Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:9029744-11300774

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36264 13 9001952 to 9076335 74383 - lincRNA gene predicted gene, 36264
Tssr121351 13 9076381 to 9076392 11 - TSS region transcription start site region 121351
Cpgi5263 13 9093364 to 9094842 1478 CpG island CpG island 5263
Tssr118307 13 9093814 to 9093828 14 + TSS region transcription start site region 118307
Larp4b 13 9093881 to 9174451 80570 + protein coding gene La ribonucleoprotein domain family, member 4B
Tssr118308 13 9093885 to 9093892 7 + TSS region transcription start site region 118308
Tssr118309 13 9093893 to 9093927 34 + TSS region transcription start site region 118309
Tssr118310 13 9093959 to 9093970 11 + TSS region transcription start site region 118310
Gm23553 13 9109305 to 9109599 294 + unclassified non-coding RNA gene predicted gene, 23553
Tssr118311 13 9127942 to 9127959 17 + TSS region transcription start site region 118311
Tssr118312 13 9127964 to 9127986 22 + TSS region transcription start site region 118312
A130023E24Rik 13 9128238 to 9130508 2270 unclassified non-coding RNA gene RIKEN cDNA A130023E24 gene
Gm28155 13 9140731 to 9140881 150 - pseudogene predicted gene 28155
Tssr118313 13 9145378 to 9145391 13 + TSS region transcription start site region 118313
Tssr118314 13 9149238 to 9149245 7 + TSS region transcription start site region 118314
Tssr3989 13 9152358 to 9152378 20 - TSS region transcription start site region 3989
Tssr118315 13 9171327 to 9171332 5 + TSS region transcription start site region 118315
Tssr121352 13 9173084 to 9173089 5 - TSS region transcription start site region 121352
Tssr121353 13 9173477 to 9173485 8 - TSS region transcription start site region 121353
Tssr118316 13 9175416 to 9175450 34 + TSS region transcription start site region 118316
Cpgi5264 13 9223440 to 9223757 317 CpG island CpG island 5264
Gm8784 13 9223537 to 9224971 1434 + pseudogene predicted gene 8784
Tssr118317 13 9242719 to 9242726 7 + TSS region transcription start site region 118317
Gm48825 13 9268684 to 9274143 5459 + lincRNA gene predicted gene, 48825
Gm46391 13 9272919 to 9273121 202 - pseudogene predicted gene, 46391
Cpgi5265 13 9276020 to 9277857 1837 CpG island CpG island 5265
Tssr118318 13 9276477 to 9276620 143 + TSS region transcription start site region 118318
Dip2c 13 9276528 to 9668928 392400 + protein coding gene disco interacting protein 2 homolog C
Tssr118319 13 9276639 to 9276661 22 + TSS region transcription start site region 118319
Tssr118320 13 9276669 to 9276714 45 + TSS region transcription start site region 118320
Tssr118321 13 9276716 to 9276727 11 + TSS region transcription start site region 118321
Tssr118322 13 9278174 to 9278178 4 + TSS region transcription start site region 118322
Tssr118323 13 9280649 to 9280653 4 + TSS region transcription start site region 118323
Tssr118324 13 9281601 to 9281603 2 + TSS region transcription start site region 118324
Gm48887 13 9321427 to 9322979 1552 + unclassified gene predicted gene, 48887
Gm48890 13 9328630 to 9330247 1617 + unclassified gene predicted gene, 48890
Gm48870 13 9344402 to 9348425 4023 + unclassified gene predicted gene, 48870
Tssr118325 13 9350076 to 9350080 4 + TSS region transcription start site region 118325
Gm48869 13 9352028 to 9352689 661 + pseudogene predicted gene, 48869
Gm19191 13 9385729 to 9387327 1598 - pseudogene predicted gene, 19191
Gm26601 13 9387139 to 9391741 4602 + lincRNA gene predicted gene, 26601
Cpgi5266 13 9387699 to 9387988 289 CpG island CpG island 5266
Gm48889 13 9412517 to 9415160 2643 + unclassified gene predicted gene, 48889
D13Mit239 13 9417007 to 9417106 99 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 239
Tssr118326 13 9418894 to 9418906 12 + TSS region transcription start site region 118326
Gm48871 13 9445900 to 9448419 2519 + unclassified gene predicted gene, 48871
D13Mit55 13 9467486 to 9467678 192 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 55
Cpgi5267 13 9494834 to 9495032 198 CpG island CpG island 5267
Tssr118327 13 9536813 to 9536824 11 + TSS region transcription start site region 118327
Gm48872 13 9557861 to 9561989 4128 + unclassified gene predicted gene, 48872
Tssr118328 13 9601686 to 9601687 1 + TSS region transcription start site region 118328
Gm23496 13 9623380 to 9623627 247 - unclassified non-coding RNA gene predicted gene, 23496
Gm48888 13 9635329 to 9637089 1760 - unclassified gene predicted gene, 48888
Gm36423 13 9684226 to 9689544 5318 + antisense lncRNA gene predicted gene, 36423
Tssr118329 13 9684239 to 9684250 11 + TSS region transcription start site region 118329
Tssr118330 13 9684255 to 9684278 23 + TSS region transcription start site region 118330
Tssr118331 13 9684284 to 9684308 24 + TSS region transcription start site region 118331
Tssr3990 13 9684315 to 9684322 7 + TSS region transcription start site region 3990
Tssr118332 13 9684557 to 9684562 5 + TSS region transcription start site region 118332
Zmynd11 13 9684833 to 9765330 80497 - protein coding gene zinc finger, MYND domain containing 11
Tssr118333 13 9685115 to 9685120 5 + TSS region transcription start site region 118333
Cpgi5268 13 9690124 to 9690390 266 CpG island CpG island 5268
Cpgi5269 13 9690843 to 9691074 231 CpG island CpG island 5269
Gm47802 13 9733897 to 9738234 4337 + antisense lncRNA gene predicted gene, 47802
Gm47826 13 9753741 to 9756879 3138 - unclassified gene predicted gene, 47826
Tssr121354 13 9754164 to 9754167 3 - TSS region transcription start site region 121354
Cpgi5270 13 9763502 to 9765357 1855 CpG island CpG island 5270
Tssr121355 13 9764371 to 9764421 50 - TSS region transcription start site region 121355
Tssr121356 13 9764431 to 9764475 44 - TSS region transcription start site region 121356
Tssr121357 13 9764584 to 9764595 11 - TSS region transcription start site region 121357
Tssr121358 13 9764865 to 9764941 76 - TSS region transcription start site region 121358
Tssr121359 13 9764943 to 9764994 51 - TSS region transcription start site region 121359
Tssr121360 13 9765137 to 9765184 47 - TSS region transcription start site region 121360
Tssr121361 13 9765240 to 9765257 17 - TSS region transcription start site region 121361
Tssr121362 13 9765361 to 9765370 9 - TSS region transcription start site region 121362
Gm40665 13 9796447 to 9801823 5376 + lncRNA gene predicted gene, 40665
Gm47401 13 9820511 to 9820733 222 + pseudogene predicted gene, 47401
Gm24187 13 9834469 to 9834525 56 - miRNA gene predicted gene, 24187
Tssr118334 13 9883298 to 9883308 10 + TSS region transcription start site region 118334
Gm47406 13 9892910 to 9894050 1140 + pseudogene predicted gene, 47406
D13Mit215 13 10046277 to 10046502 225 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 215
Gm47411 13 10048667 to 10051848 3181 - unclassified gene predicted gene, 47411
Gm47405 13 10064758 to 10070866 6108 - sense intronic lncRNA gene predicted gene, 47405
D13Mit172 13 10081042 to 10081188 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 172
9330159N22Rik 13 10164744 to 10165774 1030 - unclassified gene RIKEN cDNA 9330159N22 gene
Gm47404 13 10175784 to 10180807 5023 - sense intronic lncRNA gene predicted gene, 47404
Gm26861 13 10359165 to 10673847 314682 + antisense lncRNA gene predicted gene, 26861
Cpgi5271 13 10360077 to 10361200 1123 CpG island CpG island 5271
Tssr121363 13 10360810 to 10360853 43 - TSS region transcription start site region 121363
Chrm3 13 10360847 to 9875486 -485361 - protein coding gene cholinergic receptor, muscarinic 3, cardiac
Tssr121364 13 10360915 to 10360941 26 - TSS region transcription start site region 121364
Tssr121365 13 10360942 to 10360970 28 - TSS region transcription start site region 121365
Gm47407 13 10517687 to 10538811 21124 + lincRNA gene predicted gene, 47407
D13Mit216 13 10533271 to 10533390 119 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 216
Gm36525 13 10539738 to 10557707 17969 - lincRNA gene predicted gene, 36525
Tssr3991 13 10581557 to 10581559 2 + TSS region transcription start site region 3991
Gm23415 13 10592484 to 10592566 82 - miRNA gene predicted gene, 23415
Gm40666 13 10674389 to 10676726 2337 + lncRNA gene predicted gene, 40666
Gm47408 13 10700161 to 10830778 130617 + lincRNA gene predicted gene, 47408
Tssr3992 13 10889046 to 10889047 1 - TSS region transcription start site region 3992
Tssr3993 13 10947419 to 10947420 1 - TSS region transcription start site region 3993
Gm47486 13 10974423 to 10979945 5522 + lincRNA gene predicted gene, 47486
D13Mit304 13 11082352 to 11082454 102 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 304