Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:89170312-90227509

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Edil3 13 88821472 to 89323223 501751 + protein coding gene EGF-like repeats and discoidin I-like domains 3
Tssr120580 13 89209709 to 89209714 5 + TSS region transcription start site region 120580
Tssr120581 13 89227467 to 89227473 6 + TSS region transcription start site region 120581
Tssr123375 13 89278356 to 89278357 1 - TSS region transcription start site region 123375
Tssr123376 13 89384819 to 89384825 6 - TSS region transcription start site region 123376
Gm34699 13 89499220 to 89539669 40449 - lncRNA gene predicted gene, 34699
Cpgi5921 13 89539118 to 89539621 503 CpG island CpG island 5921
Tssr120582 13 89540505 to 89540510 5 + TSS region transcription start site region 120582
Hapln1 13 89540528 to 89611832 71304 + protein coding gene hyaluronan and proteoglycan link protein 1
Tssr120583 13 89540662 to 89540678 16 + TSS region transcription start site region 120583
Tssr120584 13 89540687 to 89540698 11 + TSS region transcription start site region 120584
Tssr120585 13 89540705 to 89540712 7 + TSS region transcription start site region 120585
Tssr120586 13 89540815 to 89540821 6 + TSS region transcription start site region 120586
Tssr120587 13 89540845 to 89540865 20 + TSS region transcription start site region 120587
Gm8546 13 89577158 to 89578413 1255 - pseudogene predicted gene 8546
Tssr123377 13 89578441 to 89578463 22 - TSS region transcription start site region 123377
Tssr120588 13 89584524 to 89584543 19 + TSS region transcription start site region 120588
Tssr120589 13 89584651 to 89584708 57 + TSS region transcription start site region 120589
Vcan 13 89655312 to 89742509 87197 - protein coding gene versican
Tssr123378 13 89658104 to 89658126 22 - TSS region transcription start site region 123378
Tssr123379 13 89662026 to 89662034 8 - TSS region transcription start site region 123379
Tssr123380 13 89662056 to 89662067 11 - TSS region transcription start site region 123380
Gm16318 13 89662770 to 89663370 600 + pseudogene predicted gene 16318
Tssr123381 13 89690731 to 89690735 4 - TSS region transcription start site region 123381
Tssr123382 13 89694925 to 89694931 6 - TSS region transcription start site region 123382
Tssr123383 13 89712274 to 89712288 14 - TSS region transcription start site region 123383
Gm4117 13 89734040 to 89798058 64018 + antisense lncRNA gene predicted gene 4117
Cpgi5922 13 89739332 to 89739788 456 CpG island CpG island 5922
Tssr120590 13 89739451 to 89739471 20 + TSS region transcription start site region 120590
Tssr120591 13 89739479 to 89739493 14 + TSS region transcription start site region 120591
Cpgi5923 13 89740676 to 89741356 680 CpG island CpG island 5923
Cpgi5924 13 89742076 to 89742654 578 CpG island CpG island 5924
Tssr123384 13 89742272 to 89742277 5 - TSS region transcription start site region 123384
Tssr123385 13 89742309 to 89742330 21 - TSS region transcription start site region 123385
Tssr123386 13 89742341 to 89742365 24 - TSS region transcription start site region 123386
Tssr123387 13 89742381 to 89742392 11 - TSS region transcription start site region 123387
Tssr123388 13 89742490 to 89742515 25 - TSS region transcription start site region 123388
Tssr123389 13 89742516 to 89742531 15 - TSS region transcription start site region 123389
Tssr123390 13 89742551 to 89742569 18 - TSS region transcription start site region 123390
Tssr123391 13 89742663 to 89742674 11 - TSS region transcription start site region 123391
Tssr123392 13 89742684 to 89742695 11 - TSS region transcription start site region 123392
Xrcc4 13 89848914 to 90089608 240694 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 4
Tssr123393 13 89893233 to 89893235 2 - TSS region transcription start site region 123393
A430063P04Rik 13 89902606 to 89905711 3105 unclassified gene RIKEN cDNA A430063P04 gene
Tssr123394 13 89909658 to 89909661 3 - TSS region transcription start site region 123394
Gm24498 13 89927442 to 89927543 101 - snRNA gene predicted gene, 24498
Tssr123395 13 90089060 to 90089092 32 - TSS region transcription start site region 123395
Tssr123396 13 90089105 to 90089116 11 - TSS region transcription start site region 123396
Cpgi5925 13 90089263 to 90090137 874 CpG island CpG island 5925
Tssr123397 13 90089513 to 90089543 30 - TSS region transcription start site region 123397
Tssr123398 13 90089556 to 90089616 60 - TSS region transcription start site region 123398
Tmem167 13 90089667 to 90114921 25254 + protein coding gene transmembrane protein 167
Tssr120592 13 90089677 to 90089688 11 + TSS region transcription start site region 120592
Tssr120593 13 90089705 to 90089740 35 + TSS region transcription start site region 120593
Gm24507 13 90098981 to 90099114 133 + snoRNA gene predicted gene, 24507
Tssr120594 13 90101822 to 90101827 5 + TSS region transcription start site region 120594
Gm37727 13 90157154 to 90157972 818 + unclassified gene predicted gene, 37727
Gm41013 13 90160746 to 90163019 2273 - lncRNA gene predicted gene, 41013
Gm29680 13 90179217 to 90217142 37925 - lincRNA gene predicted gene, 29680
Acigg6 13 105683731 to 89583537 -16100194 QTL anti COL7 IgG2a/c antibody 6