Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:91360283-91803429

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A830009L08Rik 13 91368990 to 91388085 19095 - lincRNA gene RIKEN cDNA A830009L08 gene
Cpgi5928 13 91370858 to 91371159 301 CpG island CpG island 5928
Tssr123405 13 91370942 to 91370974 32 - TSS region transcription start site region 123405
Gm29540 13 91373842 to 91374294 452 - sense intronic lncRNA gene predicted gene 29540
Tssr4136 13 91374877 to 91374883 6 + TSS region transcription start site region 4136
Tssr123406 13 91388079 to 91388090 11 - TSS region transcription start site region 123406
Tssr123407 13 91388101 to 91388110 9 - TSS region transcription start site region 123407
Cpgi5929 13 91460170 to 91462377 2207 CpG island CpG island 5929
Ssbp2 13 91460283 to 91703429 243146 + protein coding gene single-stranded DNA binding protein 2
Tssr120598 13 91461105 to 91461112 7 + TSS region transcription start site region 120598
Tssr120599 13 91461114 to 91461125 11 + TSS region transcription start site region 120599
Tssr120600 13 91461126 to 91461143 17 + TSS region transcription start site region 120600
Tssr120601 13 91461145 to 91461188 43 + TSS region transcription start site region 120601
Tssr120602 13 91461199 to 91461204 5 + TSS region transcription start site region 120602
D13Mit202 13 91469631 to 91469771 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 202
Tssr120603 13 91484539 to 91484556 17 + TSS region transcription start site region 120603
Tssr120604 13 91484560 to 91484575 15 + TSS region transcription start site region 120604
Tssr120605 13 91496244 to 91496245 1 + TSS region transcription start site region 120605
Tssr120606 13 91504477 to 91504489 12 + TSS region transcription start site region 120606
Gm41016 13 91534058 to 91539333 5275 + lncRNA gene predicted gene, 41016
Tssr120607 13 91564320 to 91564334 14 + TSS region transcription start site region 120607
Tssr120608 13 91581826 to 91581831 5 + TSS region transcription start site region 120608
Tssr123408 13 91591418 to 91591419 1 - TSS region transcription start site region 123408
Tssr120609 13 91606444 to 91606450 6 + TSS region transcription start site region 120609
Tssr120610 13 91609277 to 91609303 26 + TSS region transcription start site region 120610
Tssr120611 13 91624297 to 91624304 7 + TSS region transcription start site region 120611
D13Mit192.1 13 91665778 to 91665926 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 192.1
Tssr120612 13 91676782 to 91676793 11 + TSS region transcription start site region 120612
Tssr120613 13 91678616 to 91678631 15 + TSS region transcription start site region 120613
4833422C13Rik 13 91701665 to 91741872 40207 - antisense lncRNA gene RIKEN cDNA 4833422C13 gene
Gm22778 13 91723256 to 91723383 127 + snoRNA gene predicted gene, 22778
Cpgi5930 13 91741175 to 91741884 709 CpG island CpG island 5930
Tssr120614 13 91741484 to 91741489 5 + TSS region transcription start site region 120614
Tssr120615 13 91741507 to 91741531 24 + TSS region transcription start site region 120615
Acot12 13 91741512 to 91786148 44636 + protein coding gene acyl-CoA thioesterase 12
Tssr123409 13 91741746 to 91741766 20 - TSS region transcription start site region 123409
Tssr123410 13 91741866 to 91741880 14 - TSS region transcription start site region 123410
Gm24597 13 91744705 to 91745004 299 - unclassified non-coding RNA gene predicted gene, 24597
Tssr120616 13 91750202 to 91750235 33 + TSS region transcription start site region 120616
Gm27656 13 91752106 to 91752185 79 + miRNA gene predicted gene, 27656
4933440K10Rik 13 91780896 to 91782354 1458 unclassified gene RIKEN cDNA 4933440K10 gene
D13Mit193.1 13 91780967 to 91781078 111 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 193.1
D13Mit193 13 91781056 to 91781177 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 193
Zcchc9 13 91796533 to 91807705 11172 - protein coding gene zinc finger, CCHC domain containing 9