Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:95085611-95575736

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde8b 13 95024454 to 95250336 225882 - protein coding gene phosphodiesterase 8B
Tssr123502 13 95165643 to 95165646 3 - TSS region transcription start site region 123502
Tssr120711 13 95176686 to 95176692 6 + TSS region transcription start site region 120711
D13Mit160 13 95197866 to 95198129 263 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 160
Gm16243 13 95208112 to 95208936 824 + antisense lncRNA gene predicted gene 16243
C030010F05Rik 13 95220326 to 95222348 2022 unclassified gene RIKEN cDNA C030010F05 gene
Cpgi5967 13 95222018 to 95223518 1500 CpG island CpG island 5967
Tssr123503 13 95222321 to 95222322 1 - TSS region transcription start site region 123503
Tssr123504 13 95223045 to 95223080 35 - TSS region transcription start site region 123504
Tssr123505 13 95223081 to 95223104 23 - TSS region transcription start site region 123505
Tssr123506 13 95223451 to 95223466 15 - TSS region transcription start site region 123506
Cpgi5968 13 95249724 to 95250437 713 CpG island CpG island 5968
Tssr123507 13 95250268 to 95250331 63 - TSS region transcription start site region 123507
Tssr123508 13 95255122 to 95255138 16 - TSS region transcription start site region 123508
Tssr120712 13 95323602 to 95323606 4 + TSS region transcription start site region 120712
Zbed3 13 95323612 to 95337841 14229 + protein coding gene zinc finger, BED type containing 3
Cpgi5969 13 95324669 to 95325739 1070 CpG island CpG island 5969
Tssr120713 13 95324814 to 95324874 60 + TSS region transcription start site region 120713
Tssr120714 13 95325142 to 95325159 17 + TSS region transcription start site region 120714
Tssr120715 13 95325169 to 95325189 20 + TSS region transcription start site region 120715
Tssr120716 13 95325195 to 95325229 34 + TSS region transcription start site region 120716
Tssr120717 13 95325258 to 95325300 42 + TSS region transcription start site region 120717
Tssr120718 13 95325876 to 95325879 3 + TSS region transcription start site region 120718
Tssr123509 13 95327491 to 95327504 13 - TSS region transcription start site region 123509
Mir1940 13 95330580 to 95330683 103 + miRNA gene microRNA 1940
Snora47 13 95330611 to 95330736 125 + snoRNA gene small nucleolar RNA, H/ACA box 47
Gm22661 13 95332618 to 95332749 131 + snoRNA gene predicted gene, 22661
Cpgi5970 13 95336093 to 95336686 593 CpG island CpG island 5970
Aggf1 13 95350683 to 95375352 24669 - protein coding gene angiogenic factor with G patch and FHA domains 1
Tssr123510 13 95368522 to 95368541 19 - TSS region transcription start site region 123510
Cpgi5971 13 95374430 to 95375524 1094 CpG island CpG island 5971
Tssr4143 13 95374886 to 95374898 12 - TSS region transcription start site region 4143
Tssr123511 13 95375305 to 95375321 16 - TSS region transcription start site region 123511
Tssr123512 13 95375329 to 95375369 40 - TSS region transcription start site region 123512
Gm48712 13 95421217 to 95421676 459 - pseudogene predicted gene, 48712
Crhbp 13 95431376 to 95444831 13455 - protein coding gene corticotropin releasing hormone binding protein
Cpgi5972 13 95443465 to 95444272 807 CpG island CpG island 5972
Tssr123513 13 95444700 to 95444711 11 - TSS region transcription start site region 123513
Tssr123514 13 95444763 to 95444777 14 - TSS region transcription start site region 123514
Tssr123515 13 95444827 to 95444841 14 - TSS region transcription start site region 123515
Tssr123516 13 95444886 to 95444898 12 - TSS region transcription start site region 123516
Cpgi5973 13 95468576 to 95468930 354 CpG island CpG island 5973
S100z 13 95477301 to 95478655 1354 - protein coding gene S100 calcium binding protein, zeta
F2rl1 13 95511732 to 95525227 13495 - protein coding gene coagulation factor II (thrombin) receptor-like 1
Cpgi5974 13 95524263 to 95525486 1223 CpG island CpG island 5974
Tssr123517 13 95525180 to 95525191 11 - TSS region transcription start site region 123517
Tssr123518 13 95525218 to 95525232 14 - TSS region transcription start site region 123518
Tssr123519 13 95525239 to 95525252 13 - TSS region transcription start site region 123519
Tssr123520 13 95525285 to 95525292 7 - TSS region transcription start site region 123520
Tssr123521 13 95531798 to 95531802 4 - TSS region transcription start site region 123521
Tssr120719 13 95531914 to 95531923 9 + TSS region transcription start site region 120719
Tssr123522 13 95534162 to 95534205 43 - TSS region transcription start site region 123522
Gm48730 13 95535590 to 95545200 9610 + lincRNA gene predicted gene, 48730
Gm32640 13 95544861 to 95548820 3959 - lncRNA gene predicted gene, 32640
Cpgi5975 13 95548530 to 95548727 197 CpG island CpG island 5975
D13Mit104.2 13 95556303 to 95556446 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 104.2
D13Mit104 13 95556424 to 95556548 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 104