Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:93753212-94964516

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41021 13 93754998 to 93758525 3527 + lncRNA gene predicted gene, 41021
Gm47210 13 93770950 to 93772194 1244 - bidirectional promoter lncRNA gene predicted gene, 47210
Cpgi5947 13 93771269 to 93772403 1134 CpG island CpG island 5947
Tssr120658 13 93771656 to 93771702 46 + TSS region transcription start site region 120658
Arsb 13 93771679 to 93943016 171337 + protein coding gene arylsulfatase B
Tssr120659 13 93771716 to 93771731 15 + TSS region transcription start site region 120659
Mir5624 13 93790777 to 93790837 60 + miRNA gene microRNA 5624
Tssr120660 13 93808462 to 93808471 9 + TSS region transcription start site region 120660
Tssr120661 13 93841479 to 93841484 5 + TSS region transcription start site region 120661
Cpgi5948 13 93855982 to 93856153 171 CpG island CpG island 5948
Gm25534 13 93923187 to 93923311 124 - miRNA gene predicted gene, 25534
Gm26527 13 93940990 to 93943015 2025 - lincRNA gene predicted gene, 26527
Gm24737 13 93956310 to 93956409 99 + snRNA gene predicted gene, 24737
Gm47216 13 93983195 to 93991768 8573 - lincRNA gene predicted gene, 47216
Cycs-ps3 13 94053843 to 94054388 545 + pseudogene cytochrome c, pseudogene 3
D13Mit28 13 94054637 to 94054799 162 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 28
Cpgi5949 13 94057220 to 94058307 1087 CpG island CpG island 5949
Tssr120662 13 94057663 to 94057686 23 + TSS region transcription start site region 120662
Tssr120663 13 94057757 to 94057838 81 + TSS region transcription start site region 120663
Lhfpl2 13 94057796 to 94195409 137613 + protein coding gene lipoma HMGIC fusion partner-like 2
Tssr120664 13 94068551 to 94068556 5 + TSS region transcription start site region 120664
Tssr120665 13 94083426 to 94083431 5 + TSS region transcription start site region 120665
Tssr120666 13 94083490 to 94083500 10 + TSS region transcription start site region 120666
Tssr120667 13 94130753 to 94130766 13 + TSS region transcription start site region 120667
Tssr120668 13 94130771 to 94130780 9 + TSS region transcription start site region 120668
Gm15907 13 94137447 to 94140117 2670 - lincRNA gene predicted gene 15907
Tssr123473 13 94154587 to 94154636 49 - TSS region transcription start site region 123473
Tssr123474 13 94155695 to 94155701 6 - TSS region transcription start site region 123474
Tssr120669 13 94167191 to 94167192 1 + TSS region transcription start site region 120669
Tssr120670 13 94169624 to 94169646 22 + TSS region transcription start site region 120670
Cpgi5950 13 94173703 to 94174702 999 CpG island CpG island 5950
Tssr120671 13 94173995 to 94174027 32 + TSS region transcription start site region 120671
Tssr120672 13 94174042 to 94174061 19 + TSS region transcription start site region 120672
Tssr120673 13 94176760 to 94176762 2 + TSS region transcription start site region 120673
Tssr120674 13 94192071 to 94192083 12 + TSS region transcription start site region 120674
Tssr120675 13 94194313 to 94194320 7 + TSS region transcription start site region 120675
Scamp1 13 94201433 to 94285826 84393 - protein coding gene secretory carrier membrane protein 1
Tssr123475 13 94203583 to 94203611 28 - TSS region transcription start site region 123475
Tssr120676 13 94223604 to 94223615 11 + TSS region transcription start site region 120676
Tssr120677 13 94224878 to 94224893 15 + TSS region transcription start site region 120677
1700042D18Rik 13 94224889 to 94226024 1135 unclassified gene RIKEN cDNA 1700042D18 gene
Tssr120678 13 94224914 to 94224928 14 + TSS region transcription start site region 120678
Tssr123476 13 94245573 to 94245585 12 - TSS region transcription start site region 123476
Tssr123477 13 94246532 to 94246573 41 - TSS region transcription start site region 123477
Tssr123478 13 94246581 to 94246596 15 - TSS region transcription start site region 123478
Tssr123479 13 94253040 to 94253070 30 - TSS region transcription start site region 123479
Tssr123480 13 94258686 to 94258706 20 - TSS region transcription start site region 123480
Tssr123481 13 94279047 to 94279051 4 - TSS region transcription start site region 123481
Cpgi5951 13 94284404 to 94285950 1546 CpG island CpG island 5951
Tssr123482 13 94285281 to 94285342 61 - TSS region transcription start site region 123482
Tssr123483 13 94285352 to 94285441 89 - TSS region transcription start site region 123483
Tssr120679 13 94285477 to 94285492 15 + TSS region transcription start site region 120679
Tssr123484 13 94285893 to 94285901 8 - TSS region transcription start site region 123484
Tssr123485 13 94285993 to 94286020 27 - TSS region transcription start site region 123485
Gm32089 13 94289448 to 94295006 5558 - lincRNA gene predicted gene, 32089
Gm48102 13 94294017 to 94301250 7233 + lincRNA gene predicted gene, 48102
Tssr120680 13 94294042 to 94294052 10 + TSS region transcription start site region 120680
Tssr123486 13 94294967 to 94294985 18 - TSS region transcription start site region 123486
Tssr123487 13 94294993 to 94295010 17 - TSS region transcription start site region 123487
Tssr123488 13 94295019 to 94295036 17 - TSS region transcription start site region 123488
Tssr123489 13 94295048 to 94295059 11 - TSS region transcription start site region 123489
Tssr123490 13 94295061 to 94295072 11 - TSS region transcription start site region 123490
Tssr120681 13 94295261 to 94295272 11 + TSS region transcription start site region 120681
Gm5668 13 94299424 to 94299859 435 - pseudogene predicted gene 5668
Tssr120682 13 94301454 to 94301483 29 + TSS region transcription start site region 120682
Gm38653 13 94303169 to 94306838 3669 - lncRNA gene predicted gene, 38653
Gm41022 13 94306850 to 94310297 3447 + lncRNA gene predicted gene, 41022
Tssr123491 13 94328104 to 94328108 4 - TSS region transcription start site region 123491
Gm9776 13 94356747 to 94358923 2176 - bidirectional promoter lncRNA gene predicted gene 9776
Tssr123492 13 94357505 to 94357521 16 - TSS region transcription start site region 123492
Cpgi5952 13 94358212 to 94359516 1304 CpG island CpG island 5952
Tssr123493 13 94358892 to 94358931 39 - TSS region transcription start site region 123493
Tssr120683 13 94358943 to 94359055 112 + TSS region transcription start site region 120683
Ap3b1 13 94358960 to 94566317 207357 + protein coding gene adaptor-related protein complex 3, beta 1 subunit
Tssr120684 13 94359056 to 94359097 41 + TSS region transcription start site region 120684
Tssr120685 13 94359104 to 94359115 11 + TSS region transcription start site region 120685
Tssr120686 13 94359453 to 94359467 14 + TSS region transcription start site region 120686
Tssr120687 13 94359480 to 94359500 20 + TSS region transcription start site region 120687
Tssr120688 13 94388881 to 94388898 17 + TSS region transcription start site region 120688
Tssr120689 13 94390689 to 94390701 12 + TSS region transcription start site region 120689
Tssr120690 13 94394730 to 94394748 18 + TSS region transcription start site region 120690
Tssr120691 13 94404033 to 94404050 17 + TSS region transcription start site region 120691
Tssr120692 13 94407837 to 94407843 6 + TSS region transcription start site region 120692
Tssr120693 13 94462475 to 94462494 19 + TSS region transcription start site region 120693
D13Mit299 13 94465783 to 94465930 147 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-299
Gm25109 13 94517162 to 94517275 113 + miRNA gene predicted gene, 25109
Tssr120694 13 94520760 to 94520774 14 + TSS region transcription start site region 120694
Tssr4142 13 94548341 to 94548344 3 - TSS region transcription start site region 4142
Tssr120695 13 94548432 to 94548439 7 + TSS region transcription start site region 120695
Cpgi5953 13 94595763 to 94596313 550 CpG island CpG island 5953
Cpgi5954 13 94601551 to 94601813 262 CpG island CpG island 5954
Gm36991 13 94619280 to 94619927 647 + unclassified gene predicted gene, 36991
D13Mit108 13 94637484 to 94637619 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 108
Gm48287 13 94645899 to 94647344 1445 - lincRNA gene predicted gene, 48287
Gm32305 13 94685599 to 94696541 10942 - lincRNA gene predicted gene, 32305
Gm32351 13 94701018 to 94702718 1700 - lincRNA gene predicted gene, 32351
Cpgi5955 13 94702589 to 94703424 835 CpG island CpG island 5955
Cpgi5956 13 94707876 to 94708223 347 CpG island CpG island 5956
Cpgi5957 13 94709802 to 94711015 1213 CpG island CpG island 5957
Tssr120696 13 94731888 to 94731931 43 + TSS region transcription start site region 120696
Gm48316 13 94752270 to 94752593 323 + pseudogene predicted gene, 48316
Gm46389 13 94754202 to 94754593 391 - pseudogene predicted gene, 46389
Cpgi5958 13 94788727 to 94789598 871 CpG island CpG island 5958
Tssr120697 13 94788873 to 94788951 78 + TSS region transcription start site region 120697
Tbca 13 94788943 to 94842899 53956 + protein coding gene tubulin cofactor A
Tssr123494 13 94789267 to 94789269 2 - TSS region transcription start site region 123494
Tssr120698 13 94817694 to 94817711 17 + TSS region transcription start site region 120698
Tssr120699 13 94826998 to 94827006 8 + TSS region transcription start site region 120699
D13Mit169 13 94866182 to 94866327 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 169
Cpgi5959 13 94868419 to 94869714 1295 CpG island CpG island 5959
Cpgi5960 13 94872632 to 94872805 173 CpG island CpG island 5960
Cpgi5961 13 94873118 to 94874024 906 CpG island CpG island 5961
D13Mit258 13 94874002 to 94874115 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 258
Cpgi5962 13 94875107 to 94875524 417 CpG island CpG island 5962
Tssr120700 13 94875600 to 94875611 11 + TSS region transcription start site region 120700
Tssr120701 13 94875625 to 94875643 18 + TSS region transcription start site region 120701
Otp 13 94875627 to 94885125 9498 + protein coding gene orthopedia homeobox
Tssr120702 13 94875653 to 94875661 8 + TSS region transcription start site region 120702
Tssr120703 13 94876648 to 94876657 9 + TSS region transcription start site region 120703
Cpgi5963 13 94876869 to 94877689 820 CpG island CpG island 5963
Cpgi5964 13 94882634 to 94884510 1876 CpG island CpG island 5964
Cpgi5965 13 94885152 to 94886064 912 CpG island CpG island 5965
V125Dq10 13 94900000 to 94900000 0 QTL vitamin D active form serum level QTL 10
Tssr120704 13 94957391 to 94957393 2 + TSS region transcription start site region 120704