Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:93366716-94176731

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Homer1 13 93303247 to 93405129 101882 + protein coding gene homer scaffolding protein 1
Gm47155 13 93410783 to 93412957 2174 + unclassified gene predicted gene, 47155
Gm18960 13 93420604 to 93421316 712 - pseudogene predicted gene, 18960
Jmy 13 93430101 to 93499808 69707 - protein coding gene junction-mediating and regulatory protein
Tssr123455 13 93431047 to 93431052 5 - TSS region transcription start site region 123455
Gm6109 13 93448488 to 93448835 347 + protein coding gene predicted gene 6109
Tssr120656 13 93461737 to 93461778 41 + TSS region transcription start site region 120656
Gm30155 13 93461846 to 93462184 338 + pseudogene predicted gene, 30155
Cpgi5944 13 93498190 to 93500199 2009 CpG island CpG island 5944
Tssr123456 13 93499444 to 93499466 22 - TSS region transcription start site region 123456
Tssr123457 13 93499667 to 93499674 7 - TSS region transcription start site region 123457
Tssr123458 13 93499683 to 93499702 19 - TSS region transcription start site region 123458
Tssr123459 13 93499716 to 93499801 85 - TSS region transcription start site region 123459
Tssr123460 13 93499803 to 93499825 22 - TSS region transcription start site region 123460
Tssr4140 13 93563305 to 93563313 8 + TSS region transcription start site region 4140
D13Mit29 13 93572026 to 93572175 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 29
Gm18133 13 93585154 to 93585697 543 + pseudogene predicted gene, 18133
Gm31977 13 93595723 to 93598384 2661 - lncRNA gene predicted gene, 31977
Tssr123461 13 93598395 to 93598403 8 - TSS region transcription start site region 123461
Bhmt 13 93616891 to 93637758 20867 - protein coding gene betaine-homocysteine methyltransferase
Tssr123462 13 93623603 to 93623610 7 - TSS region transcription start site region 123462
Gm15622 13 93625382 to 93628633 3251 + antisense lncRNA gene predicted gene 15622
Tssr123463 13 93630797 to 93630802 5 - TSS region transcription start site region 123463
Tssr123464 13 93637564 to 93637576 12 - TSS region transcription start site region 123464
Tssr123465 13 93637585 to 93637621 36 - TSS region transcription start site region 123465
Tssr123466 13 93637631 to 93637649 18 - TSS region transcription start site region 123466
Tssr123467 13 93637717 to 93637733 16 - TSS region transcription start site region 123467
Tssr123468 13 93637750 to 93637761 11 - TSS region transcription start site region 123468
Tssr123469 13 93637797 to 93637809 12 - TSS region transcription start site region 123469
Bhmt2 13 93656097 to 93674302 18205 - protein coding gene betaine-homocysteine methyltransferase 2
Cpgi5945 13 93674112 to 93674729 617 CpG island CpG island 5945
Tssr123470 13 93674276 to 93674297 21 - TSS region transcription start site region 123470
Tssr123471 13 93674300 to 93674309 9 - TSS region transcription start site region 123471
Tssr123472 13 93674323 to 93674326 3 - TSS region transcription start site region 123472
Tssr120657 13 93674403 to 93674452 49 + TSS region transcription start site region 120657
Dmgdh 13 93674436 to 93752823 78387 + protein coding gene dimethylglycine dehydrogenase precursor
AW495222 13 93706182 to 93719175 12993 - antisense lncRNA gene expressed sequence AW495222
Tssr4141 13 93711716 to 93711722 6 + TSS region transcription start site region 4141
Gm15620 13 93727363 to 93727702 339 - pseudogene predicted gene 15620
Cpgi5946 13 93728155 to 93728394 239 CpG island CpG island 5946
Gm41021 13 93754998 to 93758525 3527 + lncRNA gene predicted gene, 41021
Gm47210 13 93770950 to 93772194 1244 - bidirectional promoter lncRNA gene predicted gene, 47210
Cpgi5947 13 93771269 to 93772403 1134 CpG island CpG island 5947
Tssr120658 13 93771656 to 93771702 46 + TSS region transcription start site region 120658
Arsb 13 93771679 to 93943016 171337 + protein coding gene arylsulfatase B
Tssr120659 13 93771716 to 93771731 15 + TSS region transcription start site region 120659
Mir5624 13 93790777 to 93790837 60 + miRNA gene microRNA 5624
Tssr120660 13 93808462 to 93808471 9 + TSS region transcription start site region 120660
Tssr120661 13 93841479 to 93841484 5 + TSS region transcription start site region 120661
Cpgi5948 13 93855982 to 93856153 171 CpG island CpG island 5948
Gm25534 13 93923187 to 93923311 124 - miRNA gene predicted gene, 25534
Gm26527 13 93940990 to 93943015 2025 - lincRNA gene predicted gene, 26527
Gm24737 13 93956310 to 93956409 99 + snRNA gene predicted gene, 24737
Gm47216 13 93983195 to 93991768 8573 - lincRNA gene predicted gene, 47216
Cycs-ps3 13 94053843 to 94054388 545 + pseudogene cytochrome c, pseudogene 3
D13Mit28 13 94054637 to 94054799 162 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 28
Cpgi5949 13 94057220 to 94058307 1087 CpG island CpG island 5949
Tssr120662 13 94057663 to 94057686 23 + TSS region transcription start site region 120662
Tssr120663 13 94057757 to 94057838 81 + TSS region transcription start site region 120663
Lhfpl2 13 94057796 to 94195409 137613 + protein coding gene lipoma HMGIC fusion partner-like 2
Tssr120664 13 94068551 to 94068556 5 + TSS region transcription start site region 120664
Tssr120665 13 94083426 to 94083431 5 + TSS region transcription start site region 120665
Tssr120666 13 94083490 to 94083500 10 + TSS region transcription start site region 120666
Tssr120667 13 94130753 to 94130766 13 + TSS region transcription start site region 120667
Tssr120668 13 94130771 to 94130780 9 + TSS region transcription start site region 120668
Gm15907 13 94137447 to 94140117 2670 - lincRNA gene predicted gene 15907
Tssr123473 13 94154587 to 94154636 49 - TSS region transcription start site region 123473
Tssr123474 13 94155695 to 94155701 6 - TSS region transcription start site region 123474
Tssr120669 13 94167191 to 94167192 1 + TSS region transcription start site region 120669
Tssr120670 13 94169624 to 94169646 22 + TSS region transcription start site region 120670
Cpgi5950 13 94173703 to 94174702 999 CpG island CpG island 5950
Tssr120671 13 94173995 to 94174027 32 + TSS region transcription start site region 120671
Tssr120672 13 94174042 to 94174061 19 + TSS region transcription start site region 120672