription start site region 120745
D13Mit128 13 96770446 to 96770560 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 128
Gm48580 13 96776466 to 96777930 1464 - pseudogene predicted gene, 48580
D13Ertd476e 13 96780405 to 96780654 249 DNA segment DNA segment, Chr 13, ERATO Doi 476, expressed
Tssr4146 13 96832374 to 96832379 5 + TSS region transcription start site region 4146
Gm48579 13 96870300 to 96870606 306 - pseudogene predicted gene, 48579
Gm27792 13 96897276 to 96897390 114 + rRNA gene predicted gene, 27792
Cpgi5986 13 96924371 to 96925584 1213 CpG island CpG island 5986
Tssr120746 13 96924656 to 96924659 3 + TSS region transcription start site region 120746
Tssr120747 13 96924674 to 96924694 20 + TSS region transcription start site region 120747
Gcnt4 13 96924689 to 96950906 26217 + protein coding gene glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
Tssr120748 13 96924704 to 96924730 26 + TSS region transcription start site region 120748
Tssr4147 13 96924762 to 96924765 3 + TSS region transcription start site region 4147
Gm48597 13 96950372 to 96950914 542 - antisense lncRNA gene predicted gene, 48597
Gm41027 13 96965977 to 96984375 18398 - lncRNA gene predicted gene, 41027
Cpgi5987 13 97007274 to 97007500 226 CpG island CpG island 5987
Gm48609 13 97014885 to 97015299 414 - pseudogene predicted gene, 48609
Tssr123574 13 97015304 to 97015316 12 - TSS region transcription start site region 123574
Gm41028 13 97016271 to 97059235 42964 + lncRNA gene predicted gene, 41028
1700029F12Rik 13 97021864 to 97034362 12498 - protein coding gene RIKEN cDNA 1700029F12 gene
Tssr123575 13 97022314 to 97022324 10 - TSS region transcription start site region 123575
Tssr123576 13 97022395 to 97022408 13 - TSS region transcription start site region 123576
Tssr123577 13 97022453 to 97022461 8 - TSS region transcription start site region 123577
Tssr123578 13 97030603 to 97030638 35 - TSS region transcription start site region 123578
Tssr123579 13 97034341 to 97034365 24 - TSS region transcription start site region 123579
Tssr123580 13 97034367 to 97034382 15 - TSS region transcription start site region 123580
Tssr123581 13 97034384 to 97034388 4 - TSS region transcription start site region 123581
Tssr123582 13 97035282 to 97035295 13 - TSS region transcription start site region 123582
Tssr123583 13 97035300 to 97035309 9 - TSS region transcription start site region 123583
Tssr120749 13 97065604 to 97065611 7 + TSS region transcription start site region 120749
Tssr120750 13 97067266 to 97067281 15 + TSS region transcription start site region 120750
Fam169a 13 97067287 to 97130447 63160 + protein coding gene family with sequence similarity 169, member A
Cpgi5988 13 97070950 to 97072364 1414 CpG island CpG island 5988
Tssr120751 13 97071288 to 97071317 29 + TSS region transcription start site region 120751
Tssr120752 13 97071331 to 97071356 25 + TSS region transcription start site region 120752
Tssr120753 13 97071408 to 97071424 16 + TSS region transcription start site region 120753
Tssr120754 13 97071434 to 97071447 13 + TSS region transcription start site region 120754
Tssr120755 13 97071563 to 97071626 63 + TSS region transcription start site region 120755
Tssr120756 13 97071627 to 97071637 10 + TSS region transcription start site region 120756
Tssr120757 13 97073563 to 97073570 7 + TSS region transcription start site region 120757
Tssr120758 13 97088483 to 97088489 6 + TSS region transcription start site region 120758
Tssr120759 13 97088544 to 97088582 38 + TSS region transcription start site region 120759
Gm6169 13 97098208 to 97099237 1029 - pseudogene predicted gene 6169
Tssr120760 13 97128655 to 97128673 18 + TSS region transcription start site region 120760
Nsa2 13 97129427 to 97137926 8499 - protein coding gene NSA2 ribosome biogenesis homolog
Cpgi5989 13 97137502 to 97138347 845 CpG island CpG island 5989
Tssr123584 13 97137877 to 97137916 39 - TSS region transcription start site region 123584
Tssr123585 13 97137922 to 97137942 20 - TSS region transcription start site region 123585
Gfm2 13 97137937 to 97181195 43258 + protein coding gene G elongation factor, mitochondrial 2
Tssr120761 13 97137967 to 97138013 46 + TSS region transcription start site region 120761
Hexb 13 97176331 to 97198357 22026 - protein coding gene hexosaminidase B
Tssr120762 13 97190536 to 97190575 39 + TSS region transcription start site region 120762
Tssr123586 13 97190566 to 97190610 44 - TSS region transcription start site region 123586
Tssr123587 13 97190634 to 97190639 5 - TSS region transcription start site region 123587
Cpgi5990 13 97197805 to 97198564 759 CpG island CpG island 5990
Tssr123588 13 97198273 to 97198282 9 - TSS region transcription start site region 123588
Tssr123589 13 97198287 to 97198337 50 - TSS region transcription start site region 123589
Tssr123590 13 97198351 to 97198362 11 - TSS region transcription start site region 123590
Tssr120763 13 97199431 to 97199436 5 + TSS region transcription start site region 120763
Gm48881 13 97202247 to 97202975 728 - pseudogene predicted gene, 48881
Tssr123591 13 97202956 to 97202957 1 - TSS region transcription start site region 123591
Tssr123592 13 97207031 to 97207035 4 - TSS region transcription start site region 123592
Tssr123593 13 97207049 to 97207058 9 - TSS region transcription start site region 123593
Tssr123594 13 97207074 to 97207080 6 - TSS region transcription start site region 123594
Tssr123595 13 97207084 to 97207089 5 - TSS region transcription start site region 123595
Cpgi5991 13 97240253 to 97242212 1959 CpG island CpG island 5991
Tssr120764 13 97240447 to 97240465 18 + TSS region transcription start site region 120764
Tssr120765 13 97241096 to 97241116 20 + TSS region transcription start site region 120765
Enc1 13 97241105 to 97253034 11929 + protein coding gene ectodermal-neural cortex 1
Tssr120766 13 97241122 to 97241129 7 + TSS region transcription start site region 120766
Tssr120767 13 97241214 to 97241232 18 + TSS region transcription start site region 120767
Tssr120768 13 97241252 to 97241268 16 + TSS region transcription start site region 120768
Tssr120769 13 97242030 to 97242077 47 + TSS region transcription start site region 120769