Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:90039877-92709883

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xrcc4 13 89848914 to 90089608 240694 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 4
Tssr123395 13 90089060 to 90089092 32 - TSS region transcription start site region 123395
Tssr123396 13 90089105 to 90089116 11 - TSS region transcription start site region 123396
Cpgi5925 13 90089263 to 90090137 874 CpG island CpG island 5925
Tssr123397 13 90089513 to 90089543 30 - TSS region transcription start site region 123397
Tssr123398 13 90089556 to 90089616 60 - TSS region transcription start site region 123398
Tmem167 13 90089667 to 90114921 25254 + protein coding gene transmembrane protein 167
Tssr120592 13 90089677 to 90089688 11 + TSS region transcription start site region 120592
Tssr120593 13 90089705 to 90089740 35 + TSS region transcription start site region 120593
Gm24507 13 90098981 to 90099114 133 + snoRNA gene predicted gene, 24507
Tssr120594 13 90101822 to 90101827 5 + TSS region transcription start site region 120594
Gm37727 13 90157154 to 90157972 818 + unclassified gene predicted gene, 37727
Gm41013 13 90160746 to 90163019 2273 - lncRNA gene predicted gene, 41013
Gm29680 13 90179217 to 90217142 37925 - lincRNA gene predicted gene, 29680
Gm37054 13 90238172 to 90238714 542 + unclassified gene predicted gene, 37054
Gm47520 13 90360130 to 90418100 57970 - lincRNA gene predicted gene, 47520
Gm37708 13 90385663 to 90386557 894 - unclassified gene predicted gene, 37708
Gm35111 13 90466750 to 90549165 82415 - lncRNA gene predicted gene, 35111
Gm21726 13 90583329 to 90583720 391 + pseudogene predicted gene, 21726
Gm36966 13 90634085 to 90634497 412 + unclassified gene predicted gene, 36966
Gm44338 13 90760112 to 90760221 109 + miRNA gene predicted gene, 44338
Gm47521 13 90777825 to 90778083 258 - pseudogene predicted gene, 47521
Gm18518 13 90867608 to 90868607 999 + pseudogene predicted gene, 18518
Atp6ap1l 13 90883439 to 90905355 21916 - protein coding gene ATPase, H+ transporting, lysosomal accessory protein 1-like
Tssr123399 13 90886718 to 90886723 5 - TSS region transcription start site region 123399
Tssr123400 13 90886756 to 90886761 5 - TSS region transcription start site region 123400
Tssr123401 13 90886777 to 90886822 45 - TSS region transcription start site region 123401
Tssr123402 13 90905321 to 90905341 20 - TSS region transcription start site region 123402
Cpgi5926 13 90922888 to 90923789 901 CpG island CpG island 5926
Rps23 13 90923122 to 90924732 1610 + protein coding gene ribosomal protein S23
Tssr120595 13 90923122 to 90923170 48 + TSS region transcription start site region 120595
Gm46434 13 90929910 to 90931681 1771 - lncRNA gene predicted gene, 46434
Atg10 13 90935356 to 91223968 288612 - protein coding gene autophagy related 10
Tssr120596 13 91098496 to 91098501 5 + TSS region transcription start site region 120596
D13Mit319 13 91181749 to 91181856 107 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-319
D13Gor2 13 91182431 to 91182946 515 DNA segment DNA segment, Chr 13, Gorin 2
Gm17450 13 91220452 to 91220878 426 + pseudogene predicted gene, 17450
Cpgi5927 13 91223735 to 91224387 652 CpG island CpG island 5927
Tssr123403 13 91223955 to 91223994 39 - TSS region transcription start site region 123403
D13Sh1 13 91236286 to 91236665 379 DNA segment DNA segment, Chr 13, Steve Hardies 1
Gm41014 13 91250388 to 91278012 27624 - lncRNA gene predicted gene, 41014
Gm47381 13 91259376 to 91274954 15578 + lincRNA gene predicted gene, 47381
Gm4130 13 91261449 to 91262418 969 - pseudogene predicted gene 4130
Tssr123404 13 91262748 to 91262751 3 - TSS region transcription start site region 123404
Tssr120597 13 91318820 to 91318822 2 + TSS region transcription start site region 120597
A830009L08Rik 13 91368990 to 91388085 19095 - lincRNA gene RIKEN cDNA A830009L08 gene
Cpgi5928 13 91370858 to 91371159 301 CpG island CpG island 5928
Tssr123405 13 91370942 to 91370974 32 - TSS region transcription start site region 123405
Gm29540 13 91373842 to 91374294 452 - sense intronic lncRNA gene predicted gene 29540
Tssr4136 13 91374877 to 91374883 6 + TSS region transcription start site region 4136
Tssr123406 13 91388079 to 91388090 11 - TSS region transcription start site region 123406
Tssr123407 13 91388101 to 91388110 9 - TSS region transcription start site region 123407
Cpgi5929 13 91460170 to 91462377 2207 CpG island CpG island 5929
Ssbp2 13 91460283 to 91703429 243146 + protein coding gene single-stranded DNA binding protein 2
Tssr120598 13 91461105 to 91461112 7 + TSS region transcription start site region 120598
Tssr120599 13 91461114 to 91461125 11 + TSS region transcription start site region 120599
Tssr120600 13 91461126 to 91461143 17 + TSS region transcription start site region 120600
Tssr120601 13 91461145 to 91461188 43 + TSS region transcription start site region 120601
Tssr120602 13 91461199 to 91461204 5 + TSS region transcription start site region 120602
D13Mit202 13 91469631 to 91469771 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 202
Tssr120603 13 91484539 to 91484556 17 + TSS region transcription start site region 120603
Tssr120604 13 91484560 to 91484575 15 + TSS region transcription start site region 120604
Tssr120605 13 91496244 to 91496245 1 + TSS region transcription start site region 120605
Tssr120606 13 91504477 to 91504489 12 + TSS region transcription start site region 120606
Gm41016 13 91534058 to 91539333 5275 + lncRNA gene predicted gene, 41016
Tssr120607 13 91564320 to 91564334 14 + TSS region transcription start site region 120607
Tssr120608 13 91581826 to 91581831 5 + TSS region transcription start site region 120608
Tssr123408 13 91591418 to 91591419 1 - TSS region transcription start site region 123408
Tssr120609 13 91606444 to 91606450 6 + TSS region transcription start site region 120609
Tssr120610 13 91609277 to 91609303 26 + TSS region transcription start site region 120610
Tssr120611 13 91624297 to 91624304 7 + TSS region transcription start site region 120611
D13Mit192.1 13 91665778 to 91665926 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 192.1
Tssr120612 13 91676782 to 91676793 11 + TSS region transcription start site region 120612
Tssr120613 13 91678616 to 91678631 15 + TSS region transcription start site region 120613
4833422C13Rik 13 91701665 to 91741872 40207 - antisense lncRNA gene RIKEN cDNA 4833422C13 gene
Gm22778 13 91723256 to 91723383 127 + snoRNA gene predicted gene, 22778
Cpgi5930 13 91741175 to 91741884 709 CpG island CpG island 5930
Tssr120614 13 91741484 to 91741489 5 + TSS region transcription start site region 120614
Tssr120615 13 91741507 to 91741531 24 + TSS region transcription start site region 120615
Acot12 13 91741512 to 91786148 44636 + protein coding gene acyl-CoA thioesterase 12
Tssr123409 13 91741746 to 91741766 20 - TSS region transcription start site region 123409
Tssr123410 13 91741866 to 91741880 14 - TSS region transcription start site region 123410
Gm24597 13 91744705 to 91745004 299 - unclassified non-coding RNA gene predicted gene, 24597
Tssr120616 13 91750202 to 91750235 33 + TSS region transcription start site region 120616
Gm27656 13 91752106 to 91752185 79 + miRNA gene predicted gene, 27656
4933440K10Rik 13 91780896 to 91782354 1458 unclassified gene RIKEN cDNA 4933440K10 gene
D13Mit193.1 13 91780967 to 91781078 111 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 193.1
D13Mit193 13 91781056 to 91781177 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 193
Zcchc9 13 91796533 to 91807705 11172 - protein coding gene zinc finger, CCHC domain containing 9
Cpgi5931 13 91807145 to 91807874 729 CpG island CpG island 5931
Tssr123411 13 91807612 to 91807619 7 - TSS region transcription start site region 123411
Tssr123412 13 91807636 to 91807655 19 - TSS region transcription start site region 123412
Tssr123413 13 91807658 to 91807708 50 - TSS region transcription start site region 123413
Tssr120617 13 91807701 to 91807720 19 + TSS region transcription start site region 120617
Tssr120618 13 91807780 to 91807793 13 + TSS region transcription start site region 120618
Ckmt2 13 91853387 to 91876885 23498 - protein coding gene creatine kinase, mitochondrial 2
Tssr123414 13 91861310 to 91861313 3 - TSS region transcription start site region 123414
Tssr123415 13 91861322 to 91861334 12 - TSS region transcription start site region 123415
Tssr123416 13 91861340 to 91861351 11 - TSS region transcription start site region 123416
Tssr123417 13 91861354 to 91861371 17 - TSS region transcription start site region 123417
Tssr123418 13 91861375 to 91861380 5 - TSS region transcription start site region 123418
Tssr120619 13 91861430 to 91861443 13 + TSS region transcription start site region 120619
1700119I11Rik 13 91861432 to 91862044 612 + antisense lncRNA gene RIKEN cDNA 1700119I11 gene
Tssr123419 13 91876876 to 91876890 14 - TSS region transcription start site region 123419
Rasgrf2 13 91880407 to 92131494 251087 - protein coding gene RAS protein-specific guanine nucleotide-releasing factor 2
Tssr123420 13 91896567 to 91896578 11 - TSS region transcription start site region 123420
Gm46435 13 91923619 to 91934105 10486 + lncRNA gene predicted gene, 46435
Tssr120620 13 91930629 to 91930637 8 + TSS region transcription start site region 120620
Tssr120621 13 91930664 to 91930671 7 + TSS region transcription start site region 120621
Tssr4137 13 92021718 to 92021722 4 - TSS region transcription start site region 4137
Tssr123421 13 92030897 to 92030908 11 - TSS region transcription start site region 123421
Tssr123422 13 92030919 to 92030954 35 - TSS region transcription start site region 123422
Cpgi5932 13 92131047 to 92132221 1174 CpG island CpG island 5932
Tssr4138 13 92131547 to 92131561 14 - TSS region transcription start site region 4138
Tssr123423 13 92131607 to 92131680 73 - TSS region transcription start site region 123423
Tssr123424 13 92131798 to 92131809 11 - TSS region transcription start site region 123424
Tssr123425 13 92131818 to 92131837 19 - TSS region transcription start site region 123425
Tssr123426 13 92131849 to 92131866 17 - TSS region transcription start site region 123426
Tssr123427 13 92131877 to 92131886 9 - TSS region transcription start site region 123427
Tssr123428 13 92173867 to 92173873 6 - TSS region transcription start site region 123428
D13Mit159 13 92183421 to 92183558 137 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 159
Msh3 13 92211878 to 92355003 143125 - protein coding gene mutS homolog 3
Gm20379 13 92305980 to 92307183 1203 + protein coding gene predicted gene, 20379
Cpgi5933 13 92354373 to 92355667 1294 CpG island CpG island 5933
Tssr123429 13 92354503 to 92354520 17 - TSS region transcription start site region 123429
Tssr120622 13 92354748 to 92354766 18 + TSS region transcription start site region 120622
Dhfr 13 92354783 to 92389053 34270 + protein coding gene dihydrofolate reductase
Tssr123430 13 92354943 to 92355025 82 - TSS region transcription start site region 123430
Tssr120623 13 92355139 to 92355176 37 + TSS region transcription start site region 120623
Tssr120624 13 92355186 to 92355210 24 + TSS region transcription start site region 120624
Tssr120625 13 92355212 to 92355217 5 + TSS region transcription start site region 120625
Tssr120626 13 92355239 to 92355248 9 + TSS region transcription start site region 120626
Gm19308 13 92355706 to 92357918 2212 - pseudogene predicted gene, 19308
C030017D09Rik 13 92415017 to 92427224 12207 - antisense lncRNA gene RIKEN cDNA C030017D09 gene
Cpgi5934 13 92425648 to 92427256 1608 CpG island CpG island 5934
Ankrd34b 13 92425896 to 92441658 15762 + protein coding gene ankyrin repeat domain 34B
Tssr120627 13 92425920 to 92425929 9 + TSS region transcription start site region 120627
Tssr120628 13 92425957 to 92426031 74 + TSS region transcription start site region 120628
D13Mit286 13 92445760 to 92445877 117 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 286
Fam151b 13 92449625 to 92484015 34390 - protein coding gene family with sequence similarity 151, member B
Tssr123431 13 92451256 to 92451276 20 - TSS region transcription start site region 123431
Cpgi5935 13 92483910 to 92484071 161 CpG island CpG island 5935
Tssr123432 13 92483951 to 92483986 35 - TSS region transcription start site region 123432
Tssr123433 13 92483996 to 92484037 41 - TSS region transcription start site region 123433
Zfyve16 13 92487108 to 92530868 43760 - protein coding gene zinc finger, FYVE domain containing 16
Tssr123434 13 92523264 to 92523276 12 - TSS region transcription start site region 123434
Tssr123435 13 92529983 to 92529987 4 - TSS region transcription start site region 123435
Cpgi5936 13 92530164 to 92531391 1227 CpG island CpG island 5936
Tssr123436 13 92530788 to 92530802 14 - TSS region transcription start site region 123436
Tssr123437 13 92530813 to 92530858 45 - TSS region transcription start site region 123437
Tssr120629 13 92530907 to 92530923 16 + TSS region transcription start site region 120629
Tssr120630 13 92530933 to 92530961 28 + TSS region transcription start site region 120630
Tssr120631 13 92568925 to 92568928 3 + TSS region transcription start site region 120631
Spz1 13 92574636 to 92576172 1536 - protein coding gene spermatogenic leucine zipper 1
Cpgi5937 13 92574927 to 92575184 257 CpG island CpG island 5937
Tssr120632 13 92575777 to 92575789 12 + TSS region transcription start site region 120632
Tssr123438 13 92576165 to 92576200 35 - TSS region transcription start site region 123438
Tssr4139 13 92576224 to 92576231 7 - TSS region transcription start site region 4139
Cpgi5938 13 92610583 to 92611808 1225 CpG island CpG island 5938
Tssr123439 13 92610924 to 92610950 26 - TSS region transcription start site region 123439
Tssr120633 13 92611078 to 92611117 39 + TSS region transcription start site region 120633
Tssr120634 13 92611119 to 92611139 20 + TSS region transcription start site region 120634
Serinc5 13 92611138 to 92711947 100809 + protein coding gene serine incorporator 5
Tssr120635 13 92611168 to 92611179 11 + TSS region transcription start site region 120635
Tssr120636 13 92642227 to 92642236 9 + TSS region transcription start site region 120636
Tssr120637 13 92661014 to 92661060 46 + TSS region transcription start site region 120637
Tssr120638 13 92683368 to 92683400 32 + TSS region transcription start site region 120638
Tssr120639 13 92693257 to 92693259 2 + TSS region transcription start site region 120639
Gm41018 13 92704730 to 92707718 2988 - lncRNA gene predicted gene, 41018
Tssr123440 13 92706525 to 92706548 23 - TSS region transcription start site region 123440