Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:88747467-89707473

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5919 13 88821209 to 88822282 1073 CpG island CpG island 5919
Edil3 13 88821472 to 89323223 501751 + protein coding gene EGF-like repeats and discoidin I-like domains 3
Tssr120562 13 88821474 to 88821520 46 + TSS region transcription start site region 120562
Tssr120563 13 88821543 to 88821580 37 + TSS region transcription start site region 120563
Tssr120564 13 88821582 to 88821591 9 + TSS region transcription start site region 120564
Tssr120565 13 88821594 to 88821603 9 + TSS region transcription start site region 120565
Tssr120566 13 88821606 to 88821623 17 + TSS region transcription start site region 120566
Tssr120567 13 88821669 to 88821676 7 + TSS region transcription start site region 120567
Tssr120568 13 88821679 to 88821684 5 + TSS region transcription start site region 120568
Tssr120569 13 88821708 to 88821719 11 + TSS region transcription start site region 120569
Tssr120570 13 88821732 to 88821739 7 + TSS region transcription start site region 120570
Tssr120571 13 88821750 to 88821761 11 + TSS region transcription start site region 120571
Tssr123374 13 88821774 to 88821795 21 - TSS region transcription start site region 123374
Tssr120572 13 88821882 to 88821914 32 + TSS region transcription start site region 120572
Tssr120573 13 88821916 to 88821942 26 + TSS region transcription start site region 120573
Tssr120574 13 88821943 to 88821976 33 + TSS region transcription start site region 120574
Tssr120575 13 88823591 to 88823595 4 + TSS region transcription start site region 120575
Cpgi5920 13 88823638 to 88824152 514 CpG island CpG island 5920
Tssr120576 13 88824214 to 88824218 4 + TSS region transcription start site region 120576
Gm38504 13 88824224 to 88836120 11896 + lncRNA gene predicted gene, 38504
Tssr120577 13 88827494 to 88827495 1 + TSS region transcription start site region 120577
Gm18317 13 88843574 to 88844576 1002 + pseudogene predicted gene, 18317
Gm46433 13 88870746 to 88880679 9933 + lncRNA gene predicted gene, 46433
Tssr120578 13 88920383 to 88920386 3 + TSS region transcription start site region 120578
Tssr120579 13 89051407 to 89051411 4 + TSS region transcription start site region 120579
Tssr120580 13 89209709 to 89209714 5 + TSS region transcription start site region 120580
Tssr120581 13 89227467 to 89227473 6 + TSS region transcription start site region 120581
Tssr123375 13 89278356 to 89278357 1 - TSS region transcription start site region 123375
Tssr123376 13 89384819 to 89384825 6 - TSS region transcription start site region 123376
Gm34699 13 89499220 to 89539669 40449 - lncRNA gene predicted gene, 34699
Cpgi5921 13 89539118 to 89539621 503 CpG island CpG island 5921
Tssr120582 13 89540505 to 89540510 5 + TSS region transcription start site region 120582
Hapln1 13 89540528 to 89611832 71304 + protein coding gene hyaluronan and proteoglycan link protein 1
Tssr120583 13 89540662 to 89540678 16 + TSS region transcription start site region 120583
Tssr120584 13 89540687 to 89540698 11 + TSS region transcription start site region 120584
Tssr120585 13 89540705 to 89540712 7 + TSS region transcription start site region 120585
Tssr120586 13 89540815 to 89540821 6 + TSS region transcription start site region 120586
Tssr120587 13 89540845 to 89540865 20 + TSS region transcription start site region 120587
Gm8546 13 89577158 to 89578413 1255 - pseudogene predicted gene 8546
Tssr123377 13 89578441 to 89578463 22 - TSS region transcription start site region 123377
Tssr120588 13 89584524 to 89584543 19 + TSS region transcription start site region 120588
Tssr120589 13 89584651 to 89584708 57 + TSS region transcription start site region 120589
Vcan 13 89655312 to 89742509 87197 - protein coding gene versican
Tssr123378 13 89658104 to 89658126 22 - TSS region transcription start site region 123378
Tssr123379 13 89662026 to 89662034 8 - TSS region transcription start site region 123379
Tssr123380 13 89662056 to 89662067 11 - TSS region transcription start site region 123380
Gm16318 13 89662770 to 89663370 600 + pseudogene predicted gene 16318
Tssr123381 13 89690731 to 89690735 4 - TSS region transcription start site region 123381
Tssr123382 13 89694925 to 89694931 6 - TSS region transcription start site region 123382
Acigg6 13 105683731 to 89583537 -16100194 QTL anti COL7 IgG2a/c antibody 6