Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:89735746-90588019

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vcan 13 89655312 to 89742509 87197 - protein coding gene versican
Gm4117 13 89734040 to 89798058 64018 + antisense lncRNA gene predicted gene 4117
Cpgi5922 13 89739332 to 89739788 456 CpG island CpG island 5922
Tssr120590 13 89739451 to 89739471 20 + TSS region transcription start site region 120590
Tssr120591 13 89739479 to 89739493 14 + TSS region transcription start site region 120591
Cpgi5923 13 89740676 to 89741356 680 CpG island CpG island 5923
Cpgi5924 13 89742076 to 89742654 578 CpG island CpG island 5924
Tssr123384 13 89742272 to 89742277 5 - TSS region transcription start site region 123384
Tssr123385 13 89742309 to 89742330 21 - TSS region transcription start site region 123385
Tssr123386 13 89742341 to 89742365 24 - TSS region transcription start site region 123386
Tssr123387 13 89742381 to 89742392 11 - TSS region transcription start site region 123387
Tssr123388 13 89742490 to 89742515 25 - TSS region transcription start site region 123388
Tssr123389 13 89742516 to 89742531 15 - TSS region transcription start site region 123389
Tssr123390 13 89742551 to 89742569 18 - TSS region transcription start site region 123390
Tssr123391 13 89742663 to 89742674 11 - TSS region transcription start site region 123391
Tssr123392 13 89742684 to 89742695 11 - TSS region transcription start site region 123392
Xrcc4 13 89848914 to 90089608 240694 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 4
Tssr123393 13 89893233 to 89893235 2 - TSS region transcription start site region 123393
A430063P04Rik 13 89902606 to 89905711 3105 unclassified gene RIKEN cDNA A430063P04 gene
Tssr123394 13 89909658 to 89909661 3 - TSS region transcription start site region 123394
Gm24498 13 89927442 to 89927543 101 - snRNA gene predicted gene, 24498
Tssr123395 13 90089060 to 90089092 32 - TSS region transcription start site region 123395
Tssr123396 13 90089105 to 90089116 11 - TSS region transcription start site region 123396
Cpgi5925 13 90089263 to 90090137 874 CpG island CpG island 5925
Tssr123397 13 90089513 to 90089543 30 - TSS region transcription start site region 123397
Tssr123398 13 90089556 to 90089616 60 - TSS region transcription start site region 123398
Tmem167 13 90089667 to 90114921 25254 + protein coding gene transmembrane protein 167
Tssr120592 13 90089677 to 90089688 11 + TSS region transcription start site region 120592
Tssr120593 13 90089705 to 90089740 35 + TSS region transcription start site region 120593
Gm24507 13 90098981 to 90099114 133 + snoRNA gene predicted gene, 24507
Tssr120594 13 90101822 to 90101827 5 + TSS region transcription start site region 120594
Gm37727 13 90157154 to 90157972 818 + unclassified gene predicted gene, 37727
Gm41013 13 90160746 to 90163019 2273 - lncRNA gene predicted gene, 41013
Gm29680 13 90179217 to 90217142 37925 - lincRNA gene predicted gene, 29680
Gm37054 13 90238172 to 90238714 542 + unclassified gene predicted gene, 37054
Gm47520 13 90360130 to 90418100 57970 - lincRNA gene predicted gene, 47520
Gm37708 13 90385663 to 90386557 894 - unclassified gene predicted gene, 37708
Gm35111 13 90466750 to 90549165 82415 - lncRNA gene predicted gene, 35111
Gm21726 13 90583329 to 90583720 391 + pseudogene predicted gene, 21726