Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:93089667-93909674

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cmya5 13 93040713 to 93144724 104011 - protein coding gene cardiomyopathy associated 5
Tssr123445 13 93092481 to 93092484 3 - TSS region transcription start site region 123445
Tssr123446 13 93093755 to 93093777 22 - TSS region transcription start site region 123446
A630019I02Rik 13 93094833 to 93098968 4135 + antisense lncRNA gene RIKEN cDNA A630019I02 gene
Tssr120645 13 93095641 to 93095663 22 + TSS region transcription start site region 120645
Tssr120646 13 93102976 to 93102988 12 + TSS region transcription start site region 120646
Cpgi5941 13 93144159 to 93144833 674 CpG island CpG island 5941
Tssr123447 13 93144557 to 93144577 20 - TSS region transcription start site region 123447
Tent2 13 93146282 to 93192309 46027 - protein coding gene terminal nucleotidyltransferase 2
D130076G13Rik 13 93155514 to 93158664 3150 unclassified gene RIKEN cDNA D130076G13 gene
Tssr123448 13 93188845 to 93188850 5 - TSS region transcription start site region 123448
Cpgi5942 13 93191834 to 93192732 898 CpG island CpG island 5942
Tssr123449 13 93192193 to 93192200 7 - TSS region transcription start site region 123449
Tssr123450 13 93192217 to 93192237 20 - TSS region transcription start site region 123450
Tssr123451 13 93192239 to 93192263 24 - TSS region transcription start site region 123451
Tssr123452 13 93192270 to 93192328 58 - TSS region transcription start site region 123452
Tssr123453 13 93192375 to 93192424 49 - TSS region transcription start site region 123453
Tssr123454 13 93192425 to 93192432 7 - TSS region transcription start site region 123454
Gm41020 13 93197339 to 93198690 1351 - lncRNA gene predicted gene, 41020
Gm2076 13 93293781 to 93294751 970 + pseudogene predicted gene 2076
Tssr120647 13 93299629 to 93299646 17 + TSS region transcription start site region 120647
Tssr120648 13 93301217 to 93301248 31 + TSS region transcription start site region 120648
A230091C14Rik 13 93301513 to 93303367 1854 unclassified gene RIKEN cDNA A230091C14 gene
Homer1 13 93303247 to 93405129 101882 + protein coding gene homer scaffolding protein 1
Cpgi5943 13 93303313 to 93304996 1683 CpG island CpG island 5943
Tssr120649 13 93303774 to 93303788 14 + TSS region transcription start site region 120649
Tssr120650 13 93304066 to 93304138 72 + TSS region transcription start site region 120650
Tssr120651 13 93304922 to 93304935 13 + TSS region transcription start site region 120651
Tssr120652 13 93304940 to 93304955 15 + TSS region transcription start site region 120652
Tssr120653 13 93308006 to 93308029 23 + TSS region transcription start site region 120653
Gm47075 13 93312041 to 93314055 2014 + unclassified gene predicted gene, 47075
Gm47088 13 93317427 to 93319065 1638 + unclassified gene predicted gene, 47088
Tssr120654 13 93340241 to 93340250 9 + TSS region transcription start site region 120654
Tssr120655 13 93340282 to 93340293 11 + TSS region transcription start site region 120655
Gm47155 13 93410783 to 93412957 2174 + unclassified gene predicted gene, 47155
Gm18960 13 93420604 to 93421316 712 - pseudogene predicted gene, 18960
Jmy 13 93430101 to 93499808 69707 - protein coding gene junction-mediating and regulatory protein
Tssr123455 13 93431047 to 93431052 5 - TSS region transcription start site region 123455
Gm6109 13 93448488 to 93448835 347 + protein coding gene predicted gene 6109
Tssr120656 13 93461737 to 93461778 41 + TSS region transcription start site region 120656
Gm30155 13 93461846 to 93462184 338 + pseudogene predicted gene, 30155
Cpgi5944 13 93498190 to 93500199 2009 CpG island CpG island 5944
Tssr123456 13 93499444 to 93499466 22 - TSS region transcription start site region 123456
Tssr123457 13 93499667 to 93499674 7 - TSS region transcription start site region 123457
Tssr123458 13 93499683 to 93499702 19 - TSS region transcription start site region 123458
Tssr123459 13 93499716 to 93499801 85 - TSS region transcription start site region 123459
Tssr123460 13 93499803 to 93499825 22 - TSS region transcription start site region 123460
Tssr4140 13 93563305 to 93563313 8 + TSS region transcription start site region 4140
D13Mit29 13 93572026 to 93572175 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 29
Gm18133 13 93585154 to 93585697 543 + pseudogene predicted gene, 18133
Gm31977 13 93595723 to 93598384 2661 - lncRNA gene predicted gene, 31977
Tssr123461 13 93598395 to 93598403 8 - TSS region transcription start site region 123461
Bhmt 13 93616891 to 93637758 20867 - protein coding gene betaine-homocysteine methyltransferase
Tssr123462 13 93623603 to 93623610 7 - TSS region transcription start site region 123462
Gm15622 13 93625382 to 93628633 3251 + antisense lncRNA gene predicted gene 15622
Tssr123463 13 93630797 to 93630802 5 - TSS region transcription start site region 123463
Tssr123464 13 93637564 to 93637576 12 - TSS region transcription start site region 123464
Tssr123465 13 93637585 to 93637621 36 - TSS region transcription start site region 123465
Tssr123466 13 93637631 to 93637649 18 - TSS region transcription start site region 123466
Tssr123467 13 93637717 to 93637733 16 - TSS region transcription start site region 123467
Tssr123468 13 93637750 to 93637761 11 - TSS region transcription start site region 123468
Tssr123469 13 93637797 to 93637809 12 - TSS region transcription start site region 123469
Bhmt2 13 93656097 to 93674302 18205 - protein coding gene betaine-homocysteine methyltransferase 2
Cpgi5945 13 93674112 to 93674729 617 CpG island CpG island 5945
Tssr123470 13 93674276 to 93674297 21 - TSS region transcription start site region 123470
Tssr123471 13 93674300 to 93674309 9 - TSS region transcription start site region 123471
Tssr123472 13 93674323 to 93674326 3 - TSS region transcription start site region 123472
Tssr120657 13 93674403 to 93674452 49 + TSS region transcription start site region 120657
Dmgdh 13 93674436 to 93752823 78387 + protein coding gene dimethylglycine dehydrogenase precursor
AW495222 13 93706182 to 93719175 12993 - antisense lncRNA gene expressed sequence AW495222
Tssr4141 13 93711716 to 93711722 6 + TSS region transcription start site region 4141
Gm15620 13 93727363 to 93727702 339 - pseudogene predicted gene 15620
Cpgi5946 13 93728155 to 93728394 239 CpG island CpG island 5946
Gm41021 13 93754998 to 93758525 3527 + lncRNA gene predicted gene, 41021
Gm47210 13 93770950 to 93772194 1244 - bidirectional promoter lncRNA gene predicted gene, 47210
Cpgi5947 13 93771269 to 93772403 1134 CpG island CpG island 5947
Tssr120658 13 93771656 to 93771702 46 + TSS region transcription start site region 120658
Arsb 13 93771679 to 93943016 171337 + protein coding gene arylsulfatase B
Tssr120659 13 93771716 to 93771731 15 + TSS region transcription start site region 120659
Mir5624 13 93790777 to 93790837 60 + miRNA gene microRNA 5624
Tssr120660 13 93808462 to 93808471 9 + TSS region transcription start site region 120660
Tssr120661 13 93841479 to 93841484 5 + TSS region transcription start site region 120661
Cpgi5948 13 93855982 to 93856153 171 CpG island CpG island 5948