Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:92279940-94329955

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211 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msh3 13 92211878 to 92355003 143125 - protein coding gene mutS homolog 3
Gm20379 13 92305980 to 92307183 1203 + protein coding gene predicted gene, 20379
Cpgi5933 13 92354373 to 92355667 1294 CpG island CpG island 5933
Tssr123429 13 92354503 to 92354520 17 - TSS region transcription start site region 123429
Tssr120622 13 92354748 to 92354766 18 + TSS region transcription start site region 120622
Dhfr 13 92354783 to 92389053 34270 + protein coding gene dihydrofolate reductase
Tssr123430 13 92354943 to 92355025 82 - TSS region transcription start site region 123430
Tssr120623 13 92355139 to 92355176 37 + TSS region transcription start site region 120623
Tssr120624 13 92355186 to 92355210 24 + TSS region transcription start site region 120624
Tssr120625 13 92355212 to 92355217 5 + TSS region transcription start site region 120625
Tssr120626 13 92355239 to 92355248 9 + TSS region transcription start site region 120626
Gm19308 13 92355706 to 92357918 2212 - pseudogene predicted gene, 19308
C030017D09Rik 13 92415017 to 92427224 12207 - antisense lncRNA gene RIKEN cDNA C030017D09 gene
Cpgi5934 13 92425648 to 92427256 1608 CpG island CpG island 5934
Ankrd34b 13 92425896 to 92441658 15762 + protein coding gene ankyrin repeat domain 34B
Tssr120627 13 92425920 to 92425929 9 + TSS region transcription start site region 120627
Tssr120628 13 92425957 to 92426031 74 + TSS region transcription start site region 120628
D13Mit286 13 92445760 to 92445877 117 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 286
Fam151b 13 92449625 to 92484015 34390 - protein coding gene family with sequence similarity 151, member B
Tssr123431 13 92451256 to 92451276 20 - TSS region transcription start site region 123431
Cpgi5935 13 92483910 to 92484071 161 CpG island CpG island 5935
Tssr123432 13 92483951 to 92483986 35 - TSS region transcription start site region 123432
Tssr123433 13 92483996 to 92484037 41 - TSS region transcription start site region 123433
Zfyve16 13 92487108 to 92530868 43760 - protein coding gene zinc finger, FYVE domain containing 16
Tssr123434 13 92523264 to 92523276 12 - TSS region transcription start site region 123434
Tssr123435 13 92529983 to 92529987 4 - TSS region transcription start site region 123435
Cpgi5936 13 92530164 to 92531391 1227 CpG island CpG island 5936
Tssr123436 13 92530788 to 92530802 14 - TSS region transcription start site region 123436
Tssr123437 13 92530813 to 92530858 45 - TSS region transcription start site region 123437
Tssr120629 13 92530907 to 92530923 16 + TSS region transcription start site region 120629
Tssr120630 13 92530933 to 92530961 28 + TSS region transcription start site region 120630
Tssr120631 13 92568925 to 92568928 3 + TSS region transcription start site region 120631
Spz1 13 92574636 to 92576172 1536 - protein coding gene spermatogenic leucine zipper 1
Cpgi5937 13 92574927 to 92575184 257 CpG island CpG island 5937
Tssr120632 13 92575777 to 92575789 12 + TSS region transcription start site region 120632
Tssr123438 13 92576165 to 92576200 35 - TSS region transcription start site region 123438
Tssr4139 13 92576224 to 92576231 7 - TSS region transcription start site region 4139
Cpgi5938 13 92610583 to 92611808 1225 CpG island CpG island 5938
Tssr123439 13 92610924 to 92610950 26 - TSS region transcription start site region 123439
Tssr120633 13 92611078 to 92611117 39 + TSS region transcription start site region 120633
Tssr120634 13 92611119 to 92611139 20 + TSS region transcription start site region 120634
Serinc5 13 92611138 to 92711947 100809 + protein coding gene serine incorporator 5
Tssr120635 13 92611168 to 92611179 11 + TSS region transcription start site region 120635
Tssr120636 13 92642227 to 92642236 9 + TSS region transcription start site region 120636
Tssr120637 13 92661014 to 92661060 46 + TSS region transcription start site region 120637
Tssr120638 13 92683368 to 92683400 32 + TSS region transcription start site region 120638
Tssr120639 13 92693257 to 92693259 2 + TSS region transcription start site region 120639
Gm41018 13 92704730 to 92707718 2988 - lncRNA gene predicted gene, 41018
Tssr123440 13 92706525 to 92706548 23 - TSS region transcription start site region 123440
Gm5199 13 92719362 to 92719827 465 + pseudogene predicted gene 5199
D13Mit106 13 92737839 to 92737972 133 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 106
Thbs4 13 92751590 to 92794818 43228 - protein coding gene thrombospondin 4
Tssr123441 13 92755142 to 92755176 34 - TSS region transcription start site region 123441
Tssr120640 13 92775020 to 92775029 9 + TSS region transcription start site region 120640
Cpgi5939 13 92794401 to 92795125 724 CpG island CpG island 5939
Tssr123442 13 92794809 to 92794825 16 - TSS region transcription start site region 123442
Tssr123443 13 92794982 to 92795000 18 - TSS region transcription start site region 123443
Tssr123444 13 92795003 to 92795029 26 - TSS region transcription start site region 123444
Tssr120641 13 92811804 to 92811805 1 + TSS region transcription start site region 120641
D13Mit105 13 92824878 to 92825027 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 105
Cpgi5940 13 92844652 to 92845182 530 CpG island CpG island 5940
Tssr120642 13 92844750 to 92844790 40 + TSS region transcription start site region 120642
Mtx3 13 92844760 to 92858230 13470 + protein coding gene metaxin 3
Tssr120643 13 92846654 to 92846669 15 + TSS region transcription start site region 120643
Tssr120644 13 92853102 to 92853105 3 + TSS region transcription start site region 120644
Gm31630 13 92898286 to 92907126 8840 + lncRNA gene predicted gene, 31630
Gm10753 13 92925352 to 92927711 2359 protein coding gene predicted gene 10753
Gm41019 13 93005828 to 93023589 17761 + lncRNA gene predicted gene, 41019
Cmya5 13 93040713 to 93144724 104011 - protein coding gene cardiomyopathy associated 5
Gm31745 13 93055189 to 93069524 14335 + lncRNA gene predicted gene, 31745
Gm4814 13 93073304 to 93074755 1451 + antisense lncRNA gene predicted gene 4814
Tssr123445 13 93092481 to 93092484 3 - TSS region transcription start site region 123445
Tssr123446 13 93093755 to 93093777 22 - TSS region transcription start site region 123446
A630019I02Rik 13 93094833 to 93098968 4135 + antisense lncRNA gene RIKEN cDNA A630019I02 gene
Tssr120645 13 93095641 to 93095663 22 + TSS region transcription start site region 120645
Tssr120646 13 93102976 to 93102988 12 + TSS region transcription start site region 120646
Cpgi5941 13 93144159 to 93144833 674 CpG island CpG island 5941
Tssr123447 13 93144557 to 93144577 20 - TSS region transcription start site region 123447
Tent2 13 93146282 to 93192309 46027 - protein coding gene terminal nucleotidyltransferase 2
D130076G13Rik 13 93155514 to 93158664 3150 unclassified gene RIKEN cDNA D130076G13 gene
Tssr123448 13 93188845 to 93188850 5 - TSS region transcription start site region 123448
Cpgi5942 13 93191834 to 93192732 898 CpG island CpG island 5942
Tssr123449 13 93192193 to 93192200 7 - TSS region transcription start site region 123449
Tssr123450 13 93192217 to 93192237 20 - TSS region transcription start site region 123450
Tssr123451 13 93192239 to 93192263 24 - TSS region transcription start site region 123451
Tssr123452 13 93192270 to 93192328 58 - TSS region transcription start site region 123452
Tssr123453 13 93192375 to 93192424 49 - TSS region transcription start site region 123453
Tssr123454 13 93192425 to 93192432 7 - TSS region transcription start site region 123454
Gm41020 13 93197339 to 93198690 1351 - lncRNA gene predicted gene, 41020
Gm2076 13 93293781 to 93294751 970 + pseudogene predicted gene 2076
Tssr120647 13 93299629 to 93299646 17 + TSS region transcription start site region 120647
Tssr120648 13 93301217 to 93301248 31 + TSS region transcription start site region 120648
A230091C14Rik 13 93301513 to 93303367 1854 unclassified gene RIKEN cDNA A230091C14 gene
Homer1 13 93303247 to 93405129 101882 + protein coding gene homer scaffolding protein 1
Cpgi5943 13 93303313 to 93304996 1683 CpG island CpG island 5943
Tssr120649 13 93303774 to 93303788 14 + TSS region transcription start site region 120649
Tssr120650 13 93304066 to 93304138 72 + TSS region transcription start site region 120650
Tssr120651 13 93304922 to 93304935 13 + TSS region transcription start site region 120651
Tssr120652 13 93304940 to 93304955 15 + TSS region transcription start site region 120652
Tssr120653 13 93308006 to 93308029 23 + TSS region transcription start site region 120653
Gm47075 13 93312041 to 93314055 2014 + unclassified gene predicted gene, 47075
Gm47088 13 93317427 to 93319065 1638 + unclassified gene predicted gene, 47088
Tssr120654 13 93340241 to 93340250 9 + TSS region transcription start site region 120654
Tssr120655 13 93340282 to 93340293 11 + TSS region transcription start site region 120655
Gm47155 13 93410783 to 93412957 2174 + unclassified gene predicted gene, 47155
Gm18960 13 93420604 to 93421316 712 - pseudogene predicted gene, 18960
Jmy 13 93430101 to 93499808 69707 - protein coding gene junction-mediating and regulatory protein
Tssr123455 13 93431047 to 93431052 5 - TSS region transcription start site region 123455
Gm6109 13 93448488 to 93448835 347 + protein coding gene predicted gene 6109
Tssr120656 13 93461737 to 93461778 41 + TSS region transcription start site region 120656
Gm30155 13 93461846 to 93462184 338 + pseudogene predicted gene, 30155
Cpgi5944 13 93498190 to 93500199 2009 CpG island CpG island 5944
Tssr123456 13 93499444 to 93499466 22 - TSS region transcription start site region 123456
Tssr123457 13 93499667 to 93499674 7 - TSS region transcription start site region 123457
Tssr123458 13 93499683 to 93499702 19 - TSS region transcription start site region 123458
Tssr123459 13 93499716 to 93499801 85 - TSS region transcription start site region 123459
Tssr123460 13 93499803 to 93499825 22 - TSS region transcription start site region 123460
Tssr4140 13 93563305 to 93563313 8 + TSS region transcription start site region 4140
D13Mit29 13 93572026 to 93572175 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 29
Gm18133 13 93585154 to 93585697 543 + pseudogene predicted gene, 18133
Gm31977 13 93595723 to 93598384 2661 - lncRNA gene predicted gene, 31977
Tssr123461 13 93598395 to 93598403 8 - TSS region transcription start site region 123461
Bhmt 13 93616891 to 93637758 20867 - protein coding gene betaine-homocysteine methyltransferase
Tssr123462 13 93623603 to 93623610 7 - TSS region transcription start site region 123462
Gm15622 13 93625382 to 93628633 3251 + antisense lncRNA gene predicted gene 15622
Tssr123463 13 93630797 to 93630802 5 - TSS region transcription start site region 123463
Tssr123464 13 93637564 to 93637576 12 - TSS region transcription start site region 123464
Tssr123465 13 93637585 to 93637621 36 - TSS region transcription start site region 123465
Tssr123466 13 93637631 to 93637649 18 - TSS region transcription start site region 123466
Tssr123467 13 93637717 to 93637733 16 - TSS region transcription start site region 123467
Tssr123468 13 93637750 to 93637761 11 - TSS region transcription start site region 123468
Tssr123469 13 93637797 to 93637809 12 - TSS region transcription start site region 123469
Bhmt2 13 93656097 to 93674302 18205 - protein coding gene betaine-homocysteine methyltransferase 2
Cpgi5945 13 93674112 to 93674729 617 CpG island CpG island 5945
Tssr123470 13 93674276 to 93674297 21 - TSS region transcription start site region 123470
Tssr123471 13 93674300 to 93674309 9 - TSS region transcription start site region 123471
Tssr123472 13 93674323 to 93674326 3 - TSS region transcription start site region 123472
Tssr120657 13 93674403 to 93674452 49 + TSS region transcription start site region 120657
Dmgdh 13 93674436 to 93752823 78387 + protein coding gene dimethylglycine dehydrogenase precursor
AW495222 13 93706182 to 93719175 12993 - antisense lncRNA gene expressed sequence AW495222
Tssr4141 13 93711716 to 93711722 6 + TSS region transcription start site region 4141
Gm15620 13 93727363 to 93727702 339 - pseudogene predicted gene 15620
Cpgi5946 13 93728155 to 93728394 239 CpG island CpG island 5946
Gm41021 13 93754998 to 93758525 3527 + lncRNA gene predicted gene, 41021
Gm47210 13 93770950 to 93772194 1244 - bidirectional promoter lncRNA gene predicted gene, 47210
Cpgi5947 13 93771269 to 93772403 1134 CpG island CpG island 5947
Tssr120658 13 93771656 to 93771702 46 + TSS region transcription start site region 120658
Arsb 13 93771679 to 93943016 171337 + protein coding gene arylsulfatase B
Tssr120659 13 93771716 to 93771731 15 + TSS region transcription start site region 120659
Mir5624 13 93790777 to 93790837 60 + miRNA gene microRNA 5624
Tssr120660 13 93808462 to 93808471 9 + TSS region transcription start site region 120660
Tssr120661 13 93841479 to 93841484 5 + TSS region transcription start site region 120661
Cpgi5948 13 93855982 to 93856153 171 CpG island CpG island 5948
Gm25534 13 93923187 to 93923311 124 - miRNA gene predicted gene, 25534
Gm26527 13 93940990 to 93943015 2025 - lincRNA gene predicted gene, 26527
Gm24737 13 93956310 to 93956409 99 + snRNA gene predicted gene, 24737
Gm47216 13 93983195 to 93991768 8573 - lincRNA gene predicted gene, 47216
Cycs-ps3 13 94053843 to 94054388 545 + pseudogene cytochrome c, pseudogene 3
D13Mit28 13 94054637 to 94054799 162 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 28
Cpgi5949 13 94057220 to 94058307 1087 CpG island CpG island 5949
Tssr120662 13 94057663 to 94057686 23 + TSS region transcription start site region 120662
Tssr120663 13 94057757 to 94057838 81 + TSS region transcription start site region 120663
Lhfpl2 13 94057796 to 94195409 137613 + protein coding gene lipoma HMGIC fusion partner-like 2
Tssr120664 13 94068551 to 94068556 5 + TSS region transcription start site region 120664
Tssr120665 13 94083426 to 94083431 5 + TSS region transcription start site region 120665
Tssr120666 13 94083490 to 94083500 10 + TSS region transcription start site region 120666
Tssr120667 13 94130753 to 94130766 13 + TSS region transcription start site region 120667
Tssr120668 13 94130771 to 94130780 9 + TSS region transcription start site region 120668
Gm15907 13 94137447 to 94140117 2670 - lincRNA gene predicted gene 15907
Tssr123473 13 94154587 to 94154636 49 - TSS region transcription start site region 123473
Tssr123474 13 94155695 to 94155701 6 - TSS region transcription start site region 123474
Tssr120669 13 94167191 to 94167192 1 + TSS region transcription start site region 120669
Tssr120670 13 94169624 to 94169646 22 + TSS region transcription start site region 120670
Cpgi5950 13 94173703 to 94174702 999 CpG island CpG island 5950
Tssr120671 13 94173995 to 94174027 32 + TSS region transcription start site region 120671
Tssr120672 13 94174042 to 94174061 19 + TSS region transcription start site region 120672
Tssr120673 13 94176760 to 94176762 2 + TSS region transcription start site region 120673
Tssr120674 13 94192071 to 94192083 12 + TSS region transcription start site region 120674
Tssr120675 13 94194313 to 94194320 7 + TSS region transcription start site region 120675
Scamp1 13 94201433 to 94285826 84393 - protein coding gene secretory carrier membrane protein 1
Tssr123475 13 94203583 to 94203611 28 - TSS region transcription start site region 123475
Tssr120676 13 94223604 to 94223615 11 + TSS region transcription start site region 120676
Tssr120677 13 94224878 to 94224893 15 + TSS region transcription start site region 120677
1700042D18Rik 13 94224889 to 94226024 1135 unclassified gene RIKEN cDNA 1700042D18 gene
Tssr120678 13 94224914 to 94224928 14 + TSS region transcription start site region 120678
Tssr123476 13 94245573 to 94245585 12 - TSS region transcription start site region 123476
Tssr123477 13 94246532 to 94246573 41 - TSS region transcription start site region 123477
Tssr123478 13 94246581 to 94246596 15 - TSS region transcription start site region 123478
Tssr123479 13 94253040 to 94253070 30 - TSS region transcription start site region 123479
Tssr123480 13 94258686 to 94258706 20 - TSS region transcription start site region 123480
Tssr123481 13 94279047 to 94279051 4 - TSS region transcription start site region 123481
Cpgi5951 13 94284404 to 94285950 1546 CpG island CpG island 5951
Tssr123482 13 94285281 to 94285342 61 - TSS region transcription start site region 123482
Tssr123483 13 94285352 to 94285441 89 - TSS region transcription start site region 123483
Tssr120679 13 94285477 to 94285492 15 + TSS region transcription start site region 120679
Tssr123484 13 94285893 to 94285901 8 - TSS region transcription start site region 123484
Tssr123485 13 94285993 to 94286020 27 - TSS region transcription start site region 123485
Gm32089 13 94289448 to 94295006 5558 - lincRNA gene predicted gene, 32089
Gm48102 13 94294017 to 94301250 7233 + lincRNA gene predicted gene, 48102
Tssr120680 13 94294042 to 94294052 10 + TSS region transcription start site region 120680