Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:92831834-93552732

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5940 13 92844652 to 92845182 530 CpG island CpG island 5940
Tssr120642 13 92844750 to 92844790 40 + TSS region transcription start site region 120642
Mtx3 13 92844760 to 92858230 13470 + protein coding gene metaxin 3
Tssr120643 13 92846654 to 92846669 15 + TSS region transcription start site region 120643
Tssr120644 13 92853102 to 92853105 3 + TSS region transcription start site region 120644
Gm31630 13 92898286 to 92907126 8840 + lncRNA gene predicted gene, 31630
Gm10753 13 92925352 to 92927711 2359 protein coding gene predicted gene 10753
Gm41019 13 93005828 to 93023589 17761 + lncRNA gene predicted gene, 41019
Cmya5 13 93040713 to 93144724 104011 - protein coding gene cardiomyopathy associated 5
Gm31745 13 93055189 to 93069524 14335 + lncRNA gene predicted gene, 31745
Gm4814 13 93073304 to 93074755 1451 + antisense lncRNA gene predicted gene 4814
Tssr123445 13 93092481 to 93092484 3 - TSS region transcription start site region 123445
Tssr123446 13 93093755 to 93093777 22 - TSS region transcription start site region 123446
A630019I02Rik 13 93094833 to 93098968 4135 + antisense lncRNA gene RIKEN cDNA A630019I02 gene
Tssr120645 13 93095641 to 93095663 22 + TSS region transcription start site region 120645
Tssr120646 13 93102976 to 93102988 12 + TSS region transcription start site region 120646
Cpgi5941 13 93144159 to 93144833 674 CpG island CpG island 5941
Tssr123447 13 93144557 to 93144577 20 - TSS region transcription start site region 123447
Tent2 13 93146282 to 93192309 46027 - protein coding gene terminal nucleotidyltransferase 2
D130076G13Rik 13 93155514 to 93158664 3150 unclassified gene RIKEN cDNA D130076G13 gene
Tssr123448 13 93188845 to 93188850 5 - TSS region transcription start site region 123448
Cpgi5942 13 93191834 to 93192732 898 CpG island CpG island 5942
Tssr123449 13 93192193 to 93192200 7 - TSS region transcription start site region 123449
Tssr123450 13 93192217 to 93192237 20 - TSS region transcription start site region 123450
Tssr123451 13 93192239 to 93192263 24 - TSS region transcription start site region 123451
Tssr123452 13 93192270 to 93192328 58 - TSS region transcription start site region 123452
Tssr123453 13 93192375 to 93192424 49 - TSS region transcription start site region 123453
Tssr123454 13 93192425 to 93192432 7 - TSS region transcription start site region 123454
Gm41020 13 93197339 to 93198690 1351 - lncRNA gene predicted gene, 41020
Gm2076 13 93293781 to 93294751 970 + pseudogene predicted gene 2076
Tssr120647 13 93299629 to 93299646 17 + TSS region transcription start site region 120647
Tssr120648 13 93301217 to 93301248 31 + TSS region transcription start site region 120648
A230091C14Rik 13 93301513 to 93303367 1854 unclassified gene RIKEN cDNA A230091C14 gene
Homer1 13 93303247 to 93405129 101882 + protein coding gene homer scaffolding protein 1
Cpgi5943 13 93303313 to 93304996 1683 CpG island CpG island 5943
Tssr120649 13 93303774 to 93303788 14 + TSS region transcription start site region 120649
Tssr120650 13 93304066 to 93304138 72 + TSS region transcription start site region 120650
Tssr120651 13 93304922 to 93304935 13 + TSS region transcription start site region 120651
Tssr120652 13 93304940 to 93304955 15 + TSS region transcription start site region 120652
Tssr120653 13 93308006 to 93308029 23 + TSS region transcription start site region 120653
Gm47075 13 93312041 to 93314055 2014 + unclassified gene predicted gene, 47075
Gm47088 13 93317427 to 93319065 1638 + unclassified gene predicted gene, 47088
Tssr120654 13 93340241 to 93340250 9 + TSS region transcription start site region 120654
Tssr120655 13 93340282 to 93340293 11 + TSS region transcription start site region 120655
Gm47155 13 93410783 to 93412957 2174 + unclassified gene predicted gene, 47155
Gm18960 13 93420604 to 93421316 712 - pseudogene predicted gene, 18960
Jmy 13 93430101 to 93499808 69707 - protein coding gene junction-mediating and regulatory protein
Tssr123455 13 93431047 to 93431052 5 - TSS region transcription start site region 123455
Gm6109 13 93448488 to 93448835 347 + protein coding gene predicted gene 6109
Tssr120656 13 93461737 to 93461778 41 + TSS region transcription start site region 120656
Gm30155 13 93461846 to 93462184 338 + pseudogene predicted gene, 30155
Cpgi5944 13 93498190 to 93500199 2009 CpG island CpG island 5944
Tssr123456 13 93499444 to 93499466 22 - TSS region transcription start site region 123456
Tssr123457 13 93499667 to 93499674 7 - TSS region transcription start site region 123457
Tssr123458 13 93499683 to 93499702 19 - TSS region transcription start site region 123458
Tssr123459 13 93499716 to 93499801 85 - TSS region transcription start site region 123459
Tssr123460 13 93499803 to 93499825 22 - TSS region transcription start site region 123460