Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:90067825-91488083

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xrcc4 13 89848914 to 90089608 240694 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 4
Tssr123395 13 90089060 to 90089092 32 - TSS region transcription start site region 123395
Tssr123396 13 90089105 to 90089116 11 - TSS region transcription start site region 123396
Cpgi5925 13 90089263 to 90090137 874 CpG island CpG island 5925
Tssr123397 13 90089513 to 90089543 30 - TSS region transcription start site region 123397
Tssr123398 13 90089556 to 90089616 60 - TSS region transcription start site region 123398
Tmem167 13 90089667 to 90114921 25254 + protein coding gene transmembrane protein 167
Tssr120592 13 90089677 to 90089688 11 + TSS region transcription start site region 120592
Tssr120593 13 90089705 to 90089740 35 + TSS region transcription start site region 120593
Gm24507 13 90098981 to 90099114 133 + snoRNA gene predicted gene, 24507
Tssr120594 13 90101822 to 90101827 5 + TSS region transcription start site region 120594
Gm37727 13 90157154 to 90157972 818 + unclassified gene predicted gene, 37727
Gm41013 13 90160746 to 90163019 2273 - lncRNA gene predicted gene, 41013
Gm29680 13 90179217 to 90217142 37925 - lincRNA gene predicted gene, 29680
Gm37054 13 90238172 to 90238714 542 + unclassified gene predicted gene, 37054
Gm47520 13 90360130 to 90418100 57970 - lincRNA gene predicted gene, 47520
Gm37708 13 90385663 to 90386557 894 - unclassified gene predicted gene, 37708
Gm35111 13 90466750 to 90549165 82415 - lncRNA gene predicted gene, 35111
Gm21726 13 90583329 to 90583720 391 + pseudogene predicted gene, 21726
Gm36966 13 90634085 to 90634497 412 + unclassified gene predicted gene, 36966
Gm44338 13 90760112 to 90760221 109 + miRNA gene predicted gene, 44338
Gm47521 13 90777825 to 90778083 258 - pseudogene predicted gene, 47521
Gm18518 13 90867608 to 90868607 999 + pseudogene predicted gene, 18518
Atp6ap1l 13 90883439 to 90905355 21916 - protein coding gene ATPase, H+ transporting, lysosomal accessory protein 1-like
Tssr123399 13 90886718 to 90886723 5 - TSS region transcription start site region 123399
Tssr123400 13 90886756 to 90886761 5 - TSS region transcription start site region 123400
Tssr123401 13 90886777 to 90886822 45 - TSS region transcription start site region 123401
Tssr123402 13 90905321 to 90905341 20 - TSS region transcription start site region 123402
Cpgi5926 13 90922888 to 90923789 901 CpG island CpG island 5926
Tssr120595 13 90923122 to 90923170 48 + TSS region transcription start site region 120595
Rps23 13 90923122 to 90924732 1610 + protein coding gene ribosomal protein S23
Gm46434 13 90929910 to 90931681 1771 - lncRNA gene predicted gene, 46434
Atg10 13 90935356 to 91223968 288612 - protein coding gene autophagy related 10
Tssr120596 13 91098496 to 91098501 5 + TSS region transcription start site region 120596
D13Mit319 13 91181749 to 91181856 107 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-319
D13Gor2 13 91182431 to 91182946 515 DNA segment DNA segment, Chr 13, Gorin 2
Gm17450 13 91220452 to 91220878 426 + pseudogene predicted gene, 17450
Cpgi5927 13 91223735 to 91224387 652 CpG island CpG island 5927
Tssr123403 13 91223955 to 91223994 39 - TSS region transcription start site region 123403
D13Sh1 13 91236286 to 91236665 379 DNA segment DNA segment, Chr 13, Steve Hardies 1
Gm41014 13 91250388 to 91278012 27624 - lncRNA gene predicted gene, 41014
Gm47381 13 91259376 to 91274954 15578 + lincRNA gene predicted gene, 47381
Gm4130 13 91261449 to 91262418 969 - pseudogene predicted gene 4130
Tssr123404 13 91262748 to 91262751 3 - TSS region transcription start site region 123404
Tssr120597 13 91318820 to 91318822 2 + TSS region transcription start site region 120597
A830009L08Rik 13 91368990 to 91388085 19095 - lincRNA gene RIKEN cDNA A830009L08 gene
Cpgi5928 13 91370858 to 91371159 301 CpG island CpG island 5928
Tssr123405 13 91370942 to 91370974 32 - TSS region transcription start site region 123405
Gm29540 13 91373842 to 91374294 452 - sense intronic lncRNA gene predicted gene 29540
Tssr4136 13 91374877 to 91374883 6 + TSS region transcription start site region 4136
Tssr123406 13 91388079 to 91388090 11 - TSS region transcription start site region 123406
Tssr123407 13 91388101 to 91388110 9 - TSS region transcription start site region 123407
Cpgi5929 13 91460170 to 91462377 2207 CpG island CpG island 5929
Ssbp2 13 91460283 to 91703429 243146 + protein coding gene single-stranded DNA binding protein 2
Tssr120598 13 91461105 to 91461112 7 + TSS region transcription start site region 120598
Tssr120599 13 91461114 to 91461125 11 + TSS region transcription start site region 120599
Tssr120600 13 91461126 to 91461143 17 + TSS region transcription start site region 120600
Tssr120601 13 91461145 to 91461188 43 + TSS region transcription start site region 120601
Tssr120602 13 91461199 to 91461204 5 + TSS region transcription start site region 120602
D13Mit202 13 91469631 to 91469771 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 202
Tssr120603 13 91484539 to 91484556 17 + TSS region transcription start site region 120603
Tssr120604 13 91484560 to 91484575 15 + TSS region transcription start site region 120604