Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:94378479-96858498

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257 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq5 13 35876925 to 96102654 60225729 QTL spontaneous crescentic glomerulonephritis QTL 5
Cia28 13 56481436 to 96102654 39621218 QTL collagen induced arthritis QTL 28
Dps1 13 77047743 to 95594386 18546643 QTL delta power in slow-wave sleep 1
Ap3b1 13 94358960 to 94566317 207357 + protein coding gene adaptor-related protein complex 3, beta 1 subunit
Tssr120688 13 94388881 to 94388898 17 + TSS region transcription start site region 120688
Tssr120689 13 94390689 to 94390701 12 + TSS region transcription start site region 120689
Tssr120690 13 94394730 to 94394748 18 + TSS region transcription start site region 120690
Tssr120691 13 94404033 to 94404050 17 + TSS region transcription start site region 120691
Tssr120692 13 94407837 to 94407843 6 + TSS region transcription start site region 120692
Tssr120693 13 94462475 to 94462494 19 + TSS region transcription start site region 120693
D13Mit299 13 94465783 to 94465930 147 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-299
Gm25109 13 94517162 to 94517275 113 + miRNA gene predicted gene, 25109
Tssr120694 13 94520760 to 94520774 14 + TSS region transcription start site region 120694
Tssr4142 13 94548341 to 94548344 3 - TSS region transcription start site region 4142
Tssr120695 13 94548432 to 94548439 7 + TSS region transcription start site region 120695
Cpgi5953 13 94595763 to 94596313 550 CpG island CpG island 5953
Cpgi5954 13 94601551 to 94601813 262 CpG island CpG island 5954
Gm36991 13 94619280 to 94619927 647 + unclassified gene predicted gene, 36991
D13Mit108 13 94637484 to 94637619 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 108
Gm48287 13 94645899 to 94647344 1445 - lincRNA gene predicted gene, 48287
Gm32305 13 94685599 to 94696541 10942 - lincRNA gene predicted gene, 32305
Gm32351 13 94701018 to 94702718 1700 - lincRNA gene predicted gene, 32351
Cpgi5955 13 94702589 to 94703424 835 CpG island CpG island 5955
Cpgi5956 13 94707876 to 94708223 347 CpG island CpG island 5956
Cpgi5957 13 94709802 to 94711015 1213 CpG island CpG island 5957
Tssr120696 13 94731888 to 94731931 43 + TSS region transcription start site region 120696
Gm48316 13 94752270 to 94752593 323 + pseudogene predicted gene, 48316
Gm46389 13 94754202 to 94754593 391 - pseudogene predicted gene, 46389
Cpgi5958 13 94788727 to 94789598 871 CpG island CpG island 5958
Tssr120697 13 94788873 to 94788951 78 + TSS region transcription start site region 120697
Tbca 13 94788943 to 94842899 53956 + protein coding gene tubulin cofactor A
Tssr123494 13 94789267 to 94789269 2 - TSS region transcription start site region 123494
Tssr120698 13 94817694 to 94817711 17 + TSS region transcription start site region 120698
Tssr120699 13 94826998 to 94827006 8 + TSS region transcription start site region 120699
D13Mit169 13 94866182 to 94866327 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 169
Cpgi5959 13 94868419 to 94869714 1295 CpG island CpG island 5959
Cpgi5960 13 94872632 to 94872805 173 CpG island CpG island 5960
Cpgi5961 13 94873118 to 94874024 906 CpG island CpG island 5961
D13Mit258 13 94874002 to 94874115 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 258
Cpgi5962 13 94875107 to 94875524 417 CpG island CpG island 5962
Tssr120700 13 94875600 to 94875611 11 + TSS region transcription start site region 120700
Tssr120701 13 94875625 to 94875643 18 + TSS region transcription start site region 120701
Otp 13 94875627 to 94885125 9498 + protein coding gene orthopedia homeobox
Tssr120702 13 94875653 to 94875661 8 + TSS region transcription start site region 120702
Tssr120703 13 94876648 to 94876657 9 + TSS region transcription start site region 120703
Cpgi5963 13 94876869 to 94877689 820 CpG island CpG island 5963
Cpgi5964 13 94882634 to 94884510 1876 CpG island CpG island 5964
Cpgi5965 13 94885152 to 94886064 912 CpG island CpG island 5965
V125Dq10 13 94900000 to 94900000 0 QTL vitamin D active form serum level QTL 10
Tssr120704 13 94957391 to 94957393 2 + TSS region transcription start site region 120704
Cpgi5966 13 94975989 to 94976685 696 CpG island CpG island 5966
Wdr41 13 94976344 to 95023314 46970 + protein coding gene WD repeat domain 41
Tssr120705 13 94976364 to 94976422 58 + TSS region transcription start site region 120705
Tssr120706 13 94976435 to 94976452 17 + TSS region transcription start site region 120706
Tssr120707 13 94976455 to 94976475 20 + TSS region transcription start site region 120707
Gm41024 13 94978597 to 94982413 3816 + lncRNA gene predicted gene, 41024
Gm48349 13 95002358 to 95002824 466 + pseudogene predicted gene, 48349
Tssr120708 13 95009982 to 95009990 8 + TSS region transcription start site region 120708
Tssr120709 13 95010010 to 95010028 18 + TSS region transcription start site region 120709
Gm48350 13 95012681 to 95023790 11109 - antisense lncRNA gene predicted gene, 48350
Tssr120710 13 95021826 to 95021863 37 + TSS region transcription start site region 120710
Gm48420 13 95024301 to 95024900 599 + antisense lncRNA gene predicted gene, 48420
Pde8b 13 95024454 to 95250336 225882 - protein coding gene phosphodiesterase 8B
Tssr123495 13 95034247 to 95034288 41 - TSS region transcription start site region 123495
Tssr123496 13 95034289 to 95034316 27 - TSS region transcription start site region 123496
Tssr123497 13 95038324 to 95038332 8 - TSS region transcription start site region 123497
Tssr123498 13 95049404 to 95049416 12 - TSS region transcription start site region 123498
Tssr123499 13 95050566 to 95050569 3 - TSS region transcription start site region 123499
Tssr123500 13 95052998 to 95053002 4 - TSS region transcription start site region 123500
Gm41025 13 95058837 to 95071701 12864 + lncRNA gene predicted gene, 41025
Tssr123501 13 95059098 to 95059116 18 - TSS region transcription start site region 123501
Tssr123502 13 95165643 to 95165646 3 - TSS region transcription start site region 123502
Tssr120711 13 95176686 to 95176692 6 + TSS region transcription start site region 120711
D13Mit160 13 95197866 to 95198129 263 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 160
Gm16243 13 95208112 to 95208936 824 + antisense lncRNA gene predicted gene 16243
C030010F05Rik 13 95220326 to 95222348 2022 unclassified gene RIKEN cDNA C030010F05 gene
Cpgi5967 13 95222018 to 95223518 1500 CpG island CpG island 5967
Tssr123503 13 95222321 to 95222322 1 - TSS region transcription start site region 123503
Tssr123504 13 95223045 to 95223080 35 - TSS region transcription start site region 123504
Tssr123505 13 95223081 to 95223104 23 - TSS region transcription start site region 123505
Tssr123506 13 95223451 to 95223466 15 - TSS region transcription start site region 123506
Cpgi5968 13 95249724 to 95250437 713 CpG island CpG island 5968
Tssr123507 13 95250268 to 95250331 63 - TSS region transcription start site region 123507
Tssr123508 13 95255122 to 95255138 16 - TSS region transcription start site region 123508
Tssr120712 13 95323602 to 95323606 4 + TSS region transcription start site region 120712
Zbed3 13 95323612 to 95337841 14229 + protein coding gene zinc finger, BED type containing 3
Cpgi5969 13 95324669 to 95325739 1070 CpG island CpG island 5969
Tssr120713 13 95324814 to 95324874 60 + TSS region transcription start site region 120713
Tssr120714 13 95325142 to 95325159 17 + TSS region transcription start site region 120714
Tssr120715 13 95325169 to 95325189 20 + TSS region transcription start site region 120715
Tssr120716 13 95325195 to 95325229 34 + TSS region transcription start site region 120716
Tssr120717 13 95325258 to 95325300 42 + TSS region transcription start site region 120717
Tssr120718 13 95325876 to 95325879 3 + TSS region transcription start site region 120718
Tssr123509 13 95327491 to 95327504 13 - TSS region transcription start site region 123509
Mir1940 13 95330580 to 95330683 103 + miRNA gene microRNA 1940
Snora47 13 95330611 to 95330736 125 + snoRNA gene small nucleolar RNA, H/ACA box 47
Gm22661 13 95332618 to 95332749 131 + snoRNA gene predicted gene, 22661
Cpgi5970 13 95336093 to 95336686 593 CpG island CpG island 5970
Aggf1 13 95350683 to 95375352 24669 - protein coding gene angiogenic factor with G patch and FHA domains 1
Tssr123510 13 95368522 to 95368541 19 - TSS region transcription start site region 123510
Cpgi5971 13 95374430 to 95375524 1094 CpG island CpG island 5971
Tssr4143 13 95374886 to 95374898 12 - TSS region transcription start site region 4143
Tssr123511 13 95375305 to 95375321 16 - TSS region transcription start site region 123511
Tssr123512 13 95375329 to 95375369 40 - TSS region transcription start site region 123512
Gm48712 13 95421217 to 95421676 459 - pseudogene predicted gene, 48712
Crhbp 13 95431376 to 95444831 13455 - protein coding gene corticotropin releasing hormone binding protein
Cpgi5972 13 95443465 to 95444272 807 CpG island CpG island 5972
Tssr123513 13 95444700 to 95444711 11 - TSS region transcription start site region 123513
Tssr123514 13 95444763 to 95444777 14 - TSS region transcription start site region 123514
Tssr123515 13 95444827 to 95444841 14 - TSS region transcription start site region 123515
Tssr123516 13 95444886 to 95444898 12 - TSS region transcription start site region 123516
Cpgi5973 13 95468576 to 95468930 354 CpG island CpG island 5973
S100z 13 95477301 to 95478655 1354 - protein coding gene S100 calcium binding protein, zeta
F2rl1 13 95511732 to 95525227 13495 - protein coding gene coagulation factor II (thrombin) receptor-like 1
Cpgi5974 13 95524263 to 95525486 1223 CpG island CpG island 5974
Tssr123517 13 95525180 to 95525191 11 - TSS region transcription start site region 123517
Tssr123518 13 95525218 to 95525232 14 - TSS region transcription start site region 123518
Tssr123519 13 95525239 to 95525252 13 - TSS region transcription start site region 123519
Tssr123520 13 95525285 to 95525292 7 - TSS region transcription start site region 123520
Tssr123521 13 95531798 to 95531802 4 - TSS region transcription start site region 123521
Tssr120719 13 95531914 to 95531923 9 + TSS region transcription start site region 120719
Tssr123522 13 95534162 to 95534205 43 - TSS region transcription start site region 123522
Gm48730 13 95535590 to 95545200 9610 + lincRNA gene predicted gene, 48730
Gm32640 13 95544861 to 95548820 3959 - lncRNA gene predicted gene, 32640
Cpgi5975 13 95548530 to 95548727 197 CpG island CpG island 5975
D13Mit104.2 13 95556303 to 95556446 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 104.2
D13Mit104 13 95556424 to 95556548 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 104
Gm48731 13 95578292 to 95578976 684 - pseudogene predicted gene, 48731
D13Mit107.1 13 95594150 to 95594275 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 107.1
D13Mit107 13 95594238 to 95594386 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 107
F2r 13 95601789 to 95618433 16644 - protein coding gene coagulation factor II (thrombin) receptor
Cpgi5976 13 95603886 to 95604797 911 CpG island CpG island 5976
Tssr123523 13 95604688 to 95604714 26 - TSS region transcription start site region 123523
Tssr123524 13 95604903 to 95604913 10 - TSS region transcription start site region 123524
Cpgi5977 13 95617972 to 95618812 840 CpG island CpG island 5977
Tssr123525 13 95618419 to 95618435 16 - TSS region transcription start site region 123525
Tssr123526 13 95618442 to 95618475 33 - TSS region transcription start site region 123526
Tssr123527 13 95618479 to 95618498 19 - TSS region transcription start site region 123527
Tssr123528 13 95618662 to 95618669 7 - TSS region transcription start site region 123528
Iqgap2 13 95627177 to 95891922 264745 - protein coding gene IQ motif containing GTPase activating protein 2
Tssr123529 13 95659340 to 95659347 7 - TSS region transcription start site region 123529
Tssr123530 13 95659647 to 95659650 3 - TSS region transcription start site region 123530
Tssr123531 13 95671429 to 95671445 16 - TSS region transcription start site region 123531
Tssr123532 13 95671471 to 95671535 64 - TSS region transcription start site region 123532
Tssr123533 13 95671538 to 95671584 46 - TSS region transcription start site region 123533
Gm33074 13 95672136 to 95680237 8101 + lncRNA gene predicted gene, 33074
Gm48745 13 95685145 to 95686809 1664 + unclassified gene predicted gene, 48745
Tssr123534 13 95685825 to 95685865 40 - TSS region transcription start site region 123534
Tssr120720 13 95696851 to 95696869 18 + TSS region transcription start site region 120720
Tssr120721 13 95696895 to 95696921 26 + TSS region transcription start site region 120721
F2rl2 13 95696920 to 95702768 5848 + protein coding gene coagulation factor II (thrombin) receptor-like 2
Tssr120722 13 95696932 to 95696979 47 + TSS region transcription start site region 120722
Tssr120723 13 95707467 to 95707489 22 + TSS region transcription start site region 120723
Tssr120724 13 95711165 to 95711166 1 + TSS region transcription start site region 120724
Gm32702 13 95763409 to 95777960 14551 + lncRNA gene predicted gene, 32702
Tssr120725 13 95765121 to 95765138 17 + TSS region transcription start site region 120725
Tssr120726 13 95765325 to 95765364 39 + TSS region transcription start site region 120726
D13Mit320 13 95778268 to 95778558 290 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-320
D13Mit145 13 95824704 to 95824847 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 145
Tssr120727 13 95845239 to 95845253 14 + TSS region transcription start site region 120727
Tssr123535 13 95883403 to 95883410 7 - TSS region transcription start site region 123535
Tssr123536 13 95884055 to 95884060 5 - TSS region transcription start site region 123536
Tssr123537 13 95889373 to 95889377 4 - TSS region transcription start site region 123537
Cpgi5978 13 95890855 to 95892602 1747 CpG island CpG island 5978
Tssr123538 13 95891714 to 95891733 19 - TSS region transcription start site region 123538
Tssr123539 13 95891881 to 95891902 21 - TSS region transcription start site region 123539
Tssr123540 13 95891905 to 95891929 24 - TSS region transcription start site region 123540
Tssr123541 13 95892199 to 95892213 14 - TSS region transcription start site region 123541
Tssr123542 13 95892279 to 95892286 7 - TSS region transcription start site region 123542
Tssr123543 13 95892502 to 95892519 17 - TSS region transcription start site region 123543
Tssr120728 13 95893462 to 95893508 46 + TSS region transcription start site region 120728
Gm24032 13 95896962 to 95897120 158 - snRNA gene predicted gene, 24032
Tssr123544 13 95897115 to 95897120 5 - TSS region transcription start site region 123544
Tssr123545 13 95912554 to 95912567 13 - TSS region transcription start site region 123545
Tssr123546 13 95912587 to 95912610 23 - TSS region transcription start site region 123546
Tssr4144 13 95918495 to 95918504 9 - TSS region transcription start site region 4144
Tssr123547 13 95957610 to 95957612 2 - TSS region transcription start site region 123547
Sv2c 13 95959443 to 96132577 173134 - protein coding gene synaptic vesicle glycoprotein 2c
Tssr120729 13 95960656 to 95960670 14 + TSS region transcription start site region 120729
Cpgi5979 13 95961230 to 95961679 449 CpG island CpG island 5979
Tssr123548 13 95961485 to 95961494 9 - TSS region transcription start site region 123548
Tssr123549 13 95961577 to 95961587 10 - TSS region transcription start site region 123549
Tssr123550 13 95961653 to 95961672 19 - TSS region transcription start site region 123550
D13Ertd324e 13 95983174 to 95983396 222 DNA segment DNA segment, Chr 13, ERATO Doi 324, expressed
Tssr120730 13 95988421 to 95988437 16 + TSS region transcription start site region 120730
Cpgi5980 13 95989690 to 95990106 416 CpG island CpG island 5980
Tssr123551 13 96011034 to 96011042 8 - TSS region transcription start site region 123551
Tssr120731 13 96011515 to 96011523 8 + TSS region transcription start site region 120731
Gm20075 13 96079233 to 96081375 2142 - pseudogene predicted gene, 20075
Tssr123552 13 96081278 to 96081302 24 - TSS region transcription start site region 123552
Tssr123553 13 96081363 to 96081376 13 - TSS region transcription start site region 123553
Gm17190 13 96082057 to 96082970 913 + pseudogene predicted gene 17190
Heal18 13 96102537 to 96102654 117 QTL wound healing regeneration 18
D13Mit144 13 96102537 to 96102654 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 144
Gm23955 13 96104463 to 96104562 99 - snRNA gene predicted gene, 23955
Cpgi5981 13 96131000 to 96133762 2762 CpG island CpG island 5981
Tssr123554 13 96132521 to 96132530 9 - TSS region transcription start site region 123554
Tssr123555 13 96132543 to 96132567 24 - TSS region transcription start site region 123555
Tssr123556 13 96132568 to 96132628 60 - TSS region transcription start site region 123556
Tssr123557 13 96132669 to 96132687 18 - TSS region transcription start site region 123557