Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:93199998-94313525

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm2076 13 93293781 to 93294751 970 + pseudogene predicted gene 2076
Tssr120647 13 93299629 to 93299646 17 + TSS region transcription start site region 120647
Tssr120648 13 93301217 to 93301248 31 + TSS region transcription start site region 120648
A230091C14Rik 13 93301513 to 93303367 1854 unclassified gene RIKEN cDNA A230091C14 gene
Homer1 13 93303247 to 93405129 101882 + protein coding gene homer scaffolding protein 1
Cpgi5943 13 93303313 to 93304996 1683 CpG island CpG island 5943
Tssr120649 13 93303774 to 93303788 14 + TSS region transcription start site region 120649
Tssr120650 13 93304066 to 93304138 72 + TSS region transcription start site region 120650
Tssr120651 13 93304922 to 93304935 13 + TSS region transcription start site region 120651
Tssr120652 13 93304940 to 93304955 15 + TSS region transcription start site region 120652
Tssr120653 13 93308006 to 93308029 23 + TSS region transcription start site region 120653
Gm47075 13 93312041 to 93314055 2014 + unclassified gene predicted gene, 47075
Gm47088 13 93317427 to 93319065 1638 + unclassified gene predicted gene, 47088
Tssr120654 13 93340241 to 93340250 9 + TSS region transcription start site region 120654
Tssr120655 13 93340282 to 93340293 11 + TSS region transcription start site region 120655
Gm47155 13 93410783 to 93412957 2174 + unclassified gene predicted gene, 47155
Gm18960 13 93420604 to 93421316 712 - pseudogene predicted gene, 18960
Jmy 13 93430101 to 93499808 69707 - protein coding gene junction-mediating and regulatory protein
Tssr123455 13 93431047 to 93431052 5 - TSS region transcription start site region 123455
Gm6109 13 93448488 to 93448835 347 + protein coding gene predicted gene 6109
Tssr120656 13 93461737 to 93461778 41 + TSS region transcription start site region 120656
Gm30155 13 93461846 to 93462184 338 + pseudogene predicted gene, 30155
Cpgi5944 13 93498190 to 93500199 2009 CpG island CpG island 5944
Tssr123456 13 93499444 to 93499466 22 - TSS region transcription start site region 123456
Tssr123457 13 93499667 to 93499674 7 - TSS region transcription start site region 123457
Tssr123458 13 93499683 to 93499702 19 - TSS region transcription start site region 123458
Tssr123459 13 93499716 to 93499801 85 - TSS region transcription start site region 123459
Tssr123460 13 93499803 to 93499825 22 - TSS region transcription start site region 123460
Tssr4140 13 93563305 to 93563313 8 + TSS region transcription start site region 4140
D13Mit29 13 93572026 to 93572175 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 29
Gm18133 13 93585154 to 93585697 543 + pseudogene predicted gene, 18133
Gm31977 13 93595723 to 93598384 2661 - lncRNA gene predicted gene, 31977
Tssr123461 13 93598395 to 93598403 8 - TSS region transcription start site region 123461
Bhmt 13 93616891 to 93637758 20867 - protein coding gene betaine-homocysteine methyltransferase
Tssr123462 13 93623603 to 93623610 7 - TSS region transcription start site region 123462
Gm15622 13 93625382 to 93628633 3251 + antisense lncRNA gene predicted gene 15622
Tssr123463 13 93630797 to 93630802 5 - TSS region transcription start site region 123463
Tssr123464 13 93637564 to 93637576 12 - TSS region transcription start site region 123464
Tssr123465 13 93637585 to 93637621 36 - TSS region transcription start site region 123465
Tssr123466 13 93637631 to 93637649 18 - TSS region transcription start site region 123466
Tssr123467 13 93637717 to 93637733 16 - TSS region transcription start site region 123467
Tssr123468 13 93637750 to 93637761 11 - TSS region transcription start site region 123468
Tssr123469 13 93637797 to 93637809 12 - TSS region transcription start site region 123469
Bhmt2 13 93656097 to 93674302 18205 - protein coding gene betaine-homocysteine methyltransferase 2
Cpgi5945 13 93674112 to 93674729 617 CpG island CpG island 5945
Tssr123470 13 93674276 to 93674297 21 - TSS region transcription start site region 123470
Tssr123471 13 93674300 to 93674309 9 - TSS region transcription start site region 123471
Tssr123472 13 93674323 to 93674326 3 - TSS region transcription start site region 123472
Tssr120657 13 93674403 to 93674452 49 + TSS region transcription start site region 120657
Dmgdh 13 93674436 to 93752823 78387 + protein coding gene dimethylglycine dehydrogenase precursor
AW495222 13 93706182 to 93719175 12993 - antisense lncRNA gene expressed sequence AW495222
Tssr4141 13 93711716 to 93711722 6 + TSS region transcription start site region 4141
Gm15620 13 93727363 to 93727702 339 - pseudogene predicted gene 15620
Cpgi5946 13 93728155 to 93728394 239 CpG island CpG island 5946
Gm41021 13 93754998 to 93758525 3527 + lncRNA gene predicted gene, 41021
Gm47210 13 93770950 to 93772194 1244 - bidirectional promoter lncRNA gene predicted gene, 47210
Cpgi5947 13 93771269 to 93772403 1134 CpG island CpG island 5947
Tssr120658 13 93771656 to 93771702 46 + TSS region transcription start site region 120658
Arsb 13 93771679 to 93943016 171337 + protein coding gene arylsulfatase B
Tssr120659 13 93771716 to 93771731 15 + TSS region transcription start site region 120659
Mir5624 13 93790777 to 93790837 60 + miRNA gene microRNA 5624
Tssr120660 13 93808462 to 93808471 9 + TSS region transcription start site region 120660
Tssr120661 13 93841479 to 93841484 5 + TSS region transcription start site region 120661
Cpgi5948 13 93855982 to 93856153 171 CpG island CpG island 5948
Gm25534 13 93923187 to 93923311 124 - miRNA gene predicted gene, 25534
Gm26527 13 93940990 to 93943015 2025 - lincRNA gene predicted gene, 26527
Gm24737 13 93956310 to 93956409 99 + snRNA gene predicted gene, 24737
Gm47216 13 93983195 to 93991768 8573 - lincRNA gene predicted gene, 47216
Cycs-ps3 13 94053843 to 94054388 545 + pseudogene cytochrome c, pseudogene 3
D13Mit28 13 94054637 to 94054799 162 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 28
Cpgi5949 13 94057220 to 94058307 1087 CpG island CpG island 5949
Tssr120662 13 94057663 to 94057686 23 + TSS region transcription start site region 120662
Tssr120663 13 94057757 to 94057838 81 + TSS region transcription start site region 120663
Lhfpl2 13 94057796 to 94195409 137613 + protein coding gene lipoma HMGIC fusion partner-like 2
Tssr120664 13 94068551 to 94068556 5 + TSS region transcription start site region 120664
Tssr120665 13 94083426 to 94083431 5 + TSS region transcription start site region 120665
Tssr120666 13 94083490 to 94083500 10 + TSS region transcription start site region 120666
Tssr120667 13 94130753 to 94130766 13 + TSS region transcription start site region 120667
Tssr120668 13 94130771 to 94130780 9 + TSS region transcription start site region 120668
Gm15907 13 94137447 to 94140117 2670 - lincRNA gene predicted gene 15907
Tssr123473 13 94154587 to 94154636 49 - TSS region transcription start site region 123473
Tssr123474 13 94155695 to 94155701 6 - TSS region transcription start site region 123474
Tssr120669 13 94167191 to 94167192 1 + TSS region transcription start site region 120669
Tssr120670 13 94169624 to 94169646 22 + TSS region transcription start site region 120670
Cpgi5950 13 94173703 to 94174702 999 CpG island CpG island 5950
Tssr120671 13 94173995 to 94174027 32 + TSS region transcription start site region 120671
Tssr120672 13 94174042 to 94174061 19 + TSS region transcription start site region 120672
Tssr120673 13 94176760 to 94176762 2 + TSS region transcription start site region 120673
Tssr120674 13 94192071 to 94192083 12 + TSS region transcription start site region 120674
Tssr120675 13 94194313 to 94194320 7 + TSS region transcription start site region 120675
Scamp1 13 94201433 to 94285826 84393 - protein coding gene secretory carrier membrane protein 1
Tssr123475 13 94203583 to 94203611 28 - TSS region transcription start site region 123475
Tssr120676 13 94223604 to 94223615 11 + TSS region transcription start site region 120676
Tssr120677 13 94224878 to 94224893 15 + TSS region transcription start site region 120677
1700042D18Rik 13 94224889 to 94226024 1135 unclassified gene RIKEN cDNA 1700042D18 gene
Tssr120678 13 94224914 to 94224928 14 + TSS region transcription start site region 120678
Tssr123476 13 94245573 to 94245585 12 - TSS region transcription start site region 123476
Tssr123477 13 94246532 to 94246573 41 - TSS region transcription start site region 123477
Tssr123478 13 94246581 to 94246596 15 - TSS region transcription start site region 123478
Tssr123479 13 94253040 to 94253070 30 - TSS region transcription start site region 123479
Tssr123480 13 94258686 to 94258706 20 - TSS region transcription start site region 123480
Tssr123481 13 94279047 to 94279051 4 - TSS region transcription start site region 123481
Cpgi5951 13 94284404 to 94285950 1546 CpG island CpG island 5951
Tssr123482 13 94285281 to 94285342 61 - TSS region transcription start site region 123482
Tssr123483 13 94285352 to 94285441 89 - TSS region transcription start site region 123483
Tssr120679 13 94285477 to 94285492 15 + TSS region transcription start site region 120679
Tssr123484 13 94285893 to 94285901 8 - TSS region transcription start site region 123484
Tssr123485 13 94285993 to 94286020 27 - TSS region transcription start site region 123485
Gm32089 13 94289448 to 94295006 5558 - lincRNA gene predicted gene, 32089
Gm48102 13 94294017 to 94301250 7233 + lincRNA gene predicted gene, 48102
Tssr120680 13 94294042 to 94294052 10 + TSS region transcription start site region 120680
Tssr123486 13 94294967 to 94294985 18 - TSS region transcription start site region 123486
Tssr123487 13 94294993 to 94295010 17 - TSS region transcription start site region 123487
Tssr123488 13 94295019 to 94295036 17 - TSS region transcription start site region 123488
Tssr123489 13 94295048 to 94295059 11 - TSS region transcription start site region 123489
Tssr123490 13 94295061 to 94295072 11 - TSS region transcription start site region 123490
Tssr120681 13 94295261 to 94295272 11 + TSS region transcription start site region 120681
Gm5668 13 94299424 to 94299859 435 - pseudogene predicted gene 5668
Tssr120682 13 94301454 to 94301483 29 + TSS region transcription start site region 120682
Gm38653 13 94303169 to 94306838 3669 - lncRNA gene predicted gene, 38653
Gm41022 13 94306850 to 94310297 3447 + lncRNA gene predicted gene, 41022