Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:90984877-91764883

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg10 13 90935356 to 91223968 288612 - protein coding gene autophagy related 10
Tssr120596 13 91098496 to 91098501 5 + TSS region transcription start site region 120596
D13Mit319 13 91181749 to 91181856 107 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-319
D13Gor2 13 91182431 to 91182946 515 DNA segment DNA segment, Chr 13, Gorin 2
Gm17450 13 91220452 to 91220878 426 + pseudogene predicted gene, 17450
Cpgi5927 13 91223735 to 91224387 652 CpG island CpG island 5927
Tssr123403 13 91223955 to 91223994 39 - TSS region transcription start site region 123403
D13Sh1 13 91236286 to 91236665 379 DNA segment DNA segment, Chr 13, Steve Hardies 1
Gm41014 13 91250388 to 91278012 27624 - lncRNA gene predicted gene, 41014
Gm47381 13 91259376 to 91274954 15578 + lincRNA gene predicted gene, 47381
Gm4130 13 91261449 to 91262418 969 - pseudogene predicted gene 4130
Tssr123404 13 91262748 to 91262751 3 - TSS region transcription start site region 123404
Tssr120597 13 91318820 to 91318822 2 + TSS region transcription start site region 120597
A830009L08Rik 13 91368990 to 91388085 19095 - lincRNA gene RIKEN cDNA A830009L08 gene
Cpgi5928 13 91370858 to 91371159 301 CpG island CpG island 5928
Tssr123405 13 91370942 to 91370974 32 - TSS region transcription start site region 123405
Gm29540 13 91373842 to 91374294 452 - sense intronic lncRNA gene predicted gene 29540
Tssr4136 13 91374877 to 91374883 6 + TSS region transcription start site region 4136
Tssr123406 13 91388079 to 91388090 11 - TSS region transcription start site region 123406
Tssr123407 13 91388101 to 91388110 9 - TSS region transcription start site region 123407
Cpgi5929 13 91460170 to 91462377 2207 CpG island CpG island 5929
Ssbp2 13 91460283 to 91703429 243146 + protein coding gene single-stranded DNA binding protein 2
Tssr120598 13 91461105 to 91461112 7 + TSS region transcription start site region 120598
Tssr120599 13 91461114 to 91461125 11 + TSS region transcription start site region 120599
Tssr120600 13 91461126 to 91461143 17 + TSS region transcription start site region 120600
Tssr120601 13 91461145 to 91461188 43 + TSS region transcription start site region 120601
Tssr120602 13 91461199 to 91461204 5 + TSS region transcription start site region 120602
D13Mit202 13 91469631 to 91469771 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 202
Tssr120603 13 91484539 to 91484556 17 + TSS region transcription start site region 120603
Tssr120604 13 91484560 to 91484575 15 + TSS region transcription start site region 120604
Tssr120605 13 91496244 to 91496245 1 + TSS region transcription start site region 120605
Tssr120606 13 91504477 to 91504489 12 + TSS region transcription start site region 120606
Gm41016 13 91534058 to 91539333 5275 + lncRNA gene predicted gene, 41016
Tssr120607 13 91564320 to 91564334 14 + TSS region transcription start site region 120607
Tssr120608 13 91581826 to 91581831 5 + TSS region transcription start site region 120608
Tssr123408 13 91591418 to 91591419 1 - TSS region transcription start site region 123408
Tssr120609 13 91606444 to 91606450 6 + TSS region transcription start site region 120609
Tssr120610 13 91609277 to 91609303 26 + TSS region transcription start site region 120610
Tssr120611 13 91624297 to 91624304 7 + TSS region transcription start site region 120611
D13Mit192.1 13 91665778 to 91665926 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 192.1
Tssr120612 13 91676782 to 91676793 11 + TSS region transcription start site region 120612
Tssr120613 13 91678616 to 91678631 15 + TSS region transcription start site region 120613
4833422C13Rik 13 91701665 to 91741872 40207 - antisense lncRNA gene RIKEN cDNA 4833422C13 gene
Gm22778 13 91723256 to 91723383 127 + snoRNA gene predicted gene, 22778
Cpgi5930 13 91741175 to 91741884 709 CpG island CpG island 5930
Tssr120614 13 91741484 to 91741489 5 + TSS region transcription start site region 120614
Tssr120615 13 91741507 to 91741531 24 + TSS region transcription start site region 120615
Acot12 13 91741512 to 91786148 44636 + protein coding gene acyl-CoA thioesterase 12
Tssr123409 13 91741746 to 91741766 20 - TSS region transcription start site region 123409
Tssr123410 13 91741866 to 91741880 14 - TSS region transcription start site region 123410
Gm24597 13 91744705 to 91745004 299 - unclassified non-coding RNA gene predicted gene, 24597
Tssr120616 13 91750202 to 91750235 33 + TSS region transcription start site region 120616
Gm27656 13 91752106 to 91752185 79 + miRNA gene predicted gene, 27656