Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:94216018-95187718

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scamp1 13 94201433 to 94285826 84393 - protein coding gene secretory carrier membrane protein 1
Tssr120676 13 94223604 to 94223615 11 + TSS region transcription start site region 120676
Tssr120677 13 94224878 to 94224893 15 + TSS region transcription start site region 120677
1700042D18Rik 13 94224889 to 94226024 1135 unclassified gene RIKEN cDNA 1700042D18 gene
Tssr120678 13 94224914 to 94224928 14 + TSS region transcription start site region 120678
Tssr123476 13 94245573 to 94245585 12 - TSS region transcription start site region 123476
Tssr123477 13 94246532 to 94246573 41 - TSS region transcription start site region 123477
Tssr123478 13 94246581 to 94246596 15 - TSS region transcription start site region 123478
Tssr123479 13 94253040 to 94253070 30 - TSS region transcription start site region 123479
Tssr123480 13 94258686 to 94258706 20 - TSS region transcription start site region 123480
Tssr123481 13 94279047 to 94279051 4 - TSS region transcription start site region 123481
Cpgi5951 13 94284404 to 94285950 1546 CpG island CpG island 5951
Tssr123482 13 94285281 to 94285342 61 - TSS region transcription start site region 123482
Tssr123483 13 94285352 to 94285441 89 - TSS region transcription start site region 123483
Tssr120679 13 94285477 to 94285492 15 + TSS region transcription start site region 120679
Tssr123484 13 94285893 to 94285901 8 - TSS region transcription start site region 123484
Tssr123485 13 94285993 to 94286020 27 - TSS region transcription start site region 123485
Gm32089 13 94289448 to 94295006 5558 - lincRNA gene predicted gene, 32089
Gm48102 13 94294017 to 94301250 7233 + lincRNA gene predicted gene, 48102
Tssr120680 13 94294042 to 94294052 10 + TSS region transcription start site region 120680
Tssr123486 13 94294967 to 94294985 18 - TSS region transcription start site region 123486
Tssr123487 13 94294993 to 94295010 17 - TSS region transcription start site region 123487
Tssr123488 13 94295019 to 94295036 17 - TSS region transcription start site region 123488
Tssr123489 13 94295048 to 94295059 11 - TSS region transcription start site region 123489
Tssr123490 13 94295061 to 94295072 11 - TSS region transcription start site region 123490
Tssr120681 13 94295261 to 94295272 11 + TSS region transcription start site region 120681
Gm5668 13 94299424 to 94299859 435 - pseudogene predicted gene 5668
Tssr120682 13 94301454 to 94301483 29 + TSS region transcription start site region 120682
Gm38653 13 94303169 to 94306838 3669 - lncRNA gene predicted gene, 38653
Gm41022 13 94306850 to 94310297 3447 + lncRNA gene predicted gene, 41022
Tssr123491 13 94328104 to 94328108 4 - TSS region transcription start site region 123491
Gm9776 13 94356747 to 94358923 2176 - bidirectional promoter lncRNA gene predicted gene 9776
Tssr123492 13 94357505 to 94357521 16 - TSS region transcription start site region 123492
Cpgi5952 13 94358212 to 94359516 1304 CpG island CpG island 5952
Tssr123493 13 94358892 to 94358931 39 - TSS region transcription start site region 123493
Tssr120683 13 94358943 to 94359055 112 + TSS region transcription start site region 120683
Ap3b1 13 94358960 to 94566317 207357 + protein coding gene adaptor-related protein complex 3, beta 1 subunit
Tssr120684 13 94359056 to 94359097 41 + TSS region transcription start site region 120684
Tssr120685 13 94359104 to 94359115 11 + TSS region transcription start site region 120685
Tssr120686 13 94359453 to 94359467 14 + TSS region transcription start site region 120686
Tssr120687 13 94359480 to 94359500 20 + TSS region transcription start site region 120687
Tssr120688 13 94388881 to 94388898 17 + TSS region transcription start site region 120688
Tssr120689 13 94390689 to 94390701 12 + TSS region transcription start site region 120689
Tssr120690 13 94394730 to 94394748 18 + TSS region transcription start site region 120690
Tssr120691 13 94404033 to 94404050 17 + TSS region transcription start site region 120691
Tssr120692 13 94407837 to 94407843 6 + TSS region transcription start site region 120692
Tssr120693 13 94462475 to 94462494 19 + TSS region transcription start site region 120693
D13Mit299 13 94465783 to 94465930 147 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-299
Gm25109 13 94517162 to 94517275 113 + miRNA gene predicted gene, 25109
Tssr120694 13 94520760 to 94520774 14 + TSS region transcription start site region 120694
Tssr4142 13 94548341 to 94548344 3 - TSS region transcription start site region 4142
Tssr120695 13 94548432 to 94548439 7 + TSS region transcription start site region 120695
Cpgi5953 13 94595763 to 94596313 550 CpG island CpG island 5953
Cpgi5954 13 94601551 to 94601813 262 CpG island CpG island 5954
Gm36991 13 94619280 to 94619927 647 + unclassified gene predicted gene, 36991
D13Mit108 13 94637484 to 94637619 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 108
Gm48287 13 94645899 to 94647344 1445 - lincRNA gene predicted gene, 48287
Gm32305 13 94685599 to 94696541 10942 - lincRNA gene predicted gene, 32305
Gm32351 13 94701018 to 94702718 1700 - lincRNA gene predicted gene, 32351
Cpgi5955 13 94702589 to 94703424 835 CpG island CpG island 5955
Cpgi5956 13 94707876 to 94708223 347 CpG island CpG island 5956
Cpgi5957 13 94709802 to 94711015 1213 CpG island CpG island 5957
Tssr120696 13 94731888 to 94731931 43 + TSS region transcription start site region 120696
Gm48316 13 94752270 to 94752593 323 + pseudogene predicted gene, 48316
Gm46389 13 94754202 to 94754593 391 - pseudogene predicted gene, 46389
Cpgi5958 13 94788727 to 94789598 871 CpG island CpG island 5958
Tssr120697 13 94788873 to 94788951 78 + TSS region transcription start site region 120697
Tbca 13 94788943 to 94842899 53956 + protein coding gene tubulin cofactor A
Tssr123494 13 94789267 to 94789269 2 - TSS region transcription start site region 123494
Tssr120698 13 94817694 to 94817711 17 + TSS region transcription start site region 120698
Tssr120699 13 94826998 to 94827006 8 + TSS region transcription start site region 120699
D13Mit169 13 94866182 to 94866327 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 169
Cpgi5959 13 94868419 to 94869714 1295 CpG island CpG island 5959
Cpgi5960 13 94872632 to 94872805 173 CpG island CpG island 5960
Cpgi5961 13 94873118 to 94874024 906 CpG island CpG island 5961
D13Mit258 13 94874002 to 94874115 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 258
Cpgi5962 13 94875107 to 94875524 417 CpG island CpG island 5962
Tssr120700 13 94875600 to 94875611 11 + TSS region transcription start site region 120700
Tssr120701 13 94875625 to 94875643 18 + TSS region transcription start site region 120701
Otp 13 94875627 to 94885125 9498 + protein coding gene orthopedia homeobox
Tssr120702 13 94875653 to 94875661 8 + TSS region transcription start site region 120702
Tssr120703 13 94876648 to 94876657 9 + TSS region transcription start site region 120703
Cpgi5963 13 94876869 to 94877689 820 CpG island CpG island 5963
Cpgi5964 13 94882634 to 94884510 1876 CpG island CpG island 5964
Cpgi5965 13 94885152 to 94886064 912 CpG island CpG island 5965
V125Dq10 13 94900000 to 94900000 0 QTL vitamin D active form serum level QTL 10
Tssr120704 13 94957391 to 94957393 2 + TSS region transcription start site region 120704
Cpgi5966 13 94975989 to 94976685 696 CpG island CpG island 5966
Wdr41 13 94976344 to 95023314 46970 + protein coding gene WD repeat domain 41
Tssr120705 13 94976364 to 94976422 58 + TSS region transcription start site region 120705
Tssr120706 13 94976435 to 94976452 17 + TSS region transcription start site region 120706
Tssr120707 13 94976455 to 94976475 20 + TSS region transcription start site region 120707
Gm41024 13 94978597 to 94982413 3816 + lncRNA gene predicted gene, 41024
Gm48349 13 95002358 to 95002824 466 + pseudogene predicted gene, 48349
Tssr120708 13 95009982 to 95009990 8 + TSS region transcription start site region 120708
Tssr120709 13 95010010 to 95010028 18 + TSS region transcription start site region 120709
Gm48350 13 95012681 to 95023790 11109 - antisense lncRNA gene predicted gene, 48350
Tssr120710 13 95021826 to 95021863 37 + TSS region transcription start site region 120710
Gm48420 13 95024301 to 95024900 599 + antisense lncRNA gene predicted gene, 48420
Pde8b 13 95024454 to 95250336 225882 - protein coding gene phosphodiesterase 8B
Tssr123495 13 95034247 to 95034288 41 - TSS region transcription start site region 123495
Tssr123496 13 95034289 to 95034316 27 - TSS region transcription start site region 123496
Tssr123497 13 95038324 to 95038332 8 - TSS region transcription start site region 123497
Tssr123498 13 95049404 to 95049416 12 - TSS region transcription start site region 123498
Tssr123499 13 95050566 to 95050569 3 - TSS region transcription start site region 123499
Tssr123500 13 95052998 to 95053002 4 - TSS region transcription start site region 123500
Gm41025 13 95058837 to 95071701 12864 + lncRNA gene predicted gene, 41025
Tssr123501 13 95059098 to 95059116 18 - TSS region transcription start site region 123501
Tssr123502 13 95165643 to 95165646 3 - TSS region transcription start site region 123502
Tssr120711 13 95176686 to 95176692 6 + TSS region transcription start site region 120711